FC876300

Overview
NameFC876300
Unique NameFC876300
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length558
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11722 contig Ccv1_Contig11722:378..935. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: IF4A2_CHICK (Eukaryotic initiation factor 4A-II OS=Gallus gallus GN=EIF4A2 PE=2 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 2.610e-66
Identity = 127/185 (68.65%), Postives = 149/185 (80.54%), Query Frame = 3 
Query:    6 QSGTGNPATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGV-HVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTVENEEWKLE 557
            QSGTG  ATF   ILQQL+  L + QALVLAPTRELAQQI+KV+ ALGDY+G   HAC+GGT+VR + + LQA   H+VVGTPGRVFDML R+ L P +IKMFVLDEADEMLSRGFKDQIY+IFQ L   +QV + SATMP + LE+T+KFM +P RILVK +ELTLEGIKQFY+ VE EEWKL+
Sbjct:   78 QSGTGKTATFAISILQQLEIDLKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLSTNIQVVLLSATMPMDVLEVTKKFMREPIRILVKKEELTLEGIKQFYINVEREEWKLD 262
[Close]
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: IF4A_SCLS1 (ATP-dependent RNA helicase eIF4A OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=tif1 PE=3 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 5.815e-66
Identity = 123/184 (66.85%), Postives = 148/184 (80.43%), Query Frame = 3 
Query:    6 QSGTGNPATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTVENEEWKLE 557
            QSGTG  ATF   +LQ+LD  + QCQAL+LAPTRELAQQI+KV+ A+GD++ V+ HAC+GGTSVR+D + LQ G  VVVGTPGRV DM++R+ L+ D +KMFVLDEADEMLSRGF +QIYDIFQLLP   QV + SATMP + LE+T KFM  P RILVK  ELTLEGIKQFY+ VE E+WKL+
Sbjct:   70 QSGTGKTATFSISVLQKLDPNVKQCQALILAPTRELAQQIQKVVVAIGDFMNVECHACIGGTSVRDDMKALQDGPQVVVGTPGRVHDMIQRRFLKTDSMKMFVLDEADEMLSRGFTEQIYDIFQLLPQSTQVVLLSATMPQDVLEVTTKFMRDPVRILVKKAELTLEGIKQFYIAVEKEDWKLD 253
[Close]
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: IF4A_BOTFB (ATP-dependent RNA helicase eIF4A OS=Botryotinia fuckeliana (strain B05.10) GN=tif1 PE=3 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 5.815e-66
Identity = 123/184 (66.85%), Postives = 148/184 (80.43%), Query Frame = 3 
Query:    6 QSGTGNPATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTVENEEWKLE 557
            QSGTG  ATF   +LQ+LD  + QCQAL+LAPTRELAQQI+KV+ A+GD++ V+ HAC+GGTSVR+D + LQ G  VVVGTPGRV DM++R+ L+ D +KMFVLDEADEMLSRGF +QIYDIFQLLP   QV + SATMP + LE+T KFM  P RILVK  ELTLEGIKQFY+ VE E+WKL+
Sbjct:   70 QSGTGKTATFSISVLQKLDPNVKQCQALILAPTRELAQQIQKVVVAIGDFMNVECHACIGGTSVRDDMKALQDGPQVVVGTPGRVHDMIQRRFLKTDSMKMFVLDEADEMLSRGFTEQIYDIFQLLPQSTQVVLLSATMPQDVLEVTTKFMRDPVRILVKKAELTLEGIKQFYIAVEKEDWKLD 253
[Close]
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: IF4A_PHANO (ATP-dependent RNA helicase eIF4A OS=Phaeosphaeria nodorum GN=TIF1 PE=3 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 9.918e-66
Identity = 122/184 (66.30%), Postives = 147/184 (79.89%), Query Frame = 3 
Query:    6 QSGTGNPATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTVENEEWKLE 557
            QSGTG  ATF    LQ++D  +  CQAL+LAPTRELAQQI+KV+ A+GD++ V  HAC+GGTSVR+D + LQ G  VVVGTPGRV DM++R+ L+ D++KMFVLDEADEMLSRGF +QIYDIFQLLP   QV + SATMP + LE+T KFM  P RILVK DELTLEGIKQFY+ VE E+WKL+
Sbjct:   68 QSGTGKTATFSISTLQKIDSNVKACQALILAPTRELAQQIQKVVVAIGDFMDVACHACIGGTSVRDDMKALQDGPQVVVGTPGRVHDMIQRRVLKTDHMKMFVLDEADEMLSRGFTEQIYDIFQLLPQSTQVVLLSATMPQDVLEVTTKFMRDPVRILVKKDELTLEGIKQFYIAVEKEDWKLD 251
[Close]
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: IF4A_CHAGB (ATP-dependent RNA helicase eIF4A OS=Chaetomium globosum GN=TIF1 PE=3 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 9.918e-66
Identity = 120/184 (65.22%), Postives = 148/184 (80.43%), Query Frame = 3 
Query:    6 QSGTGNPATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTVENEEWKLE 557
            QSGTG  ATF   +LQ++D  +  CQAL+LAPTRELAQQI+KV+ A+GD++ ++ HAC+GGTSVR+D + LQ G  V+VGTPGRV DM++R+ L+ D +KMFVLDEADEMLSRGF +QIYDIFQLLP   QV + SATMP + LE+T KFM  P RILVK DELTLEGIKQFY+ VE E+WKL+
Sbjct:   69 QSGTGKTATFSISVLQKIDPTVKSCQALILAPTRELAQQIQKVVIAIGDFMNIECHACIGGTSVRDDMKALQDGPQVIVGTPGRVHDMIQRRILKTDQMKMFVLDEADEMLSRGFTEQIYDIFQLLPQSTQVVLLSATMPQDVLEVTTKFMRDPVRILVKKDELTLEGIKQFYIAVEKEDWKLD 252
[Close]
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: IF4A2_RAT (Eukaryotic initiation factor 4A-II OS=Rattus norvegicus GN=Eif4a2 PE=1 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 1.692e-65
Identity = 126/185 (68.11%), Postives = 147/185 (79.46%), Query Frame = 3 
Query:    6 QSGTGNPATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGV-HVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTVENEEWKLE 557
            QSGTG  ATF   ILQQL+    + QALVLAPTRELAQQI+KV+ ALGDY+G   HAC+GGT+VR + + LQA   H+VVGTPGRVFDML R+ L P +IKMFVLDEADEMLSRGFKDQIY+IFQ L   +QV + SATMP + LE+T+KFM  P RILVK +ELTLEGIKQFY+ VE EEWKL+
Sbjct:   78 QSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLD 262
[Close]
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: IF4A2_PONAB (Eukaryotic initiation factor 4A-II OS=Pongo abelii GN=EIF4A2 PE=2 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 1.692e-65
Identity = 126/185 (68.11%), Postives = 147/185 (79.46%), Query Frame = 3 
Query:    6 QSGTGNPATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGV-HVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTVENEEWKLE 557
            QSGTG  ATF   ILQQL+    + QALVLAPTRELAQQI+KV+ ALGDY+G   HAC+GGT+VR + + LQA   H+VVGTPGRVFDML R+ L P +IKMFVLDEADEMLSRGFKDQIY+IFQ L   +QV + SATMP + LE+T+KFM  P RILVK +ELTLEGIKQFY+ VE EEWKL+
Sbjct:   78 QSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLD 262
[Close]
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: IF4A2_MOUSE (Eukaryotic initiation factor 4A-II OS=Mus musculus GN=Eif4a2 PE=2 SV=2)

HSP 1 Score: 248.44 bits (633), Expect = 1.692e-65
Identity = 126/185 (68.11%), Postives = 147/185 (79.46%), Query Frame = 3 
Query:    6 QSGTGNPATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGV-HVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTVENEEWKLE 557
            QSGTG  ATF   ILQQL+    + QALVLAPTRELAQQI+KV+ ALGDY+G   HAC+GGT+VR + + LQA   H+VVGTPGRVFDML R+ L P +IKMFVLDEADEMLSRGFKDQIY+IFQ L   +QV + SATMP + LE+T+KFM  P RILVK +ELTLEGIKQFY+ VE EEWKL+
Sbjct:   78 QSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLD 262
[Close]
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: IF4A2_HUMAN (Eukaryotic initiation factor 4A-II OS=Homo sapiens GN=EIF4A2 PE=1 SV=2)

HSP 1 Score: 248.44 bits (633), Expect = 1.692e-65
Identity = 126/185 (68.11%), Postives = 147/185 (79.46%), Query Frame = 3 
Query:    6 QSGTGNPATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGV-HVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTVENEEWKLE 557
            QSGTG  ATF   ILQQL+    + QALVLAPTRELAQQI+KV+ ALGDY+G   HAC+GGT+VR + + LQA   H+VVGTPGRVFDML R+ L P +IKMFVLDEADEMLSRGFKDQIY+IFQ L   +QV + SATMP + LE+T+KFM  P RILVK +ELTLEGIKQFY+ VE EEWKL+
Sbjct:   78 QSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLD 262
[Close]
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: IF4A2_BOVIN (Eukaryotic initiation factor 4A-II OS=Bos taurus GN=EIF4A2 PE=2 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 1.692e-65
Identity = 126/185 (68.11%), Postives = 147/185 (79.46%), Query Frame = 3 
Query:    6 QSGTGNPATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGV-HVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTVENEEWKLE 557
            QSGTG  ATF   ILQQL+    + QALVLAPTRELAQQI+KV+ ALGDY+G   HAC+GGT+VR + + LQA   H+VVGTPGRVFDML R+ L P +IKMFVLDEADEMLSRGFKDQIY+IFQ L   +QV + SATMP + LE+T+KFM  P RILVK +ELTLEGIKQFY+ VE EEWKL+
Sbjct:   78 QSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLD 262
The following BLAST results are available for this feature:
BLAST of FC876300 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF4A2_CHICK2.610e-6668.65Eukaryotic initiation factor 4A-II OS=Gallus gallu... [more]
IF4A_SCLS15.815e-6666.85ATP-dependent RNA helicase eIF4A OS=Sclerotinia sc... [more]
IF4A_BOTFB5.815e-6666.85ATP-dependent RNA helicase eIF4A OS=Botryotinia fu... [more]
IF4A_PHANO9.918e-6666.30ATP-dependent RNA helicase eIF4A OS=Phaeosphaeria ... [more]
IF4A_CHAGB9.918e-6665.22ATP-dependent RNA helicase eIF4A OS=Chaetomium glo... [more]
IF4A2_RAT1.692e-6568.11Eukaryotic initiation factor 4A-II OS=Rattus norve... [more]
IF4A2_PONAB1.692e-6568.11Eukaryotic initiation factor 4A-II OS=Pongo abelii... [more]
IF4A2_MOUSE1.692e-6568.11Eukaryotic initiation factor 4A-II OS=Mus musculus... [more]
IF4A2_HUMAN1.692e-6568.11Eukaryotic initiation factor 4A-II OS=Homo sapiens... [more]
IF4A2_BOVIN1.692e-6568.11Eukaryotic initiation factor 4A-II OS=Bos taurus G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32003B03EF DevOvary1 Citrus clementina cDNA clone C32003B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876300 ID=FC876300; Name=FC876300; organism=Citrus clementina; type=EST; length=558bp
AGGATCAGTCTGGAACTGGGAATCCAGCAACTTTCTGCTCTGGAATTTTG
CAGCAACTTGATTATGGTCTTGTCCAATGTCAGGCCCTGGTATTGGCACC
CACTAGGGAACTAGCTCAACAGATTGAGAAAGTAATGAGGGCACTTGGTG
ATTATCTTGGTGTTAAGGTTCATGCTTGTGTCGGTGGGACAAGTGTTCGC
GAGGATCAGCGCATTCTTCAAGCTGGTGTTCATGTTGTTGTTGGCACTCC
TGGTCGTGTGTTTGACATGCTGCGCCGACAGTCTTTACGCCCTGATTACA
TTAAGATGTTTGTACTGGATGAGGCTGATGAAATGCTTTCCCGTGGCTTT
AAGGATCAGATCTATGATATTTTCCAGCTGCTTCCAGCTAAAGTTCAAGT
GGGGGTTTTCTCTGCTACAATGCCTCCTGAGGCCTTGGAGATTACAAGGA
AGTTTATGAACAAGCCTGCGAGAATCTTGGTTAAACTTGATGAACTCACC
CTTGAGGGTATCAAGCAATTTTATCTCACTGTTGAGAACGAAGAATGGAA
GCTTGAAA
back to top