FC876300

Overview
NameFC876300
Unique NameFC876300
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length558
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11722 contig Ccv1_Contig11722:378..935. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: IF4A1_RABIT (Eukaryotic initiation factor 4A-I (Fragment) OS=Oryctolagus cuniculus GN=EIF4A1 PE=1 SV=2)

HSP 1 Score: 248.44 bits (633), Expect = 1.692e-65
Identity = 125/185 (67.57%), Postives = 146/185 (78.92%), Query Frame = 3
Query:    6 QSGTGNPATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVR-EDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTVENEEWKLE 557
            QSGTG  ATF   ILQQ++  L   QALVLAPTRELAQQI+KV+ ALGDY+G   HAC+GGT+VR E Q++     H++VGTPGRVFDML R+ L P YIKMFVLDEADEMLSRGFKDQIYDIFQ L +  QV + SATMP + LE+T+KFM  P RILVK +ELTLEGI+QFY+ VE EEWKL+
Sbjct:   69 QSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLD 253          
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: IF4A1_PONAB (Eukaryotic initiation factor 4A-I OS=Pongo abelii GN=EIF4A1 PE=2 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 1.692e-65
Identity = 125/185 (67.57%), Postives = 146/185 (78.92%), Query Frame = 3
Query:    6 QSGTGNPATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVR-EDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTVENEEWKLE 557
            QSGTG  ATF   ILQQ++  L   QALVLAPTRELAQQI+KV+ ALGDY+G   HAC+GGT+VR E Q++     H++VGTPGRVFDML R+ L P YIKMFVLDEADEMLSRGFKDQIYDIFQ L +  QV + SATMP + LE+T+KFM  P RILVK +ELTLEGI+QFY+ VE EEWKL+
Sbjct:   77 QSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLD 261          
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: IF4A1_PANTR (Eukaryotic initiation factor 4A-I OS=Pan troglodytes GN=EIF4A1 PE=2 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 1.692e-65
Identity = 125/185 (67.57%), Postives = 146/185 (78.92%), Query Frame = 3
Query:    6 QSGTGNPATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVR-EDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTVENEEWKLE 557
            QSGTG  ATF   ILQQ++  L   QALVLAPTRELAQQI+KV+ ALGDY+G   HAC+GGT+VR E Q++     H++VGTPGRVFDML R+ L P YIKMFVLDEADEMLSRGFKDQIYDIFQ L +  QV + SATMP + LE+T+KFM  P RILVK +ELTLEGI+QFY+ VE EEWKL+
Sbjct:   77 QSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLD 261          
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: IF4A1_MOUSE (Eukaryotic initiation factor 4A-I OS=Mus musculus GN=Eif4a1 PE=2 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 1.692e-65
Identity = 125/185 (67.57%), Postives = 146/185 (78.92%), Query Frame = 3
Query:    6 QSGTGNPATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVR-EDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTVENEEWKLE 557
            QSGTG  ATF   ILQQ++  L   QALVLAPTRELAQQI+KV+ ALGDY+G   HAC+GGT+VR E Q++     H++VGTPGRVFDML R+ L P YIKMFVLDEADEMLSRGFKDQIYDIFQ L +  QV + SATMP + LE+T+KFM  P RILVK +ELTLEGI+QFY+ VE EEWKL+
Sbjct:   77 QSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLD 261          
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: IF4A1_MACFA (Eukaryotic initiation factor 4A-I OS=Macaca fascicularis GN=EIF4A1 PE=2 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 1.692e-65
Identity = 125/185 (67.57%), Postives = 146/185 (78.92%), Query Frame = 3
Query:    6 QSGTGNPATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVR-EDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTVENEEWKLE 557
            QSGTG  ATF   ILQQ++  L   QALVLAPTRELAQQI+KV+ ALGDY+G   HAC+GGT+VR E Q++     H++VGTPGRVFDML R+ L P YIKMFVLDEADEMLSRGFKDQIYDIFQ L +  QV + SATMP + LE+T+KFM  P RILVK +ELTLEGI+QFY+ VE EEWKL+
Sbjct:   77 QSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLD 261          
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: IF4A1_HUMAN (Eukaryotic initiation factor 4A-I OS=Homo sapiens GN=EIF4A1 PE=1 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 1.692e-65
Identity = 125/185 (67.57%), Postives = 146/185 (78.92%), Query Frame = 3
Query:    6 QSGTGNPATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVR-EDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTVENEEWKLE 557
            QSGTG  ATF   ILQQ++  L   QALVLAPTRELAQQI+KV+ ALGDY+G   HAC+GGT+VR E Q++     H++VGTPGRVFDML R+ L P YIKMFVLDEADEMLSRGFKDQIYDIFQ L +  QV + SATMP + LE+T+KFM  P RILVK +ELTLEGI+QFY+ VE EEWKL+
Sbjct:   77 QSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLD 261          
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: IF4A1_BOVIN (Eukaryotic initiation factor 4A-I OS=Bos taurus GN=EIF4A1 PE=2 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 1.692e-65
Identity = 125/185 (67.57%), Postives = 146/185 (78.92%), Query Frame = 3
Query:    6 QSGTGNPATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVR-EDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTVENEEWKLE 557
            QSGTG  ATF   ILQQ++  L   QALVLAPTRELAQQI+KV+ ALGDY+G   HAC+GGT+VR E Q++     H++VGTPGRVFDML R+ L P YIKMFVLDEADEMLSRGFKDQIYDIFQ L +  QV + SATMP + LE+T+KFM  P RILVK +ELTLEGI+QFY+ VE EEWKL+
Sbjct:   77 QSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLD 261          
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: IF4A_NEOFI (ATP-dependent RNA helicase eIF4A OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=tif1 PE=3 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 2.210e-65
Identity = 122/184 (66.30%), Postives = 146/184 (79.35%), Query Frame = 3
Query:    6 QSGTGNPATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTVENEEWKLE 557
            QSGTG  ATF    LQ+LD  +  CQAL+LAPTRELAQQI+KV+ A+GD++ ++ HAC+GGT+VRED + LQ G  VVVGTPGRV DM++R+ LR D +KMF+LDEADEMLSRGF +QIYDIFQLLP   QV + SATMP + LE+T KFM  P RILVK  ELTLEGIKQFY+ VE EEWKL+
Sbjct:   70 QSGTGKTATFSISALQKLDPNVKGCQALILAPTRELAQQIQKVVVAIGDFMNIECHACIGGTNVREDMKALQEGPQVVVGTPGRVQDMIQRRVLRTDNLKMFILDEADEMLSRGFTEQIYDIFQLLPQSTQVVLLSATMPQDVLEVTTKFMRDPVRILVKKQELTLEGIKQFYIAVEKEEWKLD 253          
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: IF4A_ASPFU (ATP-dependent RNA helicase eIF4A OS=Aspergillus fumigatus GN=tif1 PE=3 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 2.210e-65
Identity = 122/184 (66.30%), Postives = 146/184 (79.35%), Query Frame = 3
Query:    6 QSGTGNPATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTVENEEWKLE 557
            QSGTG  ATF    LQ+LD  +  CQAL+LAPTRELAQQI+KV+ A+GD++ ++ HAC+GGT+VRED + LQ G  VVVGTPGRV DM++R+ LR D +KMF+LDEADEMLSRGF +QIYDIFQLLP   QV + SATMP + LE+T KFM  P RILVK  ELTLEGIKQFY+ VE EEWKL+
Sbjct:   70 QSGTGKTATFSISALQKLDPNVKGCQALILAPTRELAQQIQKVVVAIGDFMNIECHACIGGTNVREDMKALQEGPQVVVGTPGRVQDMIQRRVLRTDNLKMFILDEADEMLSRGFTEQIYDIFQLLPQSTQVVLLSATMPQDVLEVTTKFMRDPVRILVKKQELTLEGIKQFYIAVEKEEWKLD 253          
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: IF4A_ASPCL (ATP-dependent RNA helicase eIF4A OS=Aspergillus clavatus GN=tif1 PE=3 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 6.429e-65
Identity = 121/184 (65.76%), Postives = 146/184 (79.35%), Query Frame = 3
Query:    6 QSGTGNPATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTVENEEWKLE 557
            QSGTG  ATF    LQ++D  L  CQAL+LAPTRELAQQI+KV+ A+GD++ ++ HAC+GGT+VRED + LQ G  VVVGTPGRV DM++R+ LR D +K+F+LDEADEMLSRGF +QIYDIFQLLP   QV + SATMP + LE+T KFM  P RILVK  ELTLEGIKQFY+ VE EEWKL+
Sbjct:   70 QSGTGKTATFSISALQKIDPNLKACQALILAPTRELAQQIQKVVVAIGDFMSLECHACIGGTNVREDMKALQDGPQVVVGTPGRVQDMIQRRVLRTDQMKLFILDEADEMLSRGFTEQIYDIFQLLPQSTQVVLLSATMPQDVLEVTTKFMRDPVRILVKKQELTLEGIKQFYIAVEKEEWKLD 253          
The following BLAST results are available for this feature:
BLAST of FC876300 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF4A1_RABIT1.692e-6567.57Eukaryotic initiation factor 4A-I (Fragment) OS=Or... [more]
IF4A1_PONAB1.692e-6567.57Eukaryotic initiation factor 4A-I OS=Pongo abelii ... [more]
IF4A1_PANTR1.692e-6567.57Eukaryotic initiation factor 4A-I OS=Pan troglodyt... [more]
IF4A1_MOUSE1.692e-6567.57Eukaryotic initiation factor 4A-I OS=Mus musculus ... [more]
IF4A1_MACFA1.692e-6567.57Eukaryotic initiation factor 4A-I OS=Macaca fascic... [more]
IF4A1_HUMAN1.692e-6567.57Eukaryotic initiation factor 4A-I OS=Homo sapiens ... [more]
IF4A1_BOVIN1.692e-6567.57Eukaryotic initiation factor 4A-I OS=Bos taurus GN... [more]
IF4A_NEOFI2.210e-6566.30ATP-dependent RNA helicase eIF4A OS=Neosartorya fi... [more]
IF4A_ASPFU2.210e-6566.30ATP-dependent RNA helicase eIF4A OS=Aspergillus fu... [more]
IF4A_ASPCL6.429e-6565.76ATP-dependent RNA helicase eIF4A OS=Aspergillus cl... [more]

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Properties
Property NameValue
Genbank descriptionC32003B03EF DevOvary1 Citrus clementina cDNA clone C32003B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876300 ID=FC876300; Name=FC876300; organism=Citrus clementina; type=EST; length=558bp
AGGATCAGTCTGGAACTGGGAATCCAGCAACTTTCTGCTCTGGAATTTTG
CAGCAACTTGATTATGGTCTTGTCCAATGTCAGGCCCTGGTATTGGCACC
CACTAGGGAACTAGCTCAACAGATTGAGAAAGTAATGAGGGCACTTGGTG
ATTATCTTGGTGTTAAGGTTCATGCTTGTGTCGGTGGGACAAGTGTTCGC
GAGGATCAGCGCATTCTTCAAGCTGGTGTTCATGTTGTTGTTGGCACTCC
TGGTCGTGTGTTTGACATGCTGCGCCGACAGTCTTTACGCCCTGATTACA
TTAAGATGTTTGTACTGGATGAGGCTGATGAAATGCTTTCCCGTGGCTTT
AAGGATCAGATCTATGATATTTTCCAGCTGCTTCCAGCTAAAGTTCAAGT
GGGGGTTTTCTCTGCTACAATGCCTCCTGAGGCCTTGGAGATTACAAGGA
AGTTTATGAACAAGCCTGCGAGAATCTTGGTTAAACTTGATGAACTCACC
CTTGAGGGTATCAAGCAATTTTATCTCACTGTTGAGAACGAAGAATGGAA
GCTTGAAA
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