FC876303

Overview
NameFC876303
Unique NameFC876303
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876303_ssr51 microsatellite FC876303_ssr51:51..64. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9362 contig Ccv1_Contig9362:3..699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876303 vs. ExPASy Swiss-Prot
Match: CAX3_ORYSJ (Vacuolar cation/proton exchanger 3 OS=Oryza sativa subsp. japonica GN=CAX3 PE=2 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 8.853e-21
Identity = 59/134 (44.03%), Postives = 77/134 (57.46%), Query Frame = 3
Query:  294 LANIQEVILGTKLSVLFPAIPLAIIGQCFGFAEPWVFALSLLGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRKETKYDRKXA 695
            L +I+ VI  +KL++L P  P +II          VF  S+LG+TPLAER+ + TEQ+A YTGPTVGGLLNAT GNATE+IIAI+AL    I VV+                   F GGI +  K+  + +  A
Sbjct:   41 LRSIRIVIFTSKLNLLLPFGPASIILHYTTSRHGLVFLFSMLGITPLAERLGYATEQLAIYTGPTVGGLLNATFGNATEMIIAIYALKNGMIRVVQQSLLGSILSNMLLVMGCAFFAGGIVHRNKDQVFSKATA 174          
BLAST of FC876303 vs. ExPASy Swiss-Prot
Match: VCX1_SCHPO (Vacuolar calcium ion transporter OS=Schizosaccharomyces pombe GN=vcx1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.811e-12
Identity = 33/92 (35.87%), Postives = 59/92 (64.13%), Query Frame = 3
Query:  306 QEVILGTKLSVLFPAIPLAIIGQCFGFAEPWVFALSLLGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVK 581
            + V++ +  +++   +P+ +I   F +    VF L++L + PLA  +SF TEQ++  +GPT+G LLNA+ GNA ELI+ + AL   ++ +V+
Sbjct:   54 KSVLMSSYFNLMLVFVPIGLIAGWFEWNAKSVFILNMLAIIPLASLLSFATEQLSIISGPTLGALLNASFGNAIELIVGVLALKRGELRIVQ 145          
BLAST of FC876303 vs. ExPASy Swiss-Prot
Match: CAX4_ORYSJ (Putative vacuolar cation/proton exchanger 4 OS=Oryza sativa subsp. japonica GN=Os02g0138900 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.728e-11
Identity = 47/115 (40.87%), Postives = 59/115 (51.30%), Query Frame = 3
Query:  312 VILGTKLSVLFPAIPLAIIGQCFGFAEPWVFALSLLGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIA 656
            V L +KL+VL P   LAI          WVF LS+LG+ PLAER+ F T+   +     VG LLN+  GNATELII+I AL   K+ VV+                   F GG+A
Sbjct:   67 VFLKSKLNVLIPCGFLAIFLNYMTQRYGWVFPLSMLGIIPLAERLGFATD---WQISCEVGRLLNSAFGNATELIISIHALSRGKLHVVQQCLLGSILSNLLLVLGSAFFSGGLA 178          
The following BLAST results are available for this feature:
BLAST of FC876303 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
CAX3_ORYSJ8.853e-2144.03Vacuolar cation/proton exchanger 3 OS=Oryza sativa... [more]
VCX1_SCHPO9.811e-1235.87Vacuolar calcium ion transporter OS=Schizosaccharo... [more]
CAX4_ORYSJ3.728e-1140.87Putative vacuolar cation/proton exchanger 4 OS=Ory... [more]

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Properties
Property NameValue
Genbank descriptionC32003B06EF DevOvary1 Citrus clementina cDNA clone C32003B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876303 ID=FC876303; Name=FC876303; organism=Citrus clementina; type=EST; length=697bp
ACTCCAGACTGAAACAAAATTTTCTCTCTCAATCAATCTTTAATCAAAAA
ATATATATATATATTTTTTATTATTAATTGTTTCTATCCTTCGTGTTTTT
TTTTTCTTTCAATTGCATTTGTGAAAAAATGGCTTCGACTGAACCATGGC
TGATGGAGAATGGCAGCGTGAAGGTTTTGAGCAAGGAGATCAGACATGGA
AGAACTGCACACAACATGTCATCCTCCTCGTTGAGGAAAAAATCCGATCT
TACCCTTGTCTCGAAAATTCGATTCCCTTGTCTTAGACGGTGTCTGGCTA
ATATCCAGGAGGTCATTTTGGGGACTAAACTTTCAGTTCTCTTTCCCGCC
ATTCCTTTAGCCATAATCGGCCAGTGTTTTGGATTTGCAGAACCATGGGT
ATTCGCTCTGAGCTTACTAGGACTGACTCCTCTGGCTGAACGTGTCAGCT
TCTTGACAGAGCAAATTGCTTTCTACACTGGCCCAACAGTGGGGGGATTA
TTGAACGCGACATGCGGCAATGCCACGGAGCTCATCATAGCAATTTTTGC
CCTATACGAACGTAAAATTGACGTGGTCAAATATTCTCTTTTGGGTTCCA
TTCTCTCAAACCTTCTTCTGGTTCTTGGCACTTCGCTCTTCTGTGGAGGG
ATTGCCAATCTCAGAAAGGAAACAAAATACGATAGAAAACNAGCCGA
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