FC876299

Overview
NameFC876299
Unique NameFC876299
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length539
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10210 contig Ccv1_Contig10210:9..547. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876299 vs. ExPASy Swiss-Prot
Match: PIP12_ARATH (Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 5.054e-32
Identity = 75/139 (53.96%), Postives = 86/139 (61.87%), Query Frame = 3
Query:  120 FPMAKDTGVVEHGSYSAKDYTDPPPEPLFHAEELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILCIAWGFGGMIFVLVYCTDGISGGHINPAVTIGLFLVRKVSMVRAVMYMVAHCLVAI 536
            FP  +  G     + S KDY +PPP PLF   EL  WSF+RA IAEFIA            +G K      ++ + CA VGI  IAW FGGMIF LVYCT GISGGHINPAVT GLFL RK+S+ RAV Y+V  CL AI
Sbjct:   15 FPERQPIGT---SAQSDKDYKEPPPAPLFEPGELASWSFWRAGIAEFIATFLFLYITVLTVMGVK------RSPNMCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVYYIVMQCLGAI 144          
BLAST of FC876299 vs. ExPASy Swiss-Prot
Match: PIP1_SOLLC (Probable aquaporin PIP-type pTOM75 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 6.600e-32
Identity = 71/135 (52.59%), Postives = 86/135 (63.70%), Query Frame = 3
Query:  132 KDTGVVEHGSYSAKDYTDPPPEPLFHAEELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILCIAWGFGGMIFVLVYCTDGISGGHINPAVTIGLFLVRKVSMVRAVMYMVAHCLVAI 536
            ++T  +   + + KDY +PPP PLF   EL+ WSFYRA IAEF+A            +G K      ++   C+ VGI  +AW FGGMIF LVYCT GISGGHINPAVT GLFL RK+S+ RAV YMV  CL AI
Sbjct:   17 RETQPLGTAAQTDKDYKEPPPAPLFEPGELSSWSFYRAGIAEFMATFLFLYITILTVMGLK------RSDSLCSSVGIQGVAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMVMQCLGAI 145          
BLAST of FC876299 vs. ExPASy Swiss-Prot
Match: PIP13_ARATH (Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3 PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 6.600e-32
Identity = 73/122 (59.84%), Postives = 80/122 (65.57%), Query Frame = 3
Query:  171 KDYTDPPPEPLFHAEELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILCIAWGFGGMIFVLVYCTDGISGGHINPAVTIGLFLVRKVSMVRAVMYMVAHCLVAI 536
            KDY +PPP P F   EL+ WSFYRA IAEFIA            +G K     A N+  CA VGI  IAW FGGMIF LVYCT GISGGHINPAVT GLFL RK+S+ RAV Y+V  CL AI
Sbjct:   29 KDYKEPPPAPFFEPGELSSWSFYRAGIAEFIATFLFLYITVLTVMGVKR----APNM--CASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYIVMQCLGAI 144          
BLAST of FC876299 vs. ExPASy Swiss-Prot
Match: PIP13_MAIZE (Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 8.620e-32
Identity = 69/122 (56.56%), Postives = 79/122 (64.75%), Query Frame = 3
Query:  171 KDYTDPPPEPLFHAEELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILCIAWGFGGMIFVLVYCTDGISGGHINPAVTIGLFLVRKVSMVRAVMYMVAHCLVAI 536
            KDY +PPP PLF   EL  WSFYRA IAEF+A            +G       +K+   CA VGI  IAW FGGMIF LVYCT GISGGHINPAVT GLFL RK+S+ RA+ Y++  CL AI
Sbjct:   35 KDYKEPPPAPLFEPGELKSWSFYRAGIAEFVATFLFLYITVLTVMGV------SKSTSKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIIMQCLGAI 150          
BLAST of FC876299 vs. ExPASy Swiss-Prot
Match: PIP15_ARATH (Probable aquaporin PIP1-5 OS=Arabidopsis thaliana GN=PIP1-5 PE=2 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 1.920e-31
Identity = 72/123 (58.54%), Postives = 80/123 (65.04%), Query Frame = 3
Query:  168 AKDYTDPPPEPLFHAEELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILCIAWGFGGMIFVLVYCTDGISGGHINPAVTIGLFLVRKVSMVRAVMYMVAHCLVAI 536
            +KDY +PPP P F   EL  WSFYRA IAEFIA            +G K     A N+  CA VGI  IAW FGGMIF LVYCT GISGGHINPAVT GLFL RK+S+ RA+ Y+V  CL AI
Sbjct:   29 SKDYKEPPPAPFFEPGELKSWSFYRAGIAEFIATFLFLYVTVLTVMGVKR----APNM--CASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYIVMQCLGAI 145          
BLAST of FC876299 vs. ExPASy Swiss-Prot
Match: PIP11_VICFA (Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 2.508e-31
Identity = 73/139 (52.52%), Postives = 86/139 (61.87%), Query Frame = 3
Query:  120 FPMAKDTGVVEHGSYSAKDYTDPPPEPLFHAEELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILCIAWGFGGMIFVLVYCTDGISGGHINPAVTIGLFLVRKVSMVRAVMYMVAHCLVAI 536
            FP  +  G     + S KDY +PPP P F   EL+ WSF+RA IAEFIA            +G K      ++ + CA VGI  IAW FGGMIF LVYCT GISGGHINPAVT GLFL RK+S+ RA+ Y+V  CL AI
Sbjct:   15 FPERQPIGT---SAQSDKDYKEPPPAPFFEPGELSSWSFWRAGIAEFIATFLFLYITVLTVMGVK------RSPNMCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALYYIVMQCLGAI 144          
BLAST of FC876299 vs. ExPASy Swiss-Prot
Match: PIP11_ARATH (Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 2.508e-31
Identity = 73/139 (52.52%), Postives = 86/139 (61.87%), Query Frame = 3
Query:  120 FPMAKDTGVVEHGSYSAKDYTDPPPEPLFHAEELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILCIAWGFGGMIFVLVYCTDGISGGHINPAVTIGLFLVRKVSMVRAVMYMVAHCLVAI 536
            FP  +  G     + S KDY +PPP P F   EL+ WSF+RA IAEFIA            +G K      ++ + CA VGI  IAW FGGMIF LVYCT GISGGHINPAVT GLFL RK+S+ RA+ Y+V  CL AI
Sbjct:   15 FPERQPIGT---SAQSDKDYKEPPPAPFFEPGELSSWSFWRAGIAEFIATFLFLYITVLTVMGVK------RSPNMCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALYYIVMQCLGAI 144          
BLAST of FC876299 vs. ExPASy Swiss-Prot
Match: PIP16_MAIZE (Aquaporin PIP1-6 OS=Zea mays GN=PIP1-6 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.773e-30
Identity = 66/122 (54.10%), Postives = 79/122 (64.75%), Query Frame = 3
Query:  171 KDYTDPPPEPLFHAEELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILCIAWGFGGMIFVLVYCTDGISGGHINPAVTIGLFLVRKVSMVRAVMYMVAHCLVAI 536
            +DY++PP  PLF A EL+ WSFYRA IAEF+A            +G       +K+   C  VGI  IAW FGGMIF LVYCT G+SGGHINPAVT GL L RK+S+ RAV Y+V  CL A+
Sbjct:   37 RDYSEPPAAPLFEASELSSWSFYRAGIAEFVATFLFLYVTVLTVMGV------SKSPSKCGTVGIQGIAWAFGGMIFALVYCTAGVSGGHINPAVTFGLLLARKLSLTRAVYYVVMQCLGAV 152          
BLAST of FC876299 vs. ExPASy Swiss-Prot
Match: PIP28_ORYSJ (Probable aquaporin PIP2-8 OS=Oryza sativa subsp. japonica GN=PIP2-8 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 6.830e-29
Identity = 65/122 (53.28%), Postives = 76/122 (62.30%), Query Frame = 3
Query:  171 KDYTDPPPEPLFHAEELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILCIAWGFGGMIFVLVYCTDGISGGHINPAVTIGLFLVRKVSMVRAVMYMVAHCLVAI 536
            KDY DPPP PL    EL KWS YRA IAEF A            IG K Q+       G  G G+L IAW FGG+IFVLVYCT GISGGH+NPAVT  + L R+VS+ RA +Y +A C+ A+
Sbjct:   12 KDYQDPPPAPLVDTGELGKWSLYRAAIAEFTATLLLVCISVSTVIGEKRQS-------GEGGAGVLGIAWAFGGLIFVLVYCTAGISGGHMNPAVTFAMVLARRVSLPRAALYTMAQCVGAV 126          
BLAST of FC876299 vs. ExPASy Swiss-Prot
Match: PIP11_MAIZE (Aquaporin PIP1-1 OS=Zea mays GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.522e-28
Identity = 67/122 (54.92%), Postives = 76/122 (62.30%), Query Frame = 3
Query:  171 KDYTDPPPEPLFHAEELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILCIAWGFGGMIFVLVYCTDGISGGHINPAVTIGLFLVRKVSMVRAVMYMVAHCLVAI 536
            KDY +PPP PLF   EL  WSFYR  IAEF+A            +G       +K+   CA VGI  IAW FGGMI  LVYCT GISG HINPAVT GLFL RK+S+ RAV Y++  CL AI
Sbjct:   31 KDYKEPPPAPLFEPGELKSWSFYRPGIAEFVATFLFLYISILTVMGV------SKSTSKCATVGIQGIAWSFGGMILALVYCTAGISG-HINPAVTFGLFLARKLSLTRAVFYIIMQCLGAI 145          
The following BLAST results are available for this feature:
BLAST of FC876299 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
PIP12_ARATH5.054e-3253.96Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2... [more]
PIP1_SOLLC6.600e-3252.59Probable aquaporin PIP-type pTOM75 OS=Solanum lyco... [more]
PIP13_ARATH6.600e-3259.84Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3... [more]
PIP13_MAIZE8.620e-3256.56Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2... [more]
PIP15_ARATH1.920e-3158.54Probable aquaporin PIP1-5 OS=Arabidopsis thaliana ... [more]
PIP11_VICFA2.508e-3152.52Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1[more]
PIP11_ARATH2.508e-3152.52Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1... [more]
PIP16_MAIZE2.773e-3054.10Aquaporin PIP1-6 OS=Zea mays GN=PIP1-6 PE=2 SV=1[more]
PIP28_ORYSJ6.830e-2953.28Probable aquaporin PIP2-8 OS=Oryza sativa subsp. j... [more]
PIP11_MAIZE1.522e-2854.92Aquaporin PIP1-1 OS=Zea mays GN=PIP1-1 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC32003B01EF DevOvary1 Citrus clementina cDNA clone C32003B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876299 ID=FC876299; Name=FC876299; organism=Citrus clementina; type=EST; length=539bp
AAAACTAGCAAAAAAAAAGCAAAAGAAAAAGAAAAAGGAAAAGGCTTCTC
TCTCGCTGTGCTTGTGGCTTTGCAGTGCTCTCAGATTTCTCTGTTTCTCT
CCAAATCATTGTTACTGGTTTTCCAATGGCGAAGGACACTGGGGTGGTAG
AGCACGGCTCATATTCAGCCAAGGACTACACGGACCCACCGCCGGAGCCG
CTATTCCACGCCGAGGAGCTGACCAAATGGTCATTCTACAGAGCCTTGAT
AGCTGAGTTCATAGCAACCCTGCTCTTTCTTTACGTCACTGTCTTGACTG
TCATTGGCTACAAAAGCCAGACCGATCCCGCCAAGAACGTCGACGGCTGT
GCCGGCGTCGGCATCCTCTGTATCGCCTGGGGCTTCGGCGGCATGATCTT
TGTCCTCGTTTACTGCACCGACGGTATCTCAGGTGGTCACATTAACCCGG
CAGTGACGATCGGACTATTCTTGGTCCGCAAGGTGTCGATGGTCCGTGCT
GTGATGTACATGGTGGCGCACTGCCTTGTTGCTATCTCC
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