FC876300

Overview
NameFC876300
Unique NameFC876300
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length558
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: RHLB_SALHS (ATP-dependent RNA helicase rhlB OS=Salmonella heidelberg (strain SL476) GN=rhlB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.314e-17
Identity = 60/189 (31.75%), Postives = 94/189 (49.74%), Query Frame = 3 
Query:    6 QSGTGNPATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQ--VGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTVENEE 545
            Q+GTG    F +     L       D  + Q +AL++APTRELA QI      L    G+K+    GG    +  ++L++GV +++GT GR+ D  ++  +    I++ VLDEAD M   GF   I  +F+ +P   Q    +FSAT+     E+  + MN    + V+ ++ T   IK+      NEE
Sbjct:   54 QTGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAAQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEE 242
[Close]
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: RHLB_SALG2 (ATP-dependent RNA helicase rhlB OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=rhlB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.314e-17
Identity = 60/189 (31.75%), Postives = 94/189 (49.74%), Query Frame = 3 
Query:    6 QSGTGNPATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQ--VGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTVENEE 545
            Q+GTG    F +     L       D  + Q +AL++APTRELA QI      L    G+K+    GG    +  ++L++GV +++GT GR+ D  ++  +    I++ VLDEAD M   GF   I  +F+ +P   Q    +FSAT+     E+  + MN    + V+ ++ T   IK+      NEE
Sbjct:   54 QTGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAAQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEE 242
[Close]
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: RHLB_SALEP (ATP-dependent RNA helicase rhlB OS=Salmonella enteritidis PT4 (strain P125109) GN=rhlB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.314e-17
Identity = 60/189 (31.75%), Postives = 94/189 (49.74%), Query Frame = 3 
Query:    6 QSGTGNPATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQ--VGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTVENEE 545
            Q+GTG    F +     L       D  + Q +AL++APTRELA QI      L    G+K+    GG    +  ++L++GV +++GT GR+ D  ++  +    I++ VLDEAD M   GF   I  +F+ +P   Q    +FSAT+     E+  + MN    + V+ ++ T   IK+      NEE
Sbjct:   54 QTGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAAQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEE 242
[Close]
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: RHLB_SALDC (ATP-dependent RNA helicase rhlB OS=Salmonella dublin (strain CT_02021853) GN=rhlB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.314e-17
Identity = 60/189 (31.75%), Postives = 94/189 (49.74%), Query Frame = 3 
Query:    6 QSGTGNPATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQ--VGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTVENEE 545
            Q+GTG    F +     L       D  + Q +AL++APTRELA QI      L    G+K+    GG    +  ++L++GV +++GT GR+ D  ++  +    I++ VLDEAD M   GF   I  +F+ +P   Q    +FSAT+     E+  + MN    + V+ ++ T   IK+      NEE
Sbjct:   54 QTGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAAQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEE 242
[Close]
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: RHLB_SALCH (ATP-dependent RNA helicase rhlB OS=Salmonella choleraesuis GN=rhlB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.314e-17
Identity = 60/189 (31.75%), Postives = 94/189 (49.74%), Query Frame = 3 
Query:    6 QSGTGNPATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQ--VGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTVENEE 545
            Q+GTG    F +     L       D  + Q +AL++APTRELA QI      L    G+K+    GG    +  ++L++GV +++GT GR+ D  ++  +    I++ VLDEAD M   GF   I  +F+ +P   Q    +FSAT+     E+  + MN    + V+ ++ T   IK+      NEE
Sbjct:   54 QTGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAAQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEE 242
[Close]
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: RHLB_SALA4 (ATP-dependent RNA helicase rhlB OS=Salmonella agona (strain SL483) GN=rhlB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.314e-17
Identity = 60/189 (31.75%), Postives = 94/189 (49.74%), Query Frame = 3 
Query:    6 QSGTGNPATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQ--VGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTVENEE 545
            Q+GTG    F +     L       D  + Q +AL++APTRELA QI      L    G+K+    GG    +  ++L++GV +++GT GR+ D  ++  +    I++ VLDEAD M   GF   I  +F+ +P   Q    +FSAT+     E+  + MN    + V+ ++ T   IK+      NEE
Sbjct:   54 QTGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAAQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEE 242
[Close]
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: RHLB_KLEP7 (ATP-dependent RNA helicase rhlB OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=rhlB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.314e-17
Identity = 60/189 (31.75%), Postives = 94/189 (49.74%), Query Frame = 3 
Query:    6 QSGTGNPATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQ--VGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTVENEE 545
            Q+GTG    F +     L       D  + Q +AL++APTRELA QI      L    G+K+    GG    +  ++L++GV +++GT GR+ D  ++  +    I++ VLDEAD M   GF   I  +F+ +P   Q    +FSAT+     E+  + MN    + V+ ++ T   IK+      NEE
Sbjct:   54 QTGTGKTMAFLTSTFHYLLSHPAIADRQVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPATQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEE 242
[Close]
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: RHLB_KLEP3 (ATP-dependent RNA helicase rhlB OS=Klebsiella pneumoniae (strain 342) GN=rhlB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.314e-17
Identity = 60/189 (31.75%), Postives = 94/189 (49.74%), Query Frame = 3 
Query:    6 QSGTGNPATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQ--VGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTVENEE 545
            Q+GTG    F +     L       D  + Q +AL++APTRELA QI      L    G+K+    GG    +  ++L++GV +++GT GR+ D  ++  +    I++ VLDEAD M   GF   I  +F+ +P   Q    +FSAT+     E+  + MN    + V+ ++ T   IK+      NEE
Sbjct:   54 QTGTGKTMAFLTSTFHYLLSHPAIADRQVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPATQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEE 242
[Close]
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: RHLB_ECOUT (ATP-dependent RNA helicase rhlB OS=Escherichia coli (strain UTI89 / UPEC) GN=rhlB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.314e-17
Identity = 61/189 (32.28%), Postives = 95/189 (50.26%), Query Frame = 3 
Query:    6 QSGTGNPATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQ--VGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTVENEE 545
            Q+GTG    F +     L       D  + Q +AL++APTRELA QI      L +  G+K+    GG    +  ++L++GV +++GT GR+ D  ++  +    I++ VLDEAD M   GF   I  +F+ +P   Q    +FSAT+     E+  + MN    I V+ ++ T   IK+      NEE
Sbjct:   54 QTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEE 242
[Close]
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: RHLB_ECOSE (ATP-dependent RNA helicase rhlB OS=Escherichia coli (strain SE11) GN=rhlB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.314e-17
Identity = 61/189 (32.28%), Postives = 95/189 (50.26%), Query Frame = 3 
Query:    6 QSGTGNPATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQ--VGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTVENEE 545
            Q+GTG    F +     L       D  + Q +AL++APTRELA QI      L +  G+K+    GG    +  ++L++GV +++GT GR+ D  ++  +    I++ VLDEAD M   GF   I  +F+ +P   Q    +FSAT+     E+  + MN    I V+ ++ T   IK+      NEE
Sbjct:   54 QTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEE 242
The following BLAST results are available for this feature:
BLAST of FC876300 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RHLB_SALHS1.314e-1731.75ATP-dependent RNA helicase rhlB OS=Salmonella heid... [more]
RHLB_SALG21.314e-1731.75ATP-dependent RNA helicase rhlB OS=Salmonella gall... [more]
RHLB_SALEP1.314e-1731.75ATP-dependent RNA helicase rhlB OS=Salmonella ente... [more]
RHLB_SALDC1.314e-1731.75ATP-dependent RNA helicase rhlB OS=Salmonella dubl... [more]
RHLB_SALCH1.314e-1731.75ATP-dependent RNA helicase rhlB OS=Salmonella chol... [more]
RHLB_SALA41.314e-1731.75ATP-dependent RNA helicase rhlB OS=Salmonella agon... [more]
RHLB_KLEP71.314e-1731.75ATP-dependent RNA helicase rhlB OS=Klebsiella pneu... [more]
RHLB_KLEP31.314e-1731.75ATP-dependent RNA helicase rhlB OS=Klebsiella pneu... [more]
RHLB_ECOUT1.314e-1732.28ATP-dependent RNA helicase rhlB OS=Escherichia col... [more]
RHLB_ECOSE1.314e-1732.28ATP-dependent RNA helicase rhlB OS=Escherichia col... [more]

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Properties
Property NameValue
Genbank descriptionC32003B03EF DevOvary1 Citrus clementina cDNA clone C32003B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876300 ID=FC876300; Name=FC876300; organism=Citrus clementina; type=EST; length=558bp
AGGATCAGTCTGGAACTGGGAATCCAGCAACTTTCTGCTCTGGAATTTTG
CAGCAACTTGATTATGGTCTTGTCCAATGTCAGGCCCTGGTATTGGCACC
CACTAGGGAACTAGCTCAACAGATTGAGAAAGTAATGAGGGCACTTGGTG
ATTATCTTGGTGTTAAGGTTCATGCTTGTGTCGGTGGGACAAGTGTTCGC
GAGGATCAGCGCATTCTTCAAGCTGGTGTTCATGTTGTTGTTGGCACTCC
TGGTCGTGTGTTTGACATGCTGCGCCGACAGTCTTTACGCCCTGATTACA
TTAAGATGTTTGTACTGGATGAGGCTGATGAAATGCTTTCCCGTGGCTTT
AAGGATCAGATCTATGATATTTTCCAGCTGCTTCCAGCTAAAGTTCAAGT
GGGGGTTTTCTCTGCTACAATGCCTCCTGAGGCCTTGGAGATTACAAGGA
AGTTTATGAACAAGCCTGCGAGAATCTTGGTTAAACTTGATGAACTCACC
CTTGAGGGTATCAAGCAATTTTATCTCACTGTTGAGAACGAAGAATGGAA
GCTTGAAA
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