FC876300
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: RHLB_ECO81 (ATP-dependent RNA helicase rhlB OS=Escherichia coli O81 (strain ED1a) GN=rhlB PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.314e-17 Identity = 61/189 (32.28%), Postives = 95/189 (50.26%), Query Frame = 3 Query: 6 QSGTGNPATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQ--VGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTVENEE 545 Q+GTG F + L D + Q +AL++APTRELA QI L + G+K+ GG + ++L++GV +++GT GR+ D ++ + I++ VLDEAD M GF I +F+ +P Q +FSAT+ E+ + MN I V+ ++ T IK+ NEE Sbjct: 54 QTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEE 242
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: RHLB_ECO55 (ATP-dependent RNA helicase rhlB OS=Escherichia coli (strain 55989 / EAEC) GN=rhlB PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.314e-17 Identity = 61/189 (32.28%), Postives = 95/189 (50.26%), Query Frame = 3 Query: 6 QSGTGNPATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQ--VGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTVENEE 545 Q+GTG F + L D + Q +AL++APTRELA QI L + G+K+ GG + ++L++GV +++GT GR+ D ++ + I++ VLDEAD M GF I +F+ +P Q +FSAT+ E+ + MN I V+ ++ T IK+ NEE Sbjct: 54 QTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEE 242
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: RHLB_ECO45 (ATP-dependent RNA helicase rhlB OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=rhlB PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.314e-17 Identity = 61/189 (32.28%), Postives = 95/189 (50.26%), Query Frame = 3 Query: 6 QSGTGNPATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQ--VGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTVENEE 545 Q+GTG F + L D + Q +AL++APTRELA QI L + G+K+ GG + ++L++GV +++GT GR+ D ++ + I++ VLDEAD M GF I +F+ +P Q +FSAT+ E+ + MN I V+ ++ T IK+ NEE Sbjct: 54 QTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEE 242
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: RHLB_ECO27 (ATP-dependent RNA helicase rhlB OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=rhlB PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.314e-17 Identity = 61/189 (32.28%), Postives = 95/189 (50.26%), Query Frame = 3 Query: 6 QSGTGNPATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQ--VGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTVENEE 545 Q+GTG F + L D + Q +AL++APTRELA QI L + G+K+ GG + ++L++GV +++GT GR+ D ++ + I++ VLDEAD M GF I +F+ +P Q +FSAT+ E+ + MN I V+ ++ T IK+ NEE Sbjct: 54 QTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEE 242
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: RHLB_ECO24 (ATP-dependent RNA helicase rhlB OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=rhlB PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.314e-17 Identity = 61/189 (32.28%), Postives = 95/189 (50.26%), Query Frame = 3 Query: 6 QSGTGNPATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQ--VGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTVENEE 545 Q+GTG F + L D + Q +AL++APTRELA QI L + G+K+ GG + ++L++GV +++GT GR+ D ++ + I++ VLDEAD M GF I +F+ +P Q +FSAT+ E+ + MN I V+ ++ T IK+ NEE Sbjct: 54 QTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEE 242
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: RH36_ORYSJ (DEAD-box ATP-dependent RNA helicase 36 OS=Oryza sativa subsp. japonica GN=Os07g0633500 PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.314e-17 Identity = 64/182 (35.16%), Postives = 89/182 (48.90%), Query Frame = 3 Query: 6 QSGTGNPATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMF------VLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTV 533 ++G+G A F IL +L AL LAPTRELA Q+ + RALG LG++ A +GG + L HVVV TPGR+ ++ PD K+F VLDEAD +L F++ + IF LP K Q +FSAT+ + N T++ +KQ Y+ V Sbjct: 122 ETGSGKTAAFALPILHRLGEDPYGVAALALAPTRELAAQLAEQFRALGAPLGLRCLAAIGGFDSLGQAKGLARRPHVVVATPGRIATLINDD---PDLAKVFARTKFLVLDEADRVLDINFEEDLRVIFGSLPKKRQTFLFSATISDNLRSLLELSGNNSYFFEAYEGFKTVDTLKQLYIHV 300
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: RH35_ARATH (DEAD-box ATP-dependent RNA helicase 35 OS=Arabidopsis thaliana GN=RH35 PE=2 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.314e-17 Identity = 47/138 (34.06%), Postives = 77/138 (55.80%), Query Frame = 3 Query: 87 LVLAPTRELAQQIEKVMRAL------GDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPARILV 482 L++ P+RELA+Q +V+ Y ++ C+GG +R +++ GVH+VV TPGR+ DML ++ + D + LDEAD ++ GF+D I ++F ++ Q +FSATMP + R + KP + V Sbjct: 226 LIVCPSRELARQTYEVVEQFVAPLVEAGYPPLRSLLCIGGIDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMSLDACRYLTLDEADRLVDLGFEDDIREVFDHFKSQRQTLLFSATMPTKIQIFARSALVKPVTVNV 363
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: RH20_ORYSJ (DEAD-box ATP-dependent RNA helicase 20 OS=Oryza sativa subsp. japonica GN=Os01g0197200 PE=3 SV=2) HSP 1 Score: 89.3521 bits (220), Expect = 1.314e-17 Identity = 52/137 (37.96%), Postives = 71/137 (51.82%), Query Frame = 3 Query: 87 LVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPARILVKLDEL 497 LVLAPTRELA QI++ G +K GG R LQ GV +V+ TPGR+ DM+ + VLDEAD ML GF+ QI I + Q +SAT P E ++ R F+ P ++++ +EL Sbjct: 168 LVLAPTRELAVQIQQEATKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMIESHHTNLRRVTYLVLDEADRMLDMGFEPQIKKIVSQIRPDRQTLYWSATWPKEVEQLARNFLFDPYKVIIGSEEL 304
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: RH10_ORYSJ (DEAD-box ATP-dependent RNA helicase 10 OS=Oryza sativa subsp. japonica GN=Os03g0669000 PE=2 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.314e-17 Identity = 61/180 (33.89%), Postives = 94/180 (52.22%), Query Frame = 3 Query: 6 QSGTGNPATFCSGILQQL-----DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLR-RQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQ-FY 524 Q+G+G F I+Q L L C VL+PTRELA QI + ALG +G+ VGG + L H+VVGTPGR+ D L + + +K VLDEAD++L+ F+ + DI ++P + + +FSATM + ++ R + P ++ V T++ ++Q FY Sbjct: 86 QTGSGKTGAFALPIIQALLKQDKPQALFAC---VLSPTRELAFQIGQQFEALGSAIGLSCTVLVGGVDRVQQAVSLAKRPHIVVGTPGRLLDHLTDTKGFSLNKLKYLVLDEADKLLNVEFQKALDDILNVIPKERRTFLFSATMTNKVSKLQRACLRNPVKVEVASKYSTVDTLRQEFY 262
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: PRP28_LODEL (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Lodderomyces elongisporus GN=PRP28 PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.314e-17 Identity = 57/168 (33.93%), Postives = 84/168 (50.00%), Query Frame = 3 Query: 84 ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRE-----DQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVG----------------VFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFY 524 ALVLAPTRELA QI + G LG V + +GG +E D I+ GVH+VVGTPGR+ D + R+ L V+DEAD M+ GF+ + + LLP ++ +++AT+ P +IT+ ++ PA I + L+ I Q + Sbjct: 266 ALVLAPTRELALQITQEAEKFGKQLGFNVLSIIGGRQYQETMDQIDNMIVGRGVHIVVGTPGRLLDSVERKILNFSKCYYLVMDEADRMIDMGFEKDLNKLINLLPKNEKLSTTIDGKLFHLTKRLTMMYTATISPPIEKITKSYLIDPAYIYIGGAGEALDNIDQHF 433 The following BLAST results are available for this feature:
BLAST of FC876300 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876300 ID=FC876300; Name=FC876300; organism=Citrus clementina; type=EST; length=558bpback to top |