FC876300

Overview
NameFC876300
Unique NameFC876300
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length558
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11722 contig Ccv1_Contig11722:378..935. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: IF4A_DEBHA (ATP-dependent RNA helicase eIF4A OS=Debaryomyces hansenii GN=TIF1 PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 3.417e-58
Identity = 111/184 (60.33%), Postives = 139/184 (75.54%), Query Frame = 3 
Query:    6 QSGTGNPATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTVENEEWKLE 557
            QSGTG  ATF    LQ++D      QAL+LAPTRELA QI+ V+  +G YL V VHA +GGTS+++D    ++GV +VVGTPGRVFDM+ R+  + D +KMF+LDEADEMLS GFK+QIY+IF+LLP   QV + SATMP + LE+T KFMN P RILVK DELTLEGIKQFY+ VE E++K +
Sbjct:   68 QSGTGKTATFTISALQRIDENEKSTQALILAPTRELALQIQNVITHIGLYLNVTVHASIGGTSMKDDIEAFKSGVQIVVGTPGRVFDMIERRFFKTDKVKMFILDEADEMLSSGFKEQIYNIFRLLPETTQVVLLSATMPQDVLEVTTKFMNNPVRILVKKDELTLEGIKQFYINVEQEDYKFD 251
[Close]
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: FAL1_COCIM (ATP-dependent RNA helicase FAL1 OS=Coccidioides immitis GN=FAL1 PE=3 SV=2)

HSP 1 Score: 224.172 bits (570), Expect = 3.417e-58
Identity = 110/184 (59.78%), Postives = 140/184 (76.09%), Query Frame = 3 
Query:    6 QSGTGNPATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTVENEEWKLE 557
            QSGTG  ATF   ILQ +D  L + QALVL+PTRELA QI+ V+ A+GDY+ V+ HAC+GGT+V +D R L  G HVV GTPGRV DM+RR+ LR  +IKM VLDEAD++L+RGF++QIYD+++ LP   QV V SAT+P + L +T KFM  P RILVK DELTLEG+KQ+++ VE EEWK +
Sbjct:   70 QSGTGKTATFAISILQVIDTALRETQALVLSPTRELATQIQNVIMAVGDYMNVQCHACIGGTNVGDDIRKLDHGQHVVSGTPGRVADMIRRRHLRTRHIKMLVLDEADDLLARGFREQIYDVYRYLPPATQVVVLSATLPYDVLSMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFD 253
[Close]
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: RH2_ORYSJ (DEAD-box ATP-dependent RNA helicase 2 OS=Oryza sativa subsp. japonica GN=Os01g0639100 PE=2 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 5.828e-58
Identity = 108/184 (58.70%), Postives = 141/184 (76.63%), Query Frame = 3 
Query:    6 QSGTGNPATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTVENEEWKLE 557
            QSGTG  +     + Q +D  + + QAL+L+PTRELA Q E+VM A+GD++ ++VHAC+GG S+ ED R L+ GVHVV GTPGRV DM++R++LR   IK+ +LDEADEML RGFKDQIYD+++ LP ++QV + SAT+P E LE+T KFM  P RILVK DELTLEGIKQF++ VE EEWK +
Sbjct:   76 QSGTGKTSMISLSVCQIVDTAVREVQALILSPTRELAAQTERVMLAIGDFINIQVHACIGGKSIGEDIRKLEHGVHVVSGTPGRVCDMIKRRTLRTRAIKLLILDEADEMLGRGFKDQIYDVYRYLPPELQVCLISATLPHEILEMTSKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFD 259
[Close]
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: FAL1_EMENI (ATP-dependent RNA helicase fal1 OS=Emericella nidulans GN=fal1 PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 5.828e-58
Identity = 110/184 (59.78%), Postives = 140/184 (76.09%), Query Frame = 3 
Query:    6 QSGTGNPATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTVENEEWKLE 557
            QSGTG  ATF    LQ +D  + + QALVL+PTRELA QI+ V+ ALGDY+ V+ HAC+GGT++ ED R L  G HVV GTPGRV DM+RR+ LR  +IKM VLDEADE+L+RGF++QIYD+++ LP   QV V SAT+P + L++T KFM  P R+LVK DELTLEGIKQ+++ VE EEWK +
Sbjct:   70 QSGTGKTATFSISALQVIDTVVRETQALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDYGQHVVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSATLPYDVLDMTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEKEEWKFD 253
[Close]
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: FAL1_SCHPO (ATP-dependent RNA helicase fal1 OS=Schizosaccharomyces pombe GN=tif412 PE=1 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 9.941e-58
Identity = 109/184 (59.24%), Postives = 139/184 (75.54%), Query Frame = 3 
Query:    6 QSGTGNPATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTVENEEWKLE 557
            QSGTG  ATF  GILQ +D  +   QAL+L+PTRELA QI+ V+ ALGD++ V+ HAC+GGTSV  D + L  G HVV GTPGRV DM+RR++LR   +KM +LDEADE+L++GFK+QIYDI++ LP   QV V SAT+P + LE+T KF   P RILVK DELTLEG+KQ+++ VE EEWK +
Sbjct:   66 QSGTGKTATFSIGILQSIDLSVRDTQALILSPTRELAVQIQNVVLALGDHMNVQCHACIGGTSVGNDIKKLDYGQHVVSGTPGRVTDMIRRRNLRTRNVKMLILDEADELLNQGFKEQIYDIYRYLPPGTQVVVVSATLPQDVLEMTNKFTTNPVRILVKRDELTLEGLKQYFIAVEKEEWKFD 249
[Close]
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: FAL1_GIBZE (ATP-dependent RNA helicase FAL1 OS=Gibberella zeae GN=FAL1 PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 9.941e-58
Identity = 108/184 (58.70%), Postives = 141/184 (76.63%), Query Frame = 3 
Query:    6 QSGTGNPATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTVENEEWKLE 557
            QSGTG  ATF   +LQ +D  + + QALVL+PTRELA QI+ V+ ALGDY+ V+ HAC+GGT+V ED R L  G H+V GTPGRV DM+RR+ LR  +IKM VLDEADE+L++GF++QIYD+++ LP   QV V SAT+P + L++T KFM  P RILVK DELTLEG+KQ+++ VE E+WK +
Sbjct:   72 QSGTGKTATFSISMLQVIDTAVRETQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDYGQHIVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNKGFREQIYDVYRYLPPATQVVVVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEDWKFD 255
[Close]
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: FAL1_NEUCR (ATP-dependent RNA helicase fal-1 OS=Neurospora crassa GN=fal-1 PE=3 SV=2)

HSP 1 Score: 222.246 bits (565), Expect = 1.298e-57
Identity = 108/184 (58.70%), Postives = 141/184 (76.63%), Query Frame = 3 
Query:    6 QSGTGNPATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTVENEEWKLE 557
            QSGTG  ATF   +LQ +D  + + QALVL+PTRELA QI+ V+ ALGDY+ V+ HAC+GGT+V ED R L  G H+V GTPGRV DM+RR+ LR  +IKM VLDEADE+L++GF++QIYD+++ LP   QV V SAT+P + L++T KFM  P RILVK DELTLEG+KQ+++ VE E+WK +
Sbjct:   71 QSGTGKTATFSISMLQVIDTAVRETQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDYGQHIVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNQGFREQIYDVYRYLPPATQVVVVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEDWKFD 254
[Close]
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: FAL1_CHAGB (ATP-dependent RNA helicase FAL1 OS=Chaetomium globosum GN=FAL1 PE=3 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 1.298e-57
Identity = 108/184 (58.70%), Postives = 141/184 (76.63%), Query Frame = 3 
Query:    6 QSGTGNPATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTVENEEWKLE 557
            QSGTG  ATF   +LQ +D  + + QALVL+PTRELA QI+ V+ ALGDY+ V+ HAC+GGT+V ED R L  G H+V GTPGRV DM+RR+ LR  +IKM VLDEADE+L++GF++QIYD+++ LP   QV V SAT+P + L++T KFM  P RILVK DELTLEG+KQ+++ VE E+WK +
Sbjct:   72 QSGTGKTATFSISMLQVIDTAVRETQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDYGQHIVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNQGFREQIYDVYRYLPPATQVVVVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEDWKFD 255
[Close]
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: FAL1_MAGGR (ATP-dependent RNA helicase FAL1 OS=Magnaporthe grisea GN=FAL1 PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 1.696e-57
Identity = 107/184 (58.15%), Postives = 141/184 (76.63%), Query Frame = 3 
Query:    6 QSGTGNPATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTVENEEWKLE 557
            QSGTG  ATF   +LQ +D  + + QALVL+PTRELA QI+ V+ ALGDY+ V+ HAC+GGT+V ED R L  G H+V GTPGRV DM+RR+ LR  +IKM VLDEADE+L++GF++QIYD+++ LP   QV V SAT+P + L++T KFM  P RILVK DELTLEG+KQ+++ +E E+WK +
Sbjct:   72 QSGTGKTATFSISMLQVIDTAVRETQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDYGQHIVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNQGFREQIYDVYRYLPPATQVVVVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAIEKEDWKFD 255
[Close]
BLAST of FC876300 vs. ExPASy Swiss-Prot
Match: IF4A_PICST (ATP-dependent RNA helicase eIF4A OS=Pichia stipitis GN=TIF1 PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 2.215e-57
Identity = 110/184 (59.78%), Postives = 140/184 (76.09%), Query Frame = 3 
Query:    6 QSGTGNPATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPARILVKLDELTLEGIKQFYLTVENEEWKLE 557
            QSGTG  ATF    LQ++D      QAL+LAPTRELA QI+ V+ ++G YL V VHA +GGTS+++D    ++GV VVVGTPGRVFDM+ R+  + + +KMF++DEADEMLS GFK+QIY+IF+LLP   QV + SATMP + LE+T KFMN P RILVK DELTLEGIKQFY+ VE E++K +
Sbjct:   68 QSGTGKTATFTISALQRIDENEKSTQALILAPTRELALQIKNVITSIGLYLNVTVHASIGGTSMQDDIEAFRSGVQVVVGTPGRVFDMIERRYFKTEKVKMFIMDEADEMLSSGFKEQIYNIFRLLPETTQVVLLSATMPQDVLEVTTKFMNNPVRILVKKDELTLEGIKQFYINVELEDYKFD 251
The following BLAST results are available for this feature:
BLAST of FC876300 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF4A_DEBHA3.417e-5860.33ATP-dependent RNA helicase eIF4A OS=Debaryomyces h... [more]
FAL1_COCIM3.417e-5859.78ATP-dependent RNA helicase FAL1 OS=Coccidioides im... [more]
RH2_ORYSJ5.828e-5858.70DEAD-box ATP-dependent RNA helicase 2 OS=Oryza sat... [more]
FAL1_EMENI5.828e-5859.78ATP-dependent RNA helicase fal1 OS=Emericella nidu... [more]
FAL1_SCHPO9.941e-5859.24ATP-dependent RNA helicase fal1 OS=Schizosaccharom... [more]
FAL1_GIBZE9.941e-5858.70ATP-dependent RNA helicase FAL1 OS=Gibberella zeae... [more]
FAL1_NEUCR1.298e-5758.70ATP-dependent RNA helicase fal-1 OS=Neurospora cra... [more]
FAL1_CHAGB1.298e-5758.70ATP-dependent RNA helicase FAL1 OS=Chaetomium glob... [more]
FAL1_MAGGR1.696e-5758.15ATP-dependent RNA helicase FAL1 OS=Magnaporthe gri... [more]
IF4A_PICST2.215e-5759.78ATP-dependent RNA helicase eIF4A OS=Pichia stipiti... [more]

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Properties
Property NameValue
Genbank descriptionC32003B03EF DevOvary1 Citrus clementina cDNA clone C32003B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876300 ID=FC876300; Name=FC876300; organism=Citrus clementina; type=EST; length=558bp
AGGATCAGTCTGGAACTGGGAATCCAGCAACTTTCTGCTCTGGAATTTTG
CAGCAACTTGATTATGGTCTTGTCCAATGTCAGGCCCTGGTATTGGCACC
CACTAGGGAACTAGCTCAACAGATTGAGAAAGTAATGAGGGCACTTGGTG
ATTATCTTGGTGTTAAGGTTCATGCTTGTGTCGGTGGGACAAGTGTTCGC
GAGGATCAGCGCATTCTTCAAGCTGGTGTTCATGTTGTTGTTGGCACTCC
TGGTCGTGTGTTTGACATGCTGCGCCGACAGTCTTTACGCCCTGATTACA
TTAAGATGTTTGTACTGGATGAGGCTGATGAAATGCTTTCCCGTGGCTTT
AAGGATCAGATCTATGATATTTTCCAGCTGCTTCCAGCTAAAGTTCAAGT
GGGGGTTTTCTCTGCTACAATGCCTCCTGAGGCCTTGGAGATTACAAGGA
AGTTTATGAACAAGCCTGCGAGAATCTTGGTTAAACTTGATGAACTCACC
CTTGAGGGTATCAAGCAATTTTATCTCACTGTTGAGAACGAAGAATGGAA
GCTTGAAA
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