FC876300

Overview
NameFC876300
Unique NameFC876300
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length558
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11722 contig Ccv1_Contig11722:378..935. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: RHLB_ECO81 (ATP-dependent RNA helicase rhlB OS=Escherichia coli O81 (strain ED1a) GN=rhlB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.314e-17
Identity = 61/189 (32.28%), Postives = 95/189 (50.26%), Query Frame = 3
Query:    6 QSGTGNPATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQ--VGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTVENEE 545
            Q+GTG    F +     L       D  + Q +AL++APTRELA QI      L +  G+K+    GG    +  ++L++GV +++GT GR+ D  ++  +    I++ VLDEAD M   GF   I  +F+ +P   Q    +FSAT+     E+  + MN    I V+ ++ T   IK+      NEE
Sbjct:   54 QTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEE 242          
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: RHLB_ECO55 (ATP-dependent RNA helicase rhlB OS=Escherichia coli (strain 55989 / EAEC) GN=rhlB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.314e-17
Identity = 61/189 (32.28%), Postives = 95/189 (50.26%), Query Frame = 3
Query:    6 QSGTGNPATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQ--VGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTVENEE 545
            Q+GTG    F +     L       D  + Q +AL++APTRELA QI      L +  G+K+    GG    +  ++L++GV +++GT GR+ D  ++  +    I++ VLDEAD M   GF   I  +F+ +P   Q    +FSAT+     E+  + MN    I V+ ++ T   IK+      NEE
Sbjct:   54 QTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEE 242          
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: RHLB_ECO45 (ATP-dependent RNA helicase rhlB OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=rhlB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.314e-17
Identity = 61/189 (32.28%), Postives = 95/189 (50.26%), Query Frame = 3
Query:    6 QSGTGNPATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQ--VGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTVENEE 545
            Q+GTG    F +     L       D  + Q +AL++APTRELA QI      L +  G+K+    GG    +  ++L++GV +++GT GR+ D  ++  +    I++ VLDEAD M   GF   I  +F+ +P   Q    +FSAT+     E+  + MN    I V+ ++ T   IK+      NEE
Sbjct:   54 QTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEE 242          
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: RHLB_ECO27 (ATP-dependent RNA helicase rhlB OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=rhlB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.314e-17
Identity = 61/189 (32.28%), Postives = 95/189 (50.26%), Query Frame = 3
Query:    6 QSGTGNPATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQ--VGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTVENEE 545
            Q+GTG    F +     L       D  + Q +AL++APTRELA QI      L +  G+K+    GG    +  ++L++GV +++GT GR+ D  ++  +    I++ VLDEAD M   GF   I  +F+ +P   Q    +FSAT+     E+  + MN    I V+ ++ T   IK+      NEE
Sbjct:   54 QTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEE 242          
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: RHLB_ECO24 (ATP-dependent RNA helicase rhlB OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=rhlB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.314e-17
Identity = 61/189 (32.28%), Postives = 95/189 (50.26%), Query Frame = 3
Query:    6 QSGTGNPATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQ--VGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTVENEE 545
            Q+GTG    F +     L       D  + Q +AL++APTRELA QI      L +  G+K+    GG    +  ++L++GV +++GT GR+ D  ++  +    I++ VLDEAD M   GF   I  +F+ +P   Q    +FSAT+     E+  + MN    I V+ ++ T   IK+      NEE
Sbjct:   54 QTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEE 242          
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: RH36_ORYSJ (DEAD-box ATP-dependent RNA helicase 36 OS=Oryza sativa subsp. japonica GN=Os07g0633500 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.314e-17
Identity = 64/182 (35.16%), Postives = 89/182 (48.90%), Query Frame = 3
Query:    6 QSGTGNPATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMF------VLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTV 533
            ++G+G  A F   IL +L        AL LAPTRELA Q+ +  RALG  LG++  A +GG       + L    HVVV TPGR+  ++      PD  K+F      VLDEAD +L   F++ +  IF  LP K Q  +FSAT+      +     N            T++ +KQ Y+ V
Sbjct:  122 ETGSGKTAAFALPILHRLGEDPYGVAALALAPTRELAAQLAEQFRALGAPLGLRCLAAIGGFDSLGQAKGLARRPHVVVATPGRIATLINDD---PDLAKVFARTKFLVLDEADRVLDINFEEDLRVIFGSLPKKRQTFLFSATISDNLRSLLELSGNNSYFFEAYEGFKTVDTLKQLYIHV 300          
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: RH35_ARATH (DEAD-box ATP-dependent RNA helicase 35 OS=Arabidopsis thaliana GN=RH35 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.314e-17
Identity = 47/138 (34.06%), Postives = 77/138 (55.80%), Query Frame = 3
Query:   87 LVLAPTRELAQQIEKVMRAL------GDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPARILV 482
            L++ P+RELA+Q  +V+           Y  ++   C+GG  +R    +++ GVH+VV TPGR+ DML ++ +  D  +   LDEAD ++  GF+D I ++F    ++ Q  +FSATMP +     R  + KP  + V
Sbjct:  226 LIVCPSRELARQTYEVVEQFVAPLVEAGYPPLRSLLCIGGIDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMSLDACRYLTLDEADRLVDLGFEDDIREVFDHFKSQRQTLLFSATMPTKIQIFARSALVKPVTVNV 363          
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: RH20_ORYSJ (DEAD-box ATP-dependent RNA helicase 20 OS=Oryza sativa subsp. japonica GN=Os01g0197200 PE=3 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.314e-17
Identity = 52/137 (37.96%), Postives = 71/137 (51.82%), Query Frame = 3
Query:   87 LVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPARILVKLDEL 497
            LVLAPTRELA QI++     G    +K     GG       R LQ GV +V+ TPGR+ DM+         +   VLDEAD ML  GF+ QI  I   +    Q   +SAT P E  ++ R F+  P ++++  +EL
Sbjct:  168 LVLAPTRELAVQIQQEATKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMIESHHTNLRRVTYLVLDEADRMLDMGFEPQIKKIVSQIRPDRQTLYWSATWPKEVEQLARNFLFDPYKVIIGSEEL 304          
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: RH10_ORYSJ (DEAD-box ATP-dependent RNA helicase 10 OS=Oryza sativa subsp. japonica GN=Os03g0669000 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.314e-17
Identity = 61/180 (33.89%), Postives = 94/180 (52.22%), Query Frame = 3
Query:    6 QSGTGNPATFCSGILQQL-----DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLR-RQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQ-FY 524
            Q+G+G    F   I+Q L        L  C   VL+PTRELA QI +   ALG  +G+     VGG    +    L    H+VVGTPGR+ D L   +    + +K  VLDEAD++L+  F+  + DI  ++P + +  +FSATM  +  ++ R  +  P ++ V     T++ ++Q FY
Sbjct:   86 QTGSGKTGAFALPIIQALLKQDKPQALFAC---VLSPTRELAFQIGQQFEALGSAIGLSCTVLVGGVDRVQQAVSLAKRPHIVVGTPGRLLDHLTDTKGFSLNKLKYLVLDEADKLLNVEFQKALDDILNVIPKERRTFLFSATMTNKVSKLQRACLRNPVKVEVASKYSTVDTLRQEFY 262          
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: PRP28_LODEL (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Lodderomyces elongisporus GN=PRP28 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.314e-17
Identity = 57/168 (33.93%), Postives = 84/168 (50.00%), Query Frame = 3
Query:   84 ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRE-----DQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVG----------------VFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFY 524
            ALVLAPTRELA QI +     G  LG  V + +GG   +E     D  I+  GVH+VVGTPGR+ D + R+ L        V+DEAD M+  GF+  +  +  LLP   ++                 +++AT+ P   +IT+ ++  PA I +      L+ I Q +
Sbjct:  266 ALVLAPTRELALQITQEAEKFGKQLGFNVLSIIGGRQYQETMDQIDNMIVGRGVHIVVGTPGRLLDSVERKILNFSKCYYLVMDEADRMIDMGFEKDLNKLINLLPKNEKLSTTIDGKLFHLTKRLTMMYTATISPPIEKITKSYLIDPAYIYIGGAGEALDNIDQHF 433          
The following BLAST results are available for this feature:
BLAST of FC876300 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RHLB_ECO811.314e-1732.28ATP-dependent RNA helicase rhlB OS=Escherichia col... [more]
RHLB_ECO551.314e-1732.28ATP-dependent RNA helicase rhlB OS=Escherichia col... [more]
RHLB_ECO451.314e-1732.28ATP-dependent RNA helicase rhlB OS=Escherichia col... [more]
RHLB_ECO271.314e-1732.28ATP-dependent RNA helicase rhlB OS=Escherichia col... [more]
RHLB_ECO241.314e-1732.28ATP-dependent RNA helicase rhlB OS=Escherichia col... [more]
RH36_ORYSJ1.314e-1735.16DEAD-box ATP-dependent RNA helicase 36 OS=Oryza sa... [more]
RH35_ARATH1.314e-1734.06DEAD-box ATP-dependent RNA helicase 35 OS=Arabidop... [more]
RH20_ORYSJ1.314e-1737.96DEAD-box ATP-dependent RNA helicase 20 OS=Oryza sa... [more]
RH10_ORYSJ1.314e-1733.89DEAD-box ATP-dependent RNA helicase 10 OS=Oryza sa... [more]
PRP28_LODEL1.314e-1733.93Pre-mRNA-splicing ATP-dependent RNA helicase PRP28... [more]

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Properties
Property NameValue
Genbank descriptionC32003B03EF DevOvary1 Citrus clementina cDNA clone C32003B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876300 ID=FC876300; Name=FC876300; organism=Citrus clementina; type=EST; length=558bp
AGGATCAGTCTGGAACTGGGAATCCAGCAACTTTCTGCTCTGGAATTTTG
CAGCAACTTGATTATGGTCTTGTCCAATGTCAGGCCCTGGTATTGGCACC
CACTAGGGAACTAGCTCAACAGATTGAGAAAGTAATGAGGGCACTTGGTG
ATTATCTTGGTGTTAAGGTTCATGCTTGTGTCGGTGGGACAAGTGTTCGC
GAGGATCAGCGCATTCTTCAAGCTGGTGTTCATGTTGTTGTTGGCACTCC
TGGTCGTGTGTTTGACATGCTGCGCCGACAGTCTTTACGCCCTGATTACA
TTAAGATGTTTGTACTGGATGAGGCTGATGAAATGCTTTCCCGTGGCTTT
AAGGATCAGATCTATGATATTTTCCAGCTGCTTCCAGCTAAAGTTCAAGT
GGGGGTTTTCTCTGCTACAATGCCTCCTGAGGCCTTGGAGATTACAAGGA
AGTTTATGAACAAGCCTGCGAGAATCTTGGTTAAACTTGATGAACTCACC
CTTGAGGGTATCAAGCAATTTTATCTCACTGTTGAGAACGAAGAATGGAA
GCTTGAAA
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