FC876299

Overview
NameFC876299
Unique NameFC876299
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length539
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10210 contig Ccv1_Contig10210:9..547. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876299 vs. ExPASy Swiss-Prot
Match: PIP28_ARATH (Probable aquaporin PIP2-8 OS=Arabidopsis thaliana GN=PIP2-8 PE=1 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 8.050e-38
Identity = 83/131 (63.36%), Postives = 89/131 (67.94%), Query Frame = 3
Query:  144 VVEHGSYSAKDYTDPPPEPLFHAEELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILCIAWGFGGMIFVLVYCTDGISGGHINPAVTIGLFLVRKVSMVRAVMYMVAHCLVAI 536
            V E G +  KDY DPPP PL    EL  WSFYRA+IAEFIA            IG+K+QT P      C GVG+L IAW FGGMIFVLVYCT GISGGHINPAVT GLFL RKVS+ RAV YMVA CL AI
Sbjct:    5 VSEEGRHG-KDYVDPPPAPLLDMAELKLWSFYRAIIAEFIATLLFLYVTVATVIGHKNQTGP------CGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLPRAVAYMVAQCLGAI 128          
BLAST of FC876299 vs. ExPASy Swiss-Prot
Match: PIP1_ATRCA (Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.342e-37
Identity = 80/137 (58.39%), Postives = 93/137 (67.88%), Query Frame = 3
Query:  126 MAKDTGVVEHGSYSAKDYTDPPPEPLFHAEELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILCIAWGFGGMIFVLVYCTDGISGGHINPAVTIGLFLVRKVSMVRAVMYMVAHCLVAI 536
            ++++  V +HG    KDY DPPP P F   EL  WSF+RA IAEFIA            IGYK +TDP      CA VG+L IAW FGGMIFVLVYCT GISGGHINPAVT GLFL RKVS++RA++YM+A C  AI
Sbjct:    6 ISEEGQVHQHG----KDYVDPPPAPFFDMGELKLWSFWRAAIAEFIATLLFLYITVATVIGYKKETDP------CASVGLLGIAWSFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCAGAI 132          
BLAST of FC876299 vs. ExPASy Swiss-Prot
Match: PIP27_ORYSJ (Probable aquaporin PIP2-7 OS=Oryza sativa subsp. japonica GN=PIP2-7 PE=2 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 2.863e-35
Identity = 77/132 (58.33%), Postives = 89/132 (67.42%), Query Frame = 3
Query:  147 VEHGSYSAK-DYTDPPPEPLFHAEELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILCIAWGFGGMIFVLVYCTDGISGGHINPAVTIGLFLVRKVSMVRAVMYMVAHCLVAIS 539
            VE G+ +AK  Y DPPP PL    EL KWS YRALIAEF+A            IGYK+Q      VD C GVG L +AW FG  IFVLVYCT G+SGGHINPAVT+GLF  RK+S+VR V+Y+VA CL AI+
Sbjct:   12 VEGGAAAAKAPYWDPPPAPLLDTSELGKWSLYRALIAEFMATLIFLYVSIATVIGYKNQR---ATVDACTGVGYLGVAWSFGATIFVLVYCTGGVSGGHINPAVTLGLFFGRKLSLVRTVLYVVAQCLGAIA 140          
BLAST of FC876299 vs. ExPASy Swiss-Prot
Match: PIP15_MAIZE (Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 5.399e-34
Identity = 74/122 (60.66%), Postives = 82/122 (67.21%), Query Frame = 3
Query:  171 KDYTDPPPEPLFHAEELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILCIAWGFGGMIFVLVYCTDGISGGHINPAVTIGLFLVRKVSMVRAVMYMVAHCLVAI 536
            KDY +PPP PLF AEELT WSFYRA IAEF+A            +G       +K+   CA VGI  IAW FGGMIF LVYCT GISGGHINPAVT GLFL RK+S+ RA+ YMV  CL AI
Sbjct:   31 KDYKEPPPAPLFEAEELTSWSFYRAGIAEFVATFLFLYISILTVMGV------SKSSSKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAI 146          
BLAST of FC876299 vs. ExPASy Swiss-Prot
Match: PIP14_ARATH (Probable aquaporin PIP1-4 OS=Arabidopsis thaliana GN=PIP1.4 PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.018e-32
Identity = 74/122 (60.66%), Postives = 81/122 (66.39%), Query Frame = 3
Query:  171 KDYTDPPPEPLFHAEELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILCIAWGFGGMIFVLVYCTDGISGGHINPAVTIGLFLVRKVSMVRAVMYMVAHCLVAI 536
            KDY +PPP PLF   EL+ WSFYRA IAEFIA            +G K     A N+  CA VGI  IAW FGGMIF LVYCT GISGGHINPAVT GLFL RK+S+ RAV YM+  CL AI
Sbjct:   30 KDYKEPPPAPLFEPGELSSWSFYRAGIAEFIATFLFLYITVLTVMGVKR----APNM--CASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAI 145          
BLAST of FC876299 vs. ExPASy Swiss-Prot
Match: PIP2_PEA (Probable aquaporin PIP-type 7a OS=Pisum sativum GN=TRG-31 PE=2 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 1.737e-32
Identity = 73/139 (52.52%), Postives = 82/139 (58.99%), Query Frame = 3
Query:  120 FPMAKDTGVVEHGSYSAKDYTDPPPEPLFHAEELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILCIAWGFGGMIFVLVYCTDGISGGHINPAVTIGLFLVRKVSMVRAVMYMVAHCLVAI 536
            FP  +  G+        KDY +PPP PLF   ELT WSFYRA IAEFIA            +G   ++        C  VGI  IAW FGGMIF LVYCT GISGGHINPAVT GLFL RK+S+ RA+ YMV   L AI
Sbjct:   15 FPERQPLGIAAQSQDEPKDYQEPPPAPLFEPSELTSWSFYRAGIAEFIATFLFLYITVLTVMGVVRESSK------CKTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYMVMQVLGAI 147          
BLAST of FC876299 vs. ExPASy Swiss-Prot
Match: PIP12_MAIZE (Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.737e-32
Identity = 71/139 (51.08%), Postives = 84/139 (60.43%), Query Frame = 3
Query:  120 FPMAKDTGVVEHGSYSAKDYTDPPPEPLFHAEELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILCIAWGFGGMIFVLVYCTDGISGGHINPAVTIGLFLVRKVSMVRAVMYMVAHCLVAI 536
            F   +  G    G+   KDY +PPP PLF   EL  WSFYRA IAEF+A            +G       +K+   CA VGI  IAW FGGMIF LVYCT GISGGHINPAVT GLFL RK+S+ RA+ Y++  CL A+
Sbjct:   15 FSERQPIGTAAQGAADDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFVATFLFLYITILTVMGV------SKSTSKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYIIMQCLGAV 147          
BLAST of FC876299 vs. ExPASy Swiss-Prot
Match: PIP11_ORYSJ (Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica GN=PIP1-1 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.737e-32
Identity = 72/132 (54.55%), Postives = 82/132 (62.12%), Query Frame = 3
Query:  141 GVVEHGSYSAKDYTDPPPEPLFHAEELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILCIAWGFGGMIFVLVYCTDGISGGHINPAVTIGLFLVRKVSMVRAVMYMVAHCLVAI 536
            G    G+   KDY +PPP PLF   EL  WSFYRA IAEF+A            +G       +K+   CA VGI  IAW FGGMIF LVYCT GISGGHINPAVT GLFL RK+S+ RA+ Y+V  CL AI
Sbjct:   22 GTAAQGAGDDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFVATFLFLYITILTVMGV------SKSSSKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIVMQCLGAI 147          
BLAST of FC876299 vs. ExPASy Swiss-Prot
Match: PIP13_ORYSJ (Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica GN=PIP1-3 PE=2 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 2.963e-32
Identity = 71/122 (58.20%), Postives = 78/122 (63.93%), Query Frame = 3
Query:  171 KDYTDPPPEPLFHAEELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILCIAWGFGGMIFVLVYCTDGISGGHINPAVTIGLFLVRKVSMVRAVMYMVAHCLVAI 536
            KDY +PP  P+F  EELT WSFYRA IAEF+A            +G        K+   CA VGI  IAW FGGMIF LVYCT GISGGHINPAVT GLFL RK+S+ RAV YM   CL AI
Sbjct:   31 KDYREPPAAPVFEVEELTSWSFYRAGIAEFVATFLFLYISILTVMGVN------KSASKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMAMQCLGAI 146          
BLAST of FC876299 vs. ExPASy Swiss-Prot
Match: PIP12_ORYSJ (Probable aquaporin PIP1-2 OS=Oryza sativa subsp. japonica GN=PIP1-2 PE=2 SV=3)

HSP 1 Score: 137.502 bits (345), Expect = 3.869e-32
Identity = 75/139 (53.96%), Postives = 83/139 (59.71%), Query Frame = 3
Query:  120 FPMAKDTGVVEHGSYSAKDYTDPPPEPLFHAEELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILCIAWGFGGMIFVLVYCTDGISGGHINPAVTIGLFLVRKVSMVRAVMYMVAHCLVAI 536
            F   +  G    GS   KDY +PPP PLF   EL  WSFYRA IAEF+A            +G  + T        CA VGI  IAW FGGMIF LVYCT GISGGHINPAVT GLFL RK+S+ RA+ YMV  CL AI
Sbjct:   15 FSERQPIGTAAQGS-DDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVNNSTSK------CATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAI 146          
The following BLAST results are available for this feature:
BLAST of FC876299 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
PIP28_ARATH8.050e-3863.36Probable aquaporin PIP2-8 OS=Arabidopsis thaliana ... [more]
PIP1_ATRCA2.342e-3758.39Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1[more]
PIP27_ORYSJ2.863e-3558.33Probable aquaporin PIP2-7 OS=Oryza sativa subsp. j... [more]
PIP15_MAIZE5.399e-3460.66Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1[more]
PIP14_ARATH1.018e-3260.66Probable aquaporin PIP1-4 OS=Arabidopsis thaliana ... [more]
PIP2_PEA1.737e-3252.52Probable aquaporin PIP-type 7a OS=Pisum sativum GN... [more]
PIP12_MAIZE1.737e-3251.08Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1[more]
PIP11_ORYSJ1.737e-3254.55Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica G... [more]
PIP13_ORYSJ2.963e-3258.20Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica ... [more]
PIP12_ORYSJ3.869e-3253.96Probable aquaporin PIP1-2 OS=Oryza sativa subsp. j... [more]

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Properties
Property NameValue
Genbank descriptionC32003B01EF DevOvary1 Citrus clementina cDNA clone C32003B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876299 ID=FC876299; Name=FC876299; organism=Citrus clementina; type=EST; length=539bp
AAAACTAGCAAAAAAAAAGCAAAAGAAAAAGAAAAAGGAAAAGGCTTCTC
TCTCGCTGTGCTTGTGGCTTTGCAGTGCTCTCAGATTTCTCTGTTTCTCT
CCAAATCATTGTTACTGGTTTTCCAATGGCGAAGGACACTGGGGTGGTAG
AGCACGGCTCATATTCAGCCAAGGACTACACGGACCCACCGCCGGAGCCG
CTATTCCACGCCGAGGAGCTGACCAAATGGTCATTCTACAGAGCCTTGAT
AGCTGAGTTCATAGCAACCCTGCTCTTTCTTTACGTCACTGTCTTGACTG
TCATTGGCTACAAAAGCCAGACCGATCCCGCCAAGAACGTCGACGGCTGT
GCCGGCGTCGGCATCCTCTGTATCGCCTGGGGCTTCGGCGGCATGATCTT
TGTCCTCGTTTACTGCACCGACGGTATCTCAGGTGGTCACATTAACCCGG
CAGTGACGATCGGACTATTCTTGGTCCGCAAGGTGTCGATGGTCCGTGCT
GTGATGTACATGGTGGCGCACTGCCTTGTTGCTATCTCC
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