FC876308

Overview
NameFC876308
Unique NameFC876308
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length509
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9532 contig Ccv1_Contig9532:71..579. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC876308 vs. ExPASy Swiss-Prot
Match: UBIQ_RABIT (Ubiquitin OS=Oryctolagus cuniculus PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 9.499e-35
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 2 
Query:  239 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 466
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 143.28 bits (360), Expect = 6.157e-34
Identity = 72/76 (94.74%), Postives = 74/76 (97.37%), Query Frame = 2 
Query:   11 MQIFVKTLTGKTITLEVESSHTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 238
            MQIFVKTLTGKTITLEVE S TI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC876308 vs. ExPASy Swiss-Prot
Match: UBIQ_PONPY (Ubiquitin OS=Pongo pygmaeus GN=UBA52 PE=3 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 9.499e-35
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 2 
Query:  239 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 466
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 143.28 bits (360), Expect = 6.157e-34
Identity = 72/76 (94.74%), Postives = 74/76 (97.37%), Query Frame = 2 
Query:   11 MQIFVKTLTGKTITLEVESSHTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 238
            MQIFVKTLTGKTITLEVE S TI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC876308 vs. ExPASy Swiss-Prot
Match: UBIQ_PLUXY (Ubiquitin OS=Plutella xylostella PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 9.499e-35
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 2 
Query:  239 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 466
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 143.28 bits (360), Expect = 6.157e-34
Identity = 72/76 (94.74%), Postives = 74/76 (97.37%), Query Frame = 2 
Query:   11 MQIFVKTLTGKTITLEVESSHTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 238
            MQIFVKTLTGKTITLEVE S TI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC876308 vs. ExPASy Swiss-Prot
Match: UBIQ_PIG (Ubiquitin OS=Sus scrofa GN=UBA52 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 9.499e-35
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 2 
Query:  239 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 466
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 143.28 bits (360), Expect = 6.157e-34
Identity = 72/76 (94.74%), Postives = 74/76 (97.37%), Query Frame = 2 
Query:   11 MQIFVKTLTGKTITLEVESSHTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 238
            MQIFVKTLTGKTITLEVE S TI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC876308 vs. ExPASy Swiss-Prot
Match: UBIQ_PANTR (Ubiquitin OS=Pan troglodytes GN=UBB PE=1 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 9.499e-35
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 2 
Query:  239 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 466
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 143.28 bits (360), Expect = 6.157e-34
Identity = 72/76 (94.74%), Postives = 74/76 (97.37%), Query Frame = 2 
Query:   11 MQIFVKTLTGKTITLEVESSHTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 238
            MQIFVKTLTGKTITLEVE S TI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC876308 vs. ExPASy Swiss-Prot
Match: UBIQ_OPHHA (Ubiquitin OS=Ophiophagus hannah PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 9.499e-35
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 2 
Query:  239 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 466
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 143.28 bits (360), Expect = 6.157e-34
Identity = 72/76 (94.74%), Postives = 74/76 (97.37%), Query Frame = 2 
Query:   11 MQIFVKTLTGKTITLEVESSHTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 238
            MQIFVKTLTGKTITLEVE S TI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC876308 vs. ExPASy Swiss-Prot
Match: UBIQ_MOUSE (Ubiquitin OS=Mus musculus GN=Rps27a PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 9.499e-35
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 2 
Query:  239 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 466
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 143.28 bits (360), Expect = 6.157e-34
Identity = 72/76 (94.74%), Postives = 74/76 (97.37%), Query Frame = 2 
Query:   11 MQIFVKTLTGKTITLEVESSHTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 238
            MQIFVKTLTGKTITLEVE S TI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC876308 vs. ExPASy Swiss-Prot
Match: UBIQ_MANSE (Ubiquitin OS=Manduca sexta PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 9.499e-35
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 2 
Query:  239 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 466
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 143.28 bits (360), Expect = 6.157e-34
Identity = 72/76 (94.74%), Postives = 74/76 (97.37%), Query Frame = 2 
Query:   11 MQIFVKTLTGKTITLEVESSHTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 238
            MQIFVKTLTGKTITLEVE S TI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC876308 vs. ExPASy Swiss-Prot
Match: UBIQ_MACFA (Ubiquitin OS=Macaca fascicularis GN=UBA52 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 9.499e-35
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 2 
Query:  239 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 466
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 143.28 bits (360), Expect = 6.157e-34
Identity = 72/76 (94.74%), Postives = 74/76 (97.37%), Query Frame = 2 
Query:   11 MQIFVKTLTGKTITLEVESSHTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 238
            MQIFVKTLTGKTITLEVE S TI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC876308 vs. ExPASy Swiss-Prot
Match: UBIQ_ICTPU (Ubiquitin OS=Ictalurus punctatus GN=rps27a PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 9.499e-35
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 2 
Query:  239 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 466
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 143.28 bits (360), Expect = 6.157e-34
Identity = 72/76 (94.74%), Postives = 74/76 (97.37%), Query Frame = 2 
Query:   11 MQIFVKTLTGKTITLEVESSHTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 238
            MQIFVKTLTGKTITLEVE S TI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
The following BLAST results are available for this feature:
BLAST of FC876308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99
Match NameE-valueIdentityDescription
UBIQ_RABIT9.499e-3596.05Ubiquitin OS=Oryctolagus cuniculus PE=1 SV=1[more]
UBIQ_PONPY9.499e-3596.05Ubiquitin OS=Pongo pygmaeus GN=UBA52 PE=3 SV=2[more]
UBIQ_PLUXY9.499e-3596.05Ubiquitin OS=Plutella xylostella PE=3 SV=1[more]
UBIQ_PIG9.499e-3596.05Ubiquitin OS=Sus scrofa GN=UBA52 PE=3 SV=1[more]
UBIQ_PANTR9.499e-3596.05Ubiquitin OS=Pan troglodytes GN=UBB PE=1 SV=2[more]
UBIQ_OPHHA9.499e-3596.05Ubiquitin OS=Ophiophagus hannah PE=3 SV=1[more]
UBIQ_MOUSE9.499e-3596.05Ubiquitin OS=Mus musculus GN=Rps27a PE=1 SV=1[more]
UBIQ_MANSE9.499e-3596.05Ubiquitin OS=Manduca sexta PE=3 SV=1[more]
UBIQ_MACFA9.499e-3596.05Ubiquitin OS=Macaca fascicularis GN=UBA52 PE=3 SV=... [more]
UBIQ_ICTPU9.499e-3596.05Ubiquitin OS=Ictalurus punctatus GN=rps27a PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionC32003B11EF DevOvary1 Citrus clementina cDNA clone C32003B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876308 ID=FC876308; Name=FC876308; organism=Citrus clementina; type=EST; length=509bp
TCTGTTCGATATGCAGATCTTCGTGAAAACCTTGACCGGAAAAACTATTA
CTCTCGAAGTCGAGAGCTCACACACCATCGACAACGTAAAGGCCAAGATC
CAAGACAAGGAGGGAATTCCGCCGGACCAGCAGAGGCTTATCTTTGCTGG
AAAGCAGCTCGAGGACGGCCGCACCTTGGCCGATTACAACATCCAGAAGG
AGTCAACCCTTCATCTTGTCCTTCGTCTCCGCGGAGGCATGCAGATCTTC
GTGAAAACCCTGACTGGCAAAACTATTACTCTCGAAGTCGAGAGCTCCGA
CACCATCGACAACGTCAAGGCGAAGATTCAAGACAAGGAGGGAATCCCCC
CGGACCAGCAGAGGCTTATCTTCGCTGGAAAGCAGCTCGAGGATGGCCGC
ACCTTGGCCGATTACAACATACAGAAGGAGTCAACCCTCCATCTTGTCCT
TCGTCTCCGCGGAGGCATGCAGATCTTTGTCAAAACCCTAACCGGGAAGA
CGATAACCC
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