FC876306

Overview
NameFC876306
Unique NameFC876306
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length456
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876306 vs. ExPASy Swiss-Prot
Match: CHS2_IPOBA (Chalcone synthase LF2 OS=Ipomoea batatas GN=CHS-LF2 PE=2 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 3.002e-65
Identity = 117/141 (82.98%), Postives = 127/141 (90.07%), Query Frame = 2
Query:   23 QESRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVAEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLT 445
            +E R AQRA+GPAT+LAIGT TPA+ VNQ+ YPDYYFRIT SEH TELKEKF+RMCDKSMI KRYM+LTEEILKENP+ C YMAPSLDARQDI V EVPKLGKEAA  AIKEWGQPKSKITH++FCTTSGVDMPGADYQLT
Sbjct:    5 EEVRKAQRAEGPATILAIGTVTPANCVNQSTYPDYYFRITNSEHKTELKEKFQRMCDKSMITKRYMHLTEEILKENPSFCEYMAPSLDARQDIAVVEVPKLGKEAAQSAIKEWGQPKSKITHVVFCTTSGVDMPGADYQLT 145          
BLAST of FC876306 vs. ExPASy Swiss-Prot
Match: CHS1_CITSI (Chalcone synthase 1 OS=Citrus sinensis GN=CHS1 PE=2 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 3.002e-65
Identity = 118/140 (84.29%), Postives = 130/140 (92.86%), Query Frame = 2
Query:   26 ESRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVAEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLT 445
            E R AQRA GPAT++AIGTATP + V+Q+ YPDYYFRIT SEHMT+LKEKFKRMCDKSMIKKRYMYLTEEILKENPN+CAYMAPSLD RQD+VV EVP+LGK AAT+AIKEWGQPKSKITHL+FCTTSGVDMPGADY+LT
Sbjct:    6 EVRKAQRAQGPATIMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYMYLTEEILKENPNVCAYMAPSLDTRQDMVVVEVPRLGK-AATEAIKEWGQPKSKITHLVFCTTSGVDMPGADYRLT 144          
BLAST of FC876306 vs. ExPASy Swiss-Prot
Match: CHS8_IPOBA (Chalcone synthase DIV OS=Ipomoea batatas GN=CHS-DIV PE=2 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 3.921e-65
Identity = 116/141 (82.27%), Postives = 127/141 (90.07%), Query Frame = 2
Query:   23 QESRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVAEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLT 445
            +E R AQRA+GPAT+LAIGT TPA+ VNQ+ YPDYYFRIT SEH TELKEKF+RMCDKSMI KRYM+LTEEILKENP+ C YMAPSLDARQDI V EVPKLGKEAA  AIKEWGQPKSKITH++FCTTSG+DMPGADYQLT
Sbjct:    5 EEVRKAQRAEGPATILAIGTVTPANCVNQSTYPDYYFRITNSEHKTELKEKFQRMCDKSMITKRYMHLTEEILKENPSFCEYMAPSLDARQDIAVVEVPKLGKEAAQSAIKEWGQPKSKITHVVFCTTSGIDMPGADYQLT 145          
BLAST of FC876306 vs. ExPASy Swiss-Prot
Match: CHS3_TRISU (Chalcone synthase 3 OS=Trifolium subterraneum GN=CHS3 PE=2 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 3.921e-65
Identity = 117/140 (83.57%), Postives = 127/140 (90.71%), Query Frame = 2
Query:   26 ESRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVAEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLT 445
            E R AQRA+GPAT+LAIGTA PA+ V QA YPD+YF+IT SEH  ELKEKF+RMCDKSMIK RYMYLTEEILKENP++C YMAPSLDARQD+VV EVP+LGKEAA KAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLT
Sbjct:    6 EIRQAQRAEGPATILAIGTANPANKVEQATYPDFYFKITNSEHKVELKEKFQRMCDKSMIKSRYMYLTEEILKENPSLCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLT 145          
BLAST of FC876306 vs. ExPASy Swiss-Prot
Match: CHS2_MEDSA (Chalcone synthase 2 OS=Medicago sativa GN=CHS2 PE=1 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 3.921e-65
Identity = 117/140 (83.57%), Postives = 128/140 (91.43%), Query Frame = 2
Query:   26 ESRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVAEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLT 445
            E R AQRA+GPAT+LAIGTA PA+ V Q+ YPD+YF+IT SEH TELKEKF+RMCDKSMIK+RYMYLTEEILKENPN+C YMAPSLDARQD+VV EVP+LGKEAA KAIKEWGQPKSKITHLI CTTSGVDMPGADYQLT
Sbjct:    6 EIRKAQRAEGPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRMCDKSMIKRRYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIVCTTSGVDMPGADYQLT 145          
BLAST of FC876306 vs. ExPASy Swiss-Prot
Match: CHS1_IPOBA (Chalcone synthase LF1 OS=Ipomoea batatas GN=CHS-LF1 PE=2 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 3.921e-65
Identity = 116/141 (82.27%), Postives = 127/141 (90.07%), Query Frame = 2
Query:   23 QESRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVAEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLT 445
            +E R AQRA+GPAT+LAIGT TPA+ VNQ+ YPDYYFRIT SEH TELKEKF+RMCDKSMI KRYM+LTEEILKENP+ C YMAPSLDARQDI V EVPKLGKEAA  AIKEWGQPKSKITH++FCTTSG+DMPGADYQLT
Sbjct:    5 EEVRKAQRAEGPATILAIGTVTPANCVNQSTYPDYYFRITNSEHKTELKEKFQRMCDKSMITKRYMHLTEEILKENPSFCEYMAPSLDARQDIAVVEVPKLGKEAAQSAIKEWGQPKSKITHVVFCTTSGIDMPGADYQLT 145          
BLAST of FC876306 vs. ExPASy Swiss-Prot
Match: CHS5_TRISU (Chalcone synthase 5 OS=Trifolium subterraneum GN=CHS5 PE=2 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 5.121e-65
Identity = 117/140 (83.57%), Postives = 127/140 (90.71%), Query Frame = 2
Query:   26 ESRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVAEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLT 445
            E R AQRA+GPAT+LAIGTA PA+ V QA YPD+YF+IT SEH  ELKEKF+RMCDKSMIK RYMYLTEEILKENP++C YMAPSLDARQD+VV EVP+LGKEAA KAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLT
Sbjct:    6 EIRQAQRAEGPATILAIGTANPANKVEQATYPDFYFKITNSEHKVELKEKFQRMCDKSMIKSRYMYLTEEILKENPSVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLT 145          
BLAST of FC876306 vs. ExPASy Swiss-Prot
Match: CHS4_TRISU (Chalcone synthase 4 (Fragment) OS=Trifolium subterraneum GN=CHS4 PE=2 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 5.121e-65
Identity = 117/140 (83.57%), Postives = 127/140 (90.71%), Query Frame = 2
Query:   26 ESRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVAEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLT 445
            E R AQRA+GPAT+LAIGTA PA+ V QA YPD+YF+IT SEH  ELKEKF+RMCDKSMIK RYMYLTEEILKENP++C YMAPSLDARQD+VV EVP+LGKEAA KAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLT
Sbjct:    6 EIRKAQRAEGPATILAIGTANPANKVEQATYPDFYFKITNSEHKVELKEKFQRMCDKSMIKSRYMYLTEEILKENPSVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLT 145          
BLAST of FC876306 vs. ExPASy Swiss-Prot
Match: CHSY_ARATH (Chalcone synthase OS=Arabidopsis thaliana GN=CHS PE=1 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 6.688e-65
Identity = 117/140 (83.57%), Postives = 127/140 (90.71%), Query Frame = 2
Query:   26 ESRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVAEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLT 445
            E R AQRADGPA +LAIGTA P + V QA+YPDYYFRIT SEHMT+LKEKFKRMCDKS I+KR+M+LTEE LKENP+MCAYMAPSLD RQDIVV EVPKLGKEAA KAIKEWGQPKSKITH++FCTTSGVDMPGADYQLT
Sbjct:   11 EIRQAQRADGPAGILAIGTANPENHVLQAEYPDYYFRITNSEHMTDLKEKFKRMCDKSTIRKRHMHLTEEFLKENPHMCAYMAPSLDTRQDIVVVEVPKLGKEAAVKAIKEWGQPKSKITHVVFCTTSGVDMPGADYQLT 150          
BLAST of FC876306 vs. ExPASy Swiss-Prot
Match: CHSY_ARAAL (Chalcone synthase OS=Arabis alpina GN=CHS PE=3 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 6.688e-65
Identity = 116/141 (82.27%), Postives = 127/141 (90.07%), Query Frame = 2
Query:   23 QESRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVAEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLT 445
            +E R AQRADGPA +L IGTA P + V QA+YPDYYFRIT S+HMT+LKEKFKRMCDKSMI+KR+M+LTEE LKENP MCAYMAPSLD RQDIVV EVPKLGKEAA KAIKEWGQPKSKITH++FCTTSGVDMPGADYQLT
Sbjct:    6 EEIRKAQRADGPAGILGIGTANPPNHVLQAEYPDYYFRITNSDHMTDLKEKFKRMCDKSMIRKRHMHLTEEFLKENPKMCAYMAPSLDTRQDIVVVEVPKLGKEAAVKAIKEWGQPKSKITHVVFCTTSGVDMPGADYQLT 146          
The following BLAST results are available for this feature:
BLAST of FC876306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
CHS2_IPOBA3.002e-6582.98Chalcone synthase LF2 OS=Ipomoea batatas GN=CHS-LF... [more]
CHS1_CITSI3.002e-6584.29Chalcone synthase 1 OS=Citrus sinensis GN=CHS1 PE=... [more]
CHS8_IPOBA3.921e-6582.27Chalcone synthase DIV OS=Ipomoea batatas GN=CHS-DI... [more]
CHS3_TRISU3.921e-6583.57Chalcone synthase 3 OS=Trifolium subterraneum GN=C... [more]
CHS2_MEDSA3.921e-6583.57Chalcone synthase 2 OS=Medicago sativa GN=CHS2 PE=... [more]
CHS1_IPOBA3.921e-6582.27Chalcone synthase LF1 OS=Ipomoea batatas GN=CHS-LF... [more]
CHS5_TRISU5.121e-6583.57Chalcone synthase 5 OS=Trifolium subterraneum GN=C... [more]
CHS4_TRISU5.121e-6583.57Chalcone synthase 4 (Fragment) OS=Trifolium subter... [more]
CHSY_ARATH6.688e-6583.57Chalcone synthase OS=Arabidopsis thaliana GN=CHS P... [more]
CHSY_ARAAL6.688e-6582.27Chalcone synthase OS=Arabis alpina GN=CHS PE=3 SV=... [more]

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Properties
Property NameValue
Genbank descriptionC32003B09EF DevOvary1 Citrus clementina cDNA clone C32003B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876306 ID=FC876306; Name=FC876306; organism=Citrus clementina; type=EST; length=456bp
TCTTGTACAAAGGTGGCCGTATCAAGAAAGCAGAAACGCTCAGCGTGCCG
ACGGACCGGCCACCGTCCTCGCCATCGGTACGGCCACGCCTGCCCACAGT
GTCAACCAGGCTGATTATCCCGACTATTACTTCAGGATCACAAAGAGCGA
GCATATGACGGAGCTTAAAGAGAAGTTCAAGCGCATGTGTGACAAGTCGA
TGATTAAGAAGCGTTACATGTACTTAACGGAAGAGATTTTGAAGGAAAAC
CCCAACATGTGCGCTTACATGGCTCCATCACTCGACGCACGTCAAGACAT
TGTGGTGGCCGAAGTGCCGAAGCTCGGGAAAGAAGCTGCTACCAAGGCCA
TCAAAGAATGGGGCCAGCCCAAGTCTAAGATCACCCACCTCATCTTCTGC
ACCACCTCCGGCGTCGACATGCCCGGCGCCGACTACCAGCTCACCAACTG
ATCGGC
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