FC876300

Overview
NameFC876300
Unique NameFC876300
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length558
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11722 contig Ccv1_Contig11722:378..935. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: IF4A2_MACFA (Eukaryotic initiation factor 4A-II OS=Macaca fascicularis GN=EIF4A2 PE=2 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 1.097e-64
Identity = 125/185 (67.57%), Postives = 146/185 (78.92%), Query Frame = 3
Query:    6 QSGTGNPATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGV-HVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTVENEEWKLE 557
            QSGTG  ATF   ILQQL+    + QALVLAPTRELAQQI+KV+ ALGDY+G   HAC+GGT+VR + + LQA   H+VVGTPGRVFDML R+ L P +IKMFVLDEAD MLSRGFKDQIY+IFQ L   +QV + SATMP + LE+T+KFM  P RILVK +ELTLEGIKQFY+ VE EEWKL+
Sbjct:   79 QSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADGMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLD 263          
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: IF4A_CRYNE (ATP-dependent RNA helicase eIF4A OS=Cryptococcus neoformans GN=TIF1 PE=3 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 2.443e-64
Identity = 123/184 (66.85%), Postives = 145/184 (78.80%), Query Frame = 3
Query:    6 QSGTGNPATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTVENEEWKLE 557
            QSGTG  ATF   ILQ++D  + + QALVLAPTRELAQQI+KV+ ALGDYL V  HACVGGT+VRED   L  G H+VVGTPGRVFDM+ R +L+ + + MF LDEADEMLS GFK+ IY+IFQLLP + QV + SATM PE L++T+KFM  P RILVK DELTLEGI+QFY+ VE EEWKLE
Sbjct:   73 QSGTGKTATFSVSILQRIDTTVKKTQALVLAPTRELAQQIQKVVIALGDYLNVDCHACVGGTAVREDIARLNEGPHIVVGTPGRVFDMINRGALKTEAVMMFCLDEADEMLSTGFKESIYEIFQLLPGETQVVLLSATMAPEVLDVTKKFMRDPIRILVKKDELTLEGIRQFYINVEKEEWKLE 256          
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: IF4A_USTMA (ATP-dependent RNA helicase eIF4A OS=Ustilago maydis GN=TIF1 PE=3 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 3.191e-64
Identity = 119/184 (64.67%), Postives = 144/184 (78.26%), Query Frame = 3
Query:    6 QSGTGNPATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTVENEEWKLE 557
            QSGTG  ATF   ILQ++D  +   QAL+LAPTRELAQQI+KV+ ALGDY+ +  HAC+GGT+VRED   L  G  VVVGTPGRV+DM+ R++ + D +KMF LDEADEMLSRGFKDQ+Y++FQLLP   Q  + SATMP E LE+T+KFM  P RILVK DELTLEGIKQFY+ VE E+WKL+
Sbjct:   83 QSGTGKTATFSIAILQRIDPSIKAVQALILAPTRELAQQIQKVVIALGDYMKIDCHACIGGTNVREDMAKLNEGAQVVVGTPGRVYDMINRRAFKTDQLKMFCLDEADEMLSRGFKDQMYEVFQLLPQDTQCVLLSATMPQEVLEVTKKFMRDPIRILVKRDELTLEGIKQFYVAVEKEDWKLD 266          
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: IF4A_AJECN (ATP-dependent RNA helicase eIF4A OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=TIF1 PE=3 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 3.191e-64
Identity = 120/184 (65.22%), Postives = 144/184 (78.26%), Query Frame = 3
Query:    6 QSGTGNPATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTVENEEWKLE 557
            QSGTG  ATF    LQ++D  L  CQAL+LAPTRELAQQI+KV+ A+GD++ ++ HAC+GG SVRED + LQ G  VVVGTPGRV DM++R+ L+ D++KMFVLDEADEMLS GF +QIYDIFQ LP   QV + SATMP + LE+T KFM  P RILVK  ELTLEGIKQFY+ VE EEWKL+
Sbjct:   70 QSGTGKTATFSISALQKVDTNLKACQALILAPTRELAQQIQKVVVAIGDFMSIECHACIGGISVREDMKALQDGPQVVVGTPGRVHDMIQRRVLKTDHMKMFVLDEADEMLSHGFTEQIYDIFQFLPQSTQVVLLSATMPQDVLEVTTKFMRDPVRILVKKAELTLEGIKQFYIAVEKEEWKLD 253          
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: IF4A_CAEEL (Eukaryotic initiation factor 4A OS=Caenorhabditis elegans GN=inf-1 PE=2 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 4.167e-64
Identity = 120/184 (65.22%), Postives = 146/184 (79.35%), Query Frame = 3
Query:    6 QSGTGNPATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTVENEEWKLE 557
            QSGTG  ATF   ILQ++D+     QALV+APTRELAQQI+KVM ALG+YL V +  C+GGTSVR+DQR L+AG+HVVVGTPGRV DM+ R +L    IKMFVLDEADEMLSRGFKDQIY++F+ +P  VQV + SATMP E L++T +FM  P RILVK DELTLEGI+QFY+ V+ +EWK +
Sbjct:   74 QSGTGKTATFSVSILQRIDHEDPHVQALVMAPTRELAQQIQKVMSALGEYLNVNILPCIGGTSVRDDQRKLEAGIHVVVGTPGRVGDMINRNALDTSRIKMFVLDEADEMLSRGFKDQIYEVFRSMPQDVQVVLLSATMPSEVLDVTNRFMRNPIRILVKKDELTLEGIRQFYINVQKDEWKFD 257          
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: IF4A_ASPOR (ATP-dependent RNA helicase eIF4A OS=Aspergillus oryzae GN=tif1 PE=3 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 4.167e-64
Identity = 119/184 (64.67%), Postives = 144/184 (78.26%), Query Frame = 3
Query:    6 QSGTGNPATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTVENEEWKLE 557
            QSGTG  ATF    LQ+LD  +  CQAL+LAPTRELAQQI+KV+ A+GD++ +  HAC+GGT+VRED + L  G  VVVGTPGRV DM++R+ L+ D++K F+LDEADEMLSRGF +QIYDIFQLLP   QV + SATMP + LE+T KFM  P RILVK  ELTLEGIKQFY+ VE EEWKL+
Sbjct:   93 QSGTGKTATFSISALQKLDPNVKGCQALILAPTRELAQQIQKVVVAIGDFMNITCHACIGGTAVREDMKALGEGPEVVVGTPGRVHDMIQRRVLKTDHLKQFILDEADEMLSRGFTEQIYDIFQLLPQSTQVVLLSATMPQDVLEVTTKFMRDPVRILVKKQELTLEGIKQFYIAVEKEEWKLD 276          
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: IF4A_ASPNC (ATP-dependent RNA helicase eIF4A OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=tif1 PE=3 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 4.167e-64
Identity = 117/184 (63.59%), Postives = 145/184 (78.80%), Query Frame = 3
Query:    6 QSGTGNPATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTVENEEWKLE 557
            QSGTG  ATF    LQ++D  L  CQAL++APTRELAQQI+KV+ A+GD++ ++ HAC+GGT+VR+D   L+AG  VVVGTPGR+ DM+ R+ L+ D +K+F+LDEADEMLSRGF +QIYDIFQLLP   QV + SATMP + LE+T KFM  P RILVK  ELTLEGIKQFY+ VE EEWKL+
Sbjct:   70 QSGTGKTATFSISALQKIDQELKACQALIVAPTRELAQQIQKVVVAIGDFMNIECHACIGGTNVRDDMNALRAGPQVVVGTPGRIHDMIERRVLKTDQMKLFILDEADEMLSRGFTEQIYDIFQLLPQSTQVTLLSATMPQDVLEVTTKFMRDPIRILVKKQELTLEGIKQFYIAVEKEEWKLD 253          
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: IF4A_CRYPV (Eukaryotic initiation factor 4A OS=Cryptosporidium parvum GN=EIF4-A PE=2 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 7.108e-64
Identity = 121/184 (65.76%), Postives = 146/184 (79.35%), Query Frame = 3
Query:    6 QSGTGNPATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTVENEEWKLE 557
            QSGTG  ATF    LQ++DY L  CQ L+LAPTRELAQQI+KV  ALGDY  ++ HACVGGTSVR+D   L++GVH+VVGTPGRVFDML +  LR D +K+F+LDEADEMLSRGFK QI+DIF+ LP  VQV +FSATMP E L +T +FM  P RILVK +ELTLEGI+QFY+ VE +EWK++
Sbjct:   76 QSGTGKTATFVIAALQKIDYSLNACQVLLLAPTRELAQQIQKVALALGDYCELRCHACVGGTSVRDDMNKLKSGVHMVVGTPGRVFDMLDKGYLRVDNLKLFILDEADEMLSRGFKVQIHDIFKKLPQDVQVALFSATMPNEILHLTTQFMRDPKRILVKQEELTLEGIRQFYVGVEKDEWKMD 259          
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: IF4A_EMENI (ATP-dependent RNA helicase eIF4A OS=Emericella nidulans GN=tif1 PE=3 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 9.283e-64
Identity = 116/184 (63.04%), Postives = 145/184 (78.80%), Query Frame = 3
Query:    6 QSGTGNPATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTVENEEWKLE 557
            QSGTG  ATF    LQ+LD  +  CQAL++APTRELAQQI+KV+ A+GD++ ++ HAC+GGT+VR+D   L+ G  +VVGTPGR+ DM++R+ L+ D +KMF+LDEADEMLSRGF +QIYDIFQLLP   QV + SATMP + LE+T KFM  P RILVK  ELTLEGIKQFY+ VE EEWKL+
Sbjct:   93 QSGTGKTATFSISALQKLDPNVKACQALIVAPTRELAQQIQKVVIAIGDFMNIQCHACIGGTAVRDDMNALREGPQIVVGTPGRIHDMIQRRVLKTDQMKMFILDEADEMLSRGFTEQIYDIFQLLPQSTQVVLLSATMPQDVLEVTTKFMRDPVRILVKKQELTLEGIKQFYIAVEKEEWKLD 276          
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: IF4A_COCIM (ATP-dependent RNA helicase eIF4A OS=Coccidioides immitis GN=TIF1 PE=3 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 1.212e-63
Identity = 120/184 (65.22%), Postives = 144/184 (78.26%), Query Frame = 3
Query:    6 QSGTGNPATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTVENEEWKLE 557
            QSGTG  ATF    LQ++D  L  CQAL+LAPTRELAQQI+KV+ A+GD++ V+ HAC+GGT+VRED + L  G  VVVGTPGRV DM++R+ L+ D +KMFVLDEADEMLSRGF +QIYDIFQ LP   QV + SATMP + L++T KFM  P RILVK  ELTLEGIKQFY+ VE EEWKL+
Sbjct:   70 QSGTGKTATFSISALQKVDTNLKACQALILAPTRELAQQIQKVVVAIGDFMSVECHACIGGTNVREDIKALNDGPQVVVGTPGRVHDMIQRRVLKTDQMKMFVLDEADEMLSRGFTEQIYDIFQFLPQSTQVVLLSATMPQDVLDVTTKFMRDPVRILVKKAELTLEGIKQFYIAVEKEEWKLD 253          
The following BLAST results are available for this feature:
BLAST of FC876300 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF4A2_MACFA1.097e-6467.57Eukaryotic initiation factor 4A-II OS=Macaca fasci... [more]
IF4A_CRYNE2.443e-6466.85ATP-dependent RNA helicase eIF4A OS=Cryptococcus n... [more]
IF4A_USTMA3.191e-6464.67ATP-dependent RNA helicase eIF4A OS=Ustilago maydi... [more]
IF4A_AJECN3.191e-6465.22ATP-dependent RNA helicase eIF4A OS=Ajellomyces ca... [more]
IF4A_CAEEL4.167e-6465.22Eukaryotic initiation factor 4A OS=Caenorhabditis ... [more]
IF4A_ASPOR4.167e-6464.67ATP-dependent RNA helicase eIF4A OS=Aspergillus or... [more]
IF4A_ASPNC4.167e-6463.59ATP-dependent RNA helicase eIF4A OS=Aspergillus ni... [more]
IF4A_CRYPV7.108e-6465.76Eukaryotic initiation factor 4A OS=Cryptosporidium... [more]
IF4A_EMENI9.283e-6463.04ATP-dependent RNA helicase eIF4A OS=Emericella nid... [more]
IF4A_COCIM1.212e-6365.22ATP-dependent RNA helicase eIF4A OS=Coccidioides i... [more]

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Properties
Property NameValue
Genbank descriptionC32003B03EF DevOvary1 Citrus clementina cDNA clone C32003B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876300 ID=FC876300; Name=FC876300; organism=Citrus clementina; type=EST; length=558bp
AGGATCAGTCTGGAACTGGGAATCCAGCAACTTTCTGCTCTGGAATTTTG
CAGCAACTTGATTATGGTCTTGTCCAATGTCAGGCCCTGGTATTGGCACC
CACTAGGGAACTAGCTCAACAGATTGAGAAAGTAATGAGGGCACTTGGTG
ATTATCTTGGTGTTAAGGTTCATGCTTGTGTCGGTGGGACAAGTGTTCGC
GAGGATCAGCGCATTCTTCAAGCTGGTGTTCATGTTGTTGTTGGCACTCC
TGGTCGTGTGTTTGACATGCTGCGCCGACAGTCTTTACGCCCTGATTACA
TTAAGATGTTTGTACTGGATGAGGCTGATGAAATGCTTTCCCGTGGCTTT
AAGGATCAGATCTATGATATTTTCCAGCTGCTTCCAGCTAAAGTTCAAGT
GGGGGTTTTCTCTGCTACAATGCCTCCTGAGGCCTTGGAGATTACAAGGA
AGTTTATGAACAAGCCTGCGAGAATCTTGGTTAAACTTGATGAACTCACC
CTTGAGGGTATCAAGCAATTTTATCTCACTGTTGAGAACGAAGAATGGAA
GCTTGAAA
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