FC876300

Overview
NameFC876300
Unique NameFC876300
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length558
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: DHH1_PICST (ATP-dependent RNA helicase DHH1 OS=Pichia stipitis GN=DHH1 PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 6.489e-33
Identity = 81/180 (45.00%), Postives = 108/180 (60.00%), Query Frame = 3 
Query:    6 QSGTGNPATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTVENEE 545
            ++GTG  A+F    LQQ+   L + QAL+L PTRELA Q  +V+R LG +LG++     GGTS+++D   L   VHV+VGTPGRV D+  R         +FV+DEAD+MLSR FK  I  I +  P   Q  +FSAT P        K +NKP  I + +DELTL GI Q+Y  VE ++
Sbjct:   75 KNGTGKTASFIIPSLQQIKPKLNKIQALILVPTRELALQTSQVVRTLGKHLGIQCMVTTGGTSLKDDILRLNDPVHVLVGTPGRVLDLAARSVADLSECPLFVMDEADKMLSREFKGIIEQILEFFPKNRQSLLFSATFPLAVKSFMDKHLNKPYEINL-MDELTLRGITQYYAFVEEKQ 253
[Close]
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: EXP9_STRR6 (Probable ATP-dependent RNA helicase exp9 OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=exp9 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 4.206e-32
Identity = 73/180 (40.56%), Postives = 110/180 (61.11%), Query Frame = 3 
Query:    6 QSGTGNPATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTVENEE 545
            Q+GTG  A F    L+++       QALV+APTRELA Q ++ +   G   GVKV +  GG+S+ +  + L++G H+VVGTPGR+ D+++R++L+   I+  +LDEADEML+ GF + I  I   +P   Q  +FSATMP     I  +FM  P  + +   ELT E + Q+Y+ V+ +E
Sbjct:   46 QTGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGVQFMKAPEHVKIAAKELTTELVDQYYIRVKEQE 225
[Close]
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: EXP9_STRPN (Probable ATP-dependent RNA helicase exp9 OS=Streptococcus pneumoniae GN=exp9 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 4.206e-32
Identity = 73/180 (40.56%), Postives = 110/180 (61.11%), Query Frame = 3 
Query:    6 QSGTGNPATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTVENEE 545
            Q+GTG  A F    L+++       QALV+APTRELA Q ++ +   G   GVKV +  GG+S+ +  + L++G H+VVGTPGR+ D+++R++L+   I+  +LDEADEML+ GF + I  I   +P   Q  +FSATMP     I  +FM  P  + +   ELT E + Q+Y+ V+ +E
Sbjct:   46 QTGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGVQFMKAPEHVKIAAKELTTELVDQYYIRVKEQE 225
[Close]
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: DHH1_CANAL (ATP-dependent RNA helicase DHH1 OS=Candida albicans GN=DHH1 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 5.493e-32
Identity = 79/180 (43.89%), Postives = 108/180 (60.00%), Query Frame = 3 
Query:    6 QSGTGNPATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTVENEE 545
            ++GTG  A+F    LQ +   L + QAL+L PTRELA Q  +V+R LG ++G +     GGTS+R+D   L   VH++VGTPGRV D+  R+ +      +FV+DEAD+MLSR FK  I  I +  P   Q  +FSAT P        K + KP  I + +DELTL+GI QFY  VE ++
Sbjct:   75 KNGTGKTASFIIPCLQLVKPKLNKVQALILVPTRELALQTSQVVRTLGKHVGTQCMVTTGGTSLRDDIVRLHDPVHILVGTPGRVLDLAARKVVDLSECPLFVMDEADKMLSREFKGIIEQILEFFPPNRQALLFSATFPLAVKSFMDKHLTKPYEINL-MDELTLKGISQFYAFVEEKQ 253
[Close]
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: DHH1_PICGU (ATP-dependent RNA helicase DHH1 OS=Pichia guilliermondii GN=DHH1 PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.224e-31
Identity = 79/180 (43.89%), Postives = 105/180 (58.33%), Query Frame = 3 
Query:    6 QSGTGNPATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTVENEE 545
            ++GTG  A+F    LQQ+   L + Q L+L PTRELA Q  +V++ LG +L ++     GGT +R+D   L   VH++VGTPGRV D+  R         MFV+DEAD+MLSR FK  I  I +  P   Q  +FSAT P        K +NKP  I + +DELTL GI QFY  VE ++
Sbjct:   74 KNGTGKTASFIIPALQQVKTKLNKIQVLILVPTRELALQTSQVVKTLGKHLKLQCMVTTGGTLLRDDVMRLDEPVHILVGTPGRVLDLAARSIADFSECPMFVMDEADKMLSREFKGIIEQILEFFPKNRQSLLFSATFPLAVKSFMDKHLNKPYEINL-MDELTLRGISQFYAFVEEKQ 252
[Close]
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: DHH1_ASHGO (ATP-dependent RNA helicase DHH1 OS=Ashbya gossypii GN=DHH1 PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.224e-31
Identity = 77/180 (42.78%), Postives = 106/180 (58.89%), Query Frame = 3 
Query:    6 QSGTGNPATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTVENEE 545
            ++GTG  A F    L+ +   + + QAL++ PTRELA Q  +V+R LG + G+      GGT++R+D   L   VHV+VGTPGRV D+  R+        +FV+DEAD+MLSR FK  +  I   LP   Q  +FSAT P    E   K +NKP  I + +DELTL+GI Q+Y  VE  +
Sbjct:   74 KNGTGKTAAFVIPTLEIVKPKVNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDIMRLNEPVHVLVGTPGRVLDLASRKVADLSECSLFVMDEADKMLSRDFKSLVEQILSFLPQNHQSLLFSATFPLTVKEFMVKHLNKPYEINL-MDELTLKGITQYYAFVEERQ 252
[Close]
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: CSHA_GEOKA (DEAD-box ATP-dependent RNA helicase cshA OS=Geobacillus kaustophilus GN=cshA PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.224e-31
Identity = 74/180 (41.11%), Postives = 109/180 (60.56%), Query Frame = 3 
Query:    6 QSGTGNPATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTVENEE 545
            Q+GTG  A F   I+++++      QALV+APTRELA Q+ + +  +G    V+V    GG  +    R L+   HV+VGTPGR+ D + R +LR +++   VLDEADEML+ GF + I  I   +PA+ Q  +FSATMP     I  +FMN+P  + VK  E+T+  I+Q+YL V  ++
Sbjct:   47 QTGTGKTAAFGIPIVEKVNVKNSAVQALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQIRALKKHPHVIVGTPGRIIDHINRGTLRLEHVHTVVLDEADEMLNMGFIEDIEAILSHVPAERQTLLFSATMPDPIRRIAERFMNEPELVKVKAKEMTVPNIQQYYLEVHEKK 226
[Close]
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: DHH1_DEBHA (ATP-dependent RNA helicase DHH1 OS=Debaryomyces hansenii GN=DHH1 PE=3 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 2.087e-31
Identity = 80/180 (44.44%), Postives = 106/180 (58.89%), Query Frame = 3 
Query:    6 QSGTGNPATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTVENEE 545
            ++GTG  A+F    LQQ    + + QAL+L PTRELA Q  +V+R LG +LG++     GGTS+R+D   L   VHV+VGTPGRV D+  R+        +FV+DEAD+MLSR FK  I  I    P   Q  +FSAT P        + + KP  I + +DELTL GI QFY  VE ++
Sbjct:   75 KNGTGKTASFVIPCLQQARPKVNKIQALILVPTRELALQTSQVVRTLGKHLGLQCMVTTGGTSLRDDILRLNDPVHVLVGTPGRVLDLASRKVADLSECPLFVMDEADKMLSREFKGIIEQILAFFPTTRQSLLFSATFPLAVKSFMDQHLTKPYEINL-MDELTLRGISQFYAFVEEKQ 253
[Close]
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: DHH1_KLULA (ATP-dependent RNA helicase DHH1 OS=Kluyveromyces lactis GN=DHH1 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 4.650e-31
Identity = 75/180 (41.67%), Postives = 107/180 (59.44%), Query Frame = 3 
Query:    6 QSGTGNPATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTVENEE 545
            ++GTG  A F    L+++   L + QAL++ PTRELA Q  +V+R LG + G+      GGT++R+D   L   VH++VGTPGRV D+  R+        +F++DEAD+MLSR FK     I   LP + Q+ +FSAT P    E   K +  P  I + +DELTL+GI QFY  VE ++
Sbjct:   81 KNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDIMRLNEPVHILVGTPGRVLDLASRRVTDLSECHLFIMDEADKMLSRDFKVLAEQILGFLPERRQLLLFSATFPVTVKEFMVKHLKNPHEINL-MDELTLKGISQFYAFVEEKQ 259
[Close]
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: DHH1_CANGA (ATP-dependent RNA helicase DHH1 OS=Candida glabrata GN=DHH1 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 6.073e-31
Identity = 77/180 (42.78%), Postives = 107/180 (59.44%), Query Frame = 3 
Query:    6 QSGTGNPATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTVENEE 545
            ++GTG  A F    L+++   L + QAL++ PTRELA Q  +V+R LG + GV      GGT++R+D   L   VHV+VGTPGRV D+  R+        +FV+DEAD+MLSR FK  I  +   LP   Q  +FSAT P    E   K ++KP  I + ++ELTL+GI Q+Y  VE  +
Sbjct:   76 KNGTGKTAAFVIPTLEKIKPKLNKIQALIMVPTRELALQTSQVIRTLGRHCGVSCMVTTGGTNLRDDILRLNETVHVLVGTPGRVLDLASRKVADLSECSLFVMDEADKMLSRDFKTIIEQVLTFLPKAHQSLLFSATFPLTVKEFMVKHLHKPYEINL-MEELTLKGITQYYAFVEERQ 254
The following BLAST results are available for this feature:
BLAST of FC876300 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DHH1_PICST6.489e-3345.00ATP-dependent RNA helicase DHH1 OS=Pichia stipitis... [more]
EXP9_STRR64.206e-3240.56Probable ATP-dependent RNA helicase exp9 OS=Strept... [more]
EXP9_STRPN4.206e-3240.56Probable ATP-dependent RNA helicase exp9 OS=Strept... [more]
DHH1_CANAL5.493e-3243.89ATP-dependent RNA helicase DHH1 OS=Candida albican... [more]
DHH1_PICGU1.224e-3143.89ATP-dependent RNA helicase DHH1 OS=Pichia guillier... [more]
DHH1_ASHGO1.224e-3142.78ATP-dependent RNA helicase DHH1 OS=Ashbya gossypii... [more]
CSHA_GEOKA1.224e-3141.11DEAD-box ATP-dependent RNA helicase cshA OS=Geobac... [more]
DHH1_DEBHA2.087e-3144.44ATP-dependent RNA helicase DHH1 OS=Debaryomyces ha... [more]
DHH1_KLULA4.650e-3141.67ATP-dependent RNA helicase DHH1 OS=Kluyveromyces l... [more]
DHH1_CANGA6.073e-3142.78ATP-dependent RNA helicase DHH1 OS=Candida glabrat... [more]

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Properties
Property NameValue
Genbank descriptionC32003B03EF DevOvary1 Citrus clementina cDNA clone C32003B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876300 ID=FC876300; Name=FC876300; organism=Citrus clementina; type=EST; length=558bp
AGGATCAGTCTGGAACTGGGAATCCAGCAACTTTCTGCTCTGGAATTTTG
CAGCAACTTGATTATGGTCTTGTCCAATGTCAGGCCCTGGTATTGGCACC
CACTAGGGAACTAGCTCAACAGATTGAGAAAGTAATGAGGGCACTTGGTG
ATTATCTTGGTGTTAAGGTTCATGCTTGTGTCGGTGGGACAAGTGTTCGC
GAGGATCAGCGCATTCTTCAAGCTGGTGTTCATGTTGTTGTTGGCACTCC
TGGTCGTGTGTTTGACATGCTGCGCCGACAGTCTTTACGCCCTGATTACA
TTAAGATGTTTGTACTGGATGAGGCTGATGAAATGCTTTCCCGTGGCTTT
AAGGATCAGATCTATGATATTTTCCAGCTGCTTCCAGCTAAAGTTCAAGT
GGGGGTTTTCTCTGCTACAATGCCTCCTGAGGCCTTGGAGATTACAAGGA
AGTTTATGAACAAGCCTGCGAGAATCTTGGTTAAACTTGATGAACTCACC
CTTGAGGGTATCAAGCAATTTTATCTCACTGTTGAGAACGAAGAATGGAA
GCTTGAAA
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