FC876305

Overview
NameFC876305
Unique NameFC876305
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length487
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10260 contig Ccv1_Contig10260:10..496. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC876305 vs. ExPASy Swiss-Prot
Match: THS2_ARAHY (Putative stilbene synthase 2 (Fragment) OS=Arachis hypogaea PE=5 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.052e-24
Identity = 51/68 (75.00%), Postives = 58/68 (85.29%), Query Frame = 1 
Query:  277 LKENPNMCAYMAPSLDARQDIVVVEVPKFGKEVATKVIKEWGQPKSKITHLIFCITSGVDMPGAYYQL 480
            LKENPNMCAY APSLDAR+D+++ EVP+ GKE ATK IKEWGQP SKITHLIFC TSGV +PG  Y+L
Sbjct:    1 LKENPNMCAYKAPSLDAREDMMIREVPRVGKEAATKAIKEWGQPMSKITHLIFCTTSGVALPGVDYEL 68
[Close]
BLAST of FC876305 vs. ExPASy Swiss-Prot
Match: CHS6_MEDSA (Chalcone synthase 6-4 (Fragment) OS=Medicago sativa GN=CHS6-4 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.198e-14
Identity = 36/41 (87.80%), Postives = 36/41 (87.80%), Query Frame = 1 
Query:  364 GKEVATKVIKEWGQPKSKITHLIFCITSGVDMPGAYYQLTK 486
            GKE A K IKEWGQPKSKITHLIFC TSGVDMPGA YQLTK
Sbjct:    2 GKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTK 42
The following BLAST results are available for this feature:
BLAST of FC876305 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
THS2_ARAHY1.052e-2475.00Putative stilbene synthase 2 (Fragment) OS=Arachis... [more]
CHS6_MEDSA2.198e-1487.80Chalcone synthase 6-4 (Fragment) OS=Medicago sativ... [more]

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Properties
Property NameValue
Genbank descriptionC32003B08EF DevOvary1 Citrus clementina cDNA clone C32003B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876305 ID=FC876305; Name=FC876305; organism=Citrus clementina; type=EST; length=487bp
CTCACCAAGCACGAGCCACCCACATATTCATTAAGGGTTCAACTTGAAAT
GGCAACCGTTCAAGAGATCAGAAACGCTCAGCGTGCCGACGGTCCGGCCA
CCGTCCTCGCCATCGGTACGGCCACGCCTGCCCACAGTGTCAACCAGGCT
GATTATCCCGACTATTACTTCAGGATCACAAAGAGCGAGCATATGACGGA
GCTTAAAGAGAAGTTCAAGCGCATGTGTGACAAGTCGATGATTAAGAAGC
GTTACATGTACTTAACGGAAGAGATTTTGAAGGAAAACCCCAACATGTGC
GCTTACATGGCTCCATCACTCGACGCACGTCAAGACATTGTGGTGGTCGA
AGTGCCGAAGTTCGGGAAAGAAGTTGCTACAAAGGTCATCAAAGAATGGG
GCCAGCCCAAGTCTAAGATCACCCACCTCATCTTCTGCATCACCTCCGGC
GTCGACATGCCCGGCGCCTACTACCAGCTCACCAAAC
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