FC876300

Overview
NameFC876300
Unique NameFC876300
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length558
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: RHLB_ECOLU (ATP-dependent RNA helicase rhlB OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=rhlB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.314e-17
Identity = 61/189 (32.28%), Postives = 95/189 (50.26%), Query Frame = 3 
Query:    6 QSGTGNPATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQ--VGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTVENEE 545
            Q+GTG    F +     L       D  + Q +AL++APTRELA QI      L +  G+K+    GG    +  ++L++GV +++GT GR+ D  ++  +    I++ VLDEAD M   GF   I  +F+ +P   Q    +FSAT+     E+  + MN    I V+ ++ T   IK+      NEE
Sbjct:   54 QTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEE 242
[Close]
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: RHLB_ECOLI (ATP-dependent RNA helicase rhlB OS=Escherichia coli (strain K12) GN=rhlB PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.314e-17
Identity = 61/189 (32.28%), Postives = 95/189 (50.26%), Query Frame = 3 
Query:    6 QSGTGNPATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQ--VGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTVENEE 545
            Q+GTG    F +     L       D  + Q +AL++APTRELA QI      L +  G+K+    GG    +  ++L++GV +++GT GR+ D  ++  +    I++ VLDEAD M   GF   I  +F+ +P   Q    +FSAT+     E+  + MN    I V+ ++ T   IK+      NEE
Sbjct:   54 QTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEE 242
[Close]
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: RHLB_ECOLC (ATP-dependent RNA helicase rhlB OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=rhlB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.314e-17
Identity = 61/189 (32.28%), Postives = 95/189 (50.26%), Query Frame = 3 
Query:    6 QSGTGNPATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQ--VGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTVENEE 545
            Q+GTG    F +     L       D  + Q +AL++APTRELA QI      L +  G+K+    GG    +  ++L++GV +++GT GR+ D  ++  +    I++ VLDEAD M   GF   I  +F+ +P   Q    +FSAT+     E+  + MN    I V+ ++ T   IK+      NEE
Sbjct:   54 QTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEE 242
[Close]
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: RHLB_ECOL6 (ATP-dependent RNA helicase rhlB OS=Escherichia coli O6 GN=rhlB PE=3 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.314e-17
Identity = 61/189 (32.28%), Postives = 95/189 (50.26%), Query Frame = 3 
Query:    6 QSGTGNPATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQ--VGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTVENEE 545
            Q+GTG    F +     L       D  + Q +AL++APTRELA QI      L +  G+K+    GG    +  ++L++GV +++GT GR+ D  ++  +    I++ VLDEAD M   GF   I  +F+ +P   Q    +FSAT+     E+  + MN    I V+ ++ T   IK+      NEE
Sbjct:   54 QTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEE 242
[Close]
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: RHLB_ECOL5 (ATP-dependent RNA helicase rhlB OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=rhlB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.314e-17
Identity = 61/189 (32.28%), Postives = 95/189 (50.26%), Query Frame = 3 
Query:    6 QSGTGNPATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQ--VGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTVENEE 545
            Q+GTG    F +     L       D  + Q +AL++APTRELA QI      L +  G+K+    GG    +  ++L++GV +++GT GR+ D  ++  +    I++ VLDEAD M   GF   I  +F+ +P   Q    +FSAT+     E+  + MN    I V+ ++ T   IK+      NEE
Sbjct:   54 QTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEE 242
[Close]
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: RHLB_ECOK1 (ATP-dependent RNA helicase rhlB OS=Escherichia coli O1:K1 / APEC GN=rhlB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.314e-17
Identity = 61/189 (32.28%), Postives = 95/189 (50.26%), Query Frame = 3 
Query:    6 QSGTGNPATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQ--VGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTVENEE 545
            Q+GTG    F +     L       D  + Q +AL++APTRELA QI      L +  G+K+    GG    +  ++L++GV +++GT GR+ D  ++  +    I++ VLDEAD M   GF   I  +F+ +P   Q    +FSAT+     E+  + MN    I V+ ++ T   IK+      NEE
Sbjct:   54 QTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEE 242
[Close]
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: RHLB_ECOHS (ATP-dependent RNA helicase rhlB OS=Escherichia coli O9:H4 (strain HS) GN=rhlB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.314e-17
Identity = 61/189 (32.28%), Postives = 95/189 (50.26%), Query Frame = 3 
Query:    6 QSGTGNPATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQ--VGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTVENEE 545
            Q+GTG    F +     L       D  + Q +AL++APTRELA QI      L +  G+K+    GG    +  ++L++GV +++GT GR+ D  ++  +    I++ VLDEAD M   GF   I  +F+ +P   Q    +FSAT+     E+  + MN    I V+ ++ T   IK+      NEE
Sbjct:   54 QTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEE 242
[Close]
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: RHLB_ECODH (ATP-dependent RNA helicase rhlB OS=Escherichia coli (strain K12 / DH10B) GN=rhlB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.314e-17
Identity = 61/189 (32.28%), Postives = 95/189 (50.26%), Query Frame = 3 
Query:    6 QSGTGNPATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQ--VGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTVENEE 545
            Q+GTG    F +     L       D  + Q +AL++APTRELA QI      L +  G+K+    GG    +  ++L++GV +++GT GR+ D  ++  +    I++ VLDEAD M   GF   I  +F+ +P   Q    +FSAT+     E+  + MN    I V+ ++ T   IK+      NEE
Sbjct:   54 QTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEE 242
[Close]
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: RHLB_ECOBW (ATP-dependent RNA helicase rhlB OS=Escherichia coli (strain K12 / BW2952) GN=rhlB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.314e-17
Identity = 61/189 (32.28%), Postives = 95/189 (50.26%), Query Frame = 3 
Query:    6 QSGTGNPATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQ--VGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTVENEE 545
            Q+GTG    F +     L       D  + Q +AL++APTRELA QI      L +  G+K+    GG    +  ++L++GV +++GT GR+ D  ++  +    I++ VLDEAD M   GF   I  +F+ +P   Q    +FSAT+     E+  + MN    I V+ ++ T   IK+      NEE
Sbjct:   54 QTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEE 242
[Close]
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: RHLB_ECO8A (ATP-dependent RNA helicase rhlB OS=Escherichia coli O8 (strain IAI1) GN=rhlB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.314e-17
Identity = 61/189 (32.28%), Postives = 95/189 (50.26%), Query Frame = 3 
Query:    6 QSGTGNPATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQ--VGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTVENEE 545
            Q+GTG    F +     L       D  + Q +AL++APTRELA QI      L +  G+K+    GG    +  ++L++GV +++GT GR+ D  ++  +    I++ VLDEAD M   GF   I  +F+ +P   Q    +FSAT+     E+  + MN    I V+ ++ T   IK+      NEE
Sbjct:   54 QTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEE 242
The following BLAST results are available for this feature:
BLAST of FC876300 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RHLB_ECOLU1.314e-1732.28ATP-dependent RNA helicase rhlB OS=Escherichia col... [more]
RHLB_ECOLI1.314e-1732.28ATP-dependent RNA helicase rhlB OS=Escherichia col... [more]
RHLB_ECOLC1.314e-1732.28ATP-dependent RNA helicase rhlB OS=Escherichia col... [more]
RHLB_ECOL61.314e-1732.28ATP-dependent RNA helicase rhlB OS=Escherichia col... [more]
RHLB_ECOL51.314e-1732.28ATP-dependent RNA helicase rhlB OS=Escherichia col... [more]
RHLB_ECOK11.314e-1732.28ATP-dependent RNA helicase rhlB OS=Escherichia col... [more]
RHLB_ECOHS1.314e-1732.28ATP-dependent RNA helicase rhlB OS=Escherichia col... [more]
RHLB_ECODH1.314e-1732.28ATP-dependent RNA helicase rhlB OS=Escherichia col... [more]
RHLB_ECOBW1.314e-1732.28ATP-dependent RNA helicase rhlB OS=Escherichia col... [more]
RHLB_ECO8A1.314e-1732.28ATP-dependent RNA helicase rhlB OS=Escherichia col... [more]

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Properties
Property NameValue
Genbank descriptionC32003B03EF DevOvary1 Citrus clementina cDNA clone C32003B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876300 ID=FC876300; Name=FC876300; organism=Citrus clementina; type=EST; length=558bp
AGGATCAGTCTGGAACTGGGAATCCAGCAACTTTCTGCTCTGGAATTTTG
CAGCAACTTGATTATGGTCTTGTCCAATGTCAGGCCCTGGTATTGGCACC
CACTAGGGAACTAGCTCAACAGATTGAGAAAGTAATGAGGGCACTTGGTG
ATTATCTTGGTGTTAAGGTTCATGCTTGTGTCGGTGGGACAAGTGTTCGC
GAGGATCAGCGCATTCTTCAAGCTGGTGTTCATGTTGTTGTTGGCACTCC
TGGTCGTGTGTTTGACATGCTGCGCCGACAGTCTTTACGCCCTGATTACA
TTAAGATGTTTGTACTGGATGAGGCTGATGAAATGCTTTCCCGTGGCTTT
AAGGATCAGATCTATGATATTTTCCAGCTGCTTCCAGCTAAAGTTCAAGT
GGGGGTTTTCTCTGCTACAATGCCTCCTGAGGCCTTGGAGATTACAAGGA
AGTTTATGAACAAGCCTGCGAGAATCTTGGTTAAACTTGATGAACTCACC
CTTGAGGGTATCAAGCAATTTTATCTCACTGTTGAGAACGAAGAATGGAA
GCTTGAAA
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