FC876315

Overview
NameFC876315
Unique NameFC876315
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876315 vs. ExPASy Swiss-Prot
Match: CALR_RABIT (Calreticulin OS=Oryctolagus cuniculus GN=CALR PE=1 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 3.503e-56
Identity = 103/189 (54.50%), Postives = 132/189 (69.84%), Query Frame = 1
Query:  103 VFFEERF--DDGWESRWVTSDWKKDENTAGEWNYTAGKWNGDPN-DKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDAPYSILIDNVEKQSGSLYSDWDLLPPR 660
            V+F+E+F   DGW  RW+ S  K D    G++  ++GK+ GD   DKG+QTS+D RFYA+SA F  FSNK + LV QF+VKHEQ +DCGGGY+KL    +DQK   GD+ Y+IMFGPDICG  TKKVH I  Y G N LI K++ C+ D+ TH+YT I+RPD  Y + IDN + +SGSL  DWD LPP+
Sbjct:   21 VYFKEQFLDGDGWTERWIESKHKSD---FGKFVLSSGKFYGDQEKDKGLQTSQDARFYALSARFEPFSNKGQPLVVQFTVKHEQNIDCGGGYVKLFPAGLDQKDMHGDSEYNIMFGPDICGPGTKKVHVIFNYKGKNVLINKDIRCKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPPK 206          

HSP 2 Score: 25.0238 bits (53), Expect = 3.503e-56
Identity = 10/14 (71.43%), Postives = 10/14 (71.43%), Query Frame = 3
Query:  651 PSKTIXDPDAKKPE 692
            P K I DPDA KPE
Sbjct:  204 PPKKIKDPDASKPE 217          
BLAST of FC876315 vs. ExPASy Swiss-Prot
Match: CALR_BOVIN (Calreticulin OS=Bos taurus GN=CALR PE=1 SV=2)

HSP 1 Score: 212.616 bits (540), Expect = 2.242e-55
Identity = 102/189 (53.97%), Postives = 132/189 (69.84%), Query Frame = 1
Query:  103 VFFEERF--DDGWESRWVTSDWKKDENTAGEWNYTAGKWNGDPN-DKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDAPYSILIDNVEKQSGSLYSDWDLLPPR 660
            V+F+E+F   DGW  RW+ S  K D    G++  ++GK+ GD   DKG+QTS+D RFYA+SA F  FSNK +TLV QF+VKHEQ +DCGGGY+KL    +DQ    GD+ Y+IMFGPDICG  TKKVH I  Y G N LI K++ C+ D+ TH+YT I+RP+  Y + IDN + +SGSL  DWD LPP+
Sbjct:   21 VYFKEQFLDGDGWTERWIESKHKPD---FGKFVLSSGKFYGDQEKDKGLQTSQDARFYALSARFEPFSNKGQTLVVQFTVKHEQNIDCGGGYVKLFPAGLDQTDMHGDSEYNIMFGPDICGPGTKKVHVIFNYKGKNVLINKDIRCKDDEFTHLYTLIVRPNNTYEVKIDNSQVESGSLEDDWDFLPPK 206          

HSP 2 Score: 24.6386 bits (52), Expect = 2.242e-55
Identity = 10/14 (71.43%), Postives = 10/14 (71.43%), Query Frame = 3
Query:  651 PSKTIXDPDAKKPE 692
            P K I DPDA KPE
Sbjct:  204 PPKKIKDPDAAKPE 217          
BLAST of FC876315 vs. ExPASy Swiss-Prot
Match: CALR_CAEBR (Calreticulin OS=Caenorhabditis briggsae GN=crt-1 PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.871e-54
Identity = 102/189 (53.97%), Postives = 136/189 (71.96%), Query Frame = 1
Query:  103 VFFEERFDDG-WESRWVTSDWKKDENTAGEWNYTAGKW-NGDPNDKGIQTSEDYRFYAISAEFP-EFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDAPYSILIDNVEKQSGSLYSDWDLLPPR 660
            V+F+E F+D  WE RWV S  K D    G +  +AGK+ + +  D+GIQTS+D +FY+ +A+F  EFSNK KTLV Q++VKHEQ +DCGGGY+K++ G+ D   F G+TPY++MFGPDICG  T++VH IL Y G NKLIKKE+ C++D+LTH+YT IL  D  Y + ID    Q+GSL  DWDLLP +
Sbjct:   17 VYFKEEFNDASWEKRWVQSKHKDD---FGAFKLSAGKFFDVESRDQGIQTSQDAKFYSRAAKFDKEFSNKGKTLVIQYTVKHEQGIDCGGGYVKVMRGDADLADFHGETPYNVMFGPDICG-PTRRVHVILNYKGENKLIKKEITCKSDELTHLYTLILNADNTYEVKIDGESAQTGSLEEDWDLLPAK 201          

HSP 2 Score: 27.7202 bits (60), Expect = 1.871e-54
Identity = 11/14 (78.57%), Postives = 12/14 (85.71%), Query Frame = 3
Query:  651 PSKTIXDPDAKKPE 692
            P+K I DPDAKKPE
Sbjct:  199 PAKKIKDPDAKKPE 212          
BLAST of FC876315 vs. ExPASy Swiss-Prot
Match: CALR_CAEEL (Calreticulin OS=Caenorhabditis elegans GN=crt-1 PE=1 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 2.652e-53
Identity = 100/189 (52.91%), Postives = 135/189 (71.43%), Query Frame = 1
Query:  103 VFFEERFDDG-WESRWVTSDWKKDENTAGEWNYTAGKW-NGDPNDKGIQTSEDYRFYAISAEFP-EFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDAPYSILIDNVEKQSGSLYSDWDLLPPR 660
            V+F+E F+D  WE RWV S  K D    G +  +AGK+ + +  D+GIQTS+D +FY+ +A+F  +FSNK KTLV Q++VKHEQ +DCGGGY+K++  + D   F G+TPY++MFGPDICG  T++VH IL Y G NKLIKKE+ C++D+LTH+YT IL  D  Y + ID    Q+GSL  DWDLLP +
Sbjct:   17 VYFKEEFNDASWEKRWVQSKHKDD---FGAFKLSAGKFFDVESRDQGIQTSQDAKFYSRAAKFDKDFSNKGKTLVIQYTVKHEQGIDCGGGYVKVMRADADLGDFHGETPYNVMFGPDICG-PTRRVHVILNYKGENKLIKKEITCKSDELTHLYTLILNSDNTYEVKIDGESAQTGSLEEDWDLLPAK 201          

HSP 2 Score: 27.7202 bits (60), Expect = 2.652e-53
Identity = 11/14 (78.57%), Postives = 12/14 (85.71%), Query Frame = 3
Query:  651 PSKTIXDPDAKKPE 692
            P+K I DPDAKKPE
Sbjct:  199 PAKKIKDPDAKKPE 212          
BLAST of FC876315 vs. ExPASy Swiss-Prot
Match: CALR_ONCVO (Calreticulin OS=Onchocerca volvulus GN=crt-1 PE=2 SV=2)

HSP 1 Score: 201.445 bits (511), Expect = 9.987e-53
Identity = 96/189 (50.79%), Postives = 131/189 (69.31%), Query Frame = 1
Query:  103 VFFEERF-DDGWESRWVTSDWKKDENTAGEWNYTAGKWNGDP-NDKGIQTSEDYRFYAISAEFPE-FSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDAPYSILIDNVEKQSGSLYSDWDLLPPR 660
            ++F+E F DD WE RW+ S  K D    G+W  + GK+ GD   DKG++T++D +FY+I A+F + FSNK K+LV QFSVKHEQ +DCGGGY+KL++ +V+ +   G+TPY IMFGPDICG  TKKVH I  Y   N +IKK++ C+ D  TH+YT I+  D  Y + ID  + +SG L +DWD LPP+
Sbjct:   19 IYFKEDFSDDDWEKRWIKSKHKDD---FGKWEISHGKFYGDAVKDKGLKTTQDAKFYSIGAKFDKSFSNKGKSLVIQFSVKHEQDIDCGGGYVKLMASDVNLEDSHGETPYHIMFGPDICGPGTKKVHVIFHYKDRNHMIKKDIRCKDDVFTHLYTLIVNSDNTYEVQIDGEKAESGELEADWDFLPPK 204          

HSP 2 Score: 26.9498 bits (58), Expect = 9.987e-53
Identity = 11/14 (78.57%), Postives = 11/14 (78.57%), Query Frame = 3
Query:  651 PSKTIXDPDAKKPE 692
            P K I DPDAKKPE
Sbjct:  202 PPKKIKDPDAKKPE 215          
BLAST of FC876315 vs. ExPASy Swiss-Prot
Match: CALR_EUGGR (Calreticulin OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.954e-52
Identity = 103/188 (54.79%), Postives = 133/188 (70.74%), Query Frame = 1
Query:  103 VFFEERFDDGWESRWVTSDWKKDENTAGEWNYTAGKWNGDP-NDKGIQTSEDYRFYAISAEFPE-FSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDAPYSILIDNVEKQSGSLYSDWDLLPPR 660
            ++++E F+  WE+RW  S  K D    G++  T+GK+ GD   D GIQTS+D +FYAIS+     FSN+ K LV QFSVKHEQ +DCGGGY+KLL   VD  KF GDTPY IMFGPDICG +TKK+H ILTY G N L KKE  CETD L+H YT +++ D  Y +L+D V+K+SG+L  DW++L P+
Sbjct:   20 IYYKETFEPDWETRWTHSTAKSDY---GKFKLTSGKFYGDKAKDAGIQTSQDAKFYAISSPIASSFSNEGKDLVLQFSVKHEQDIDCGGGYLKLLPS-VDAAKFTGDTPYHIMFGPDICG-ATKKIHFILTYKGKNLLWKKEPRCETDTLSHTYTAVIKADRTYEVLVDQVKKESGTLEEDWEILKPK 202          
BLAST of FC876315 vs. ExPASy Swiss-Prot
Match: CALR_DROME (Calreticulin OS=Drosophila melanogaster GN=Crc PE=1 SV=2)

HSP 1 Score: 200.675 bits (509), Expect = 3.132e-51
Identity = 99/188 (52.66%), Postives = 124/188 (65.96%), Query Frame = 1
Query:  103 VFFEERFD-DGWESRWVTSDWKKDENTAGEWNYTAGKWNGDPN-DKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDAPYSILIDNVEKQSGSLYSDWDLLPPR 660
            V+ +E FD + WE  W+ S  K      G++  T G +  D   DKGIQTS+D RFYA S +F  FSN+DK LV QFSVKHEQ +DCGGGY+KL    +DQ    G++PY IMFGPDICG  TKKVH I +Y G N LI K++ C+ D  TH YT I+RPD  Y +LIDN + +SG+L  DWD L P+
Sbjct:   21 VYLKENFDNENWEDTWIYS--KHPGKEFGKFVLTPGTFYNDAEADKGIQTSQDARFYAASRKFDGFSNEDKPLVVQFSVKHEQNIDCGGGYVKLFDCSLDQTDMHGESPYEIMFGPDICGPGTKKVHVIFSYKGKNHLISKDIRCKDDVYTHFYTLIVRPDNTYEVLIDNEKVESGNLEDDWDFLAPK 206          

HSP 2 Score: 22.7126 bits (47), Expect = 3.132e-51
Identity = 9/11 (81.82%), Postives = 9/11 (81.82%), Query Frame = 3
Query:  660 TIXDPDAKKPE 692
            TI DPD KKPE
Sbjct:  224 TIPDPDDKKPE 234          
BLAST of FC876315 vs. ExPASy Swiss-Prot
Match: CALR_SCHMA (Calreticulin OS=Schistosoma mansoni PE=2 SV=2)

HSP 1 Score: 194.126 bits (492), Expect = 3.695e-49
Identity = 92/188 (48.94%), Postives = 127/188 (67.55%), Query Frame = 1
Query:  103 VFFEERFDDGWESRWVTSDWKKDENTAGEWNYTAGKWNGDP-NDKGIQTSEDYRFYAISAEFPE-FSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDAPYSILIDNVEKQSGSLYSDWDLLPPR 660
            V+F E F +     WV S +  ++   GE+   AGK   DP  D G++T++D RFY I+ +  E FSN+ KT+V QF+VK ++ + CGG Y+KLL  ++D KKF G++PY IMFGPDICG +TKKVH I  Y G N LIKKE+PC+ D  TH+YT I+ P+  Y +L+DN + + GSL  DWD+LPP+
Sbjct:   19 VWFSETFPNESIENWVQSTYNAEKQ--GEFKVEAGKSPVDPIEDLGLKTTQDARFYGIARKISEPFSNRGKTMVLQFTVKFDKTVSCGGAYIKLLGSDIDPKKFHGESPYKIMFGPDICGMATKKVHVIFNYKGKNHLIKKEIPCKDDLKTHLYTLIVNPNNKYEVLVDNAKVEEGSLEDDWDMLPPK 204          

HSP 2 Score: 22.3274 bits (46), Expect = 3.695e-49
Identity = 9/12 (75.00%), Postives = 10/12 (83.33%), Query Frame = 3
Query:  657 KTIXDPDAKKPE 692
            KTI D DAKKP+
Sbjct:  238 KTIPDMDAKKPD 249          
BLAST of FC876315 vs. ExPASy Swiss-Prot
Match: CALR3_MOUSE (Calreticulin-3 OS=Mus musculus GN=Calr3 PE=1 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.449e-47
Identity = 92/185 (49.73%), Postives = 124/185 (67.03%), Query Frame = 1
Query:  103 VFFEERFDDG--WESRWVTSDWKKDENTAGEWNYTAGKWNGDPN-DKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDAPYSILIDNVEKQSGSLYSDWDL 648
            V+F+E F DG  W +RWV S    +++  G +  ++GK+ G    DKG+QT+++ RFYAISA F  FSNK KTLV Q++VKHEQK+DCGGGY+K+   ++DQKK  G + Y IMFGPDICG+  KKVH IL +       KK + C+ D  TH+YT ILRPD  Y + +D    +SGS+  DW+L
Sbjct:   21 VYFQEEFLDGERWRNRWVQST---NDSQFGHFRVSSGKFYGHKEKDKGLQTTQNSRFYAISASFKPFSNKGKTLVIQYTVKHEQKMDCGGGYIKVFPSDLDQKKMNGKSQYYIMFGPDICGFDIKKVHVILYFKNQYHENKKPIRCKVDGFTHLYTLILRPDLSYEVKVDGQSIESGSIEYDWNL 202          
BLAST of FC876315 vs. ExPASy Swiss-Prot
Match: CALR3_HUMAN (Calreticulin-3 OS=Homo sapiens GN=CALR3 PE=1 SV=2)

HSP 1 Score: 186.422 bits (472), Expect = 1.227e-46
Identity = 91/185 (49.19%), Postives = 123/185 (66.49%), Query Frame = 1
Query:  103 VFFEERFDDG--WESRWVTSDWKKDENTAGEWNYTAGKWNGDPN-DKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDAPYSILIDNVEKQSGSLYSDWDL 648
            V+F+E F DG  W +RW+ S    +++  G +  ++GK+ G    DKG+QT+++ RFYAISA F  FSNK KTLV Q++VKHEQK+DCGGGY+K+   ++DQK   G + Y IMFGPDICG+  KKVH IL +       KK + C+ D  TH+YT ILRPD  Y + ID    +SGS+  DW+L
Sbjct:   21 VYFQEEFLDGEHWRNRWLQST---NDSRFGHFRLSSGKFYGHKEKDKGLQTTQNGRFYAISARFKPFSNKGKTLVIQYTVKHEQKMDCGGGYIKVFPADIDQKNLNGKSQYYIMFGPDICGFDIKKVHVILHFKNKYHENKKLIRCKVDGFTHLYTLILRPDLSYDVKIDGQSIESGSIEYDWNL 202          
The following BLAST results are available for this feature:
BLAST of FC876315 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
CALR_RABIT3.503e-5654.50Calreticulin OS=Oryctolagus cuniculus GN=CALR PE=1... [more]
CALR_BOVIN2.242e-5553.97Calreticulin OS=Bos taurus GN=CALR PE=1 SV=2[more]
CALR_CAEBR1.871e-5453.97Calreticulin OS=Caenorhabditis briggsae GN=crt-1 P... [more]
CALR_CAEEL2.652e-5352.91Calreticulin OS=Caenorhabditis elegans GN=crt-1 PE... [more]
CALR_ONCVO9.987e-5350.79Calreticulin OS=Onchocerca volvulus GN=crt-1 PE=2 ... [more]
CALR_EUGGR1.954e-5254.79Calreticulin OS=Euglena gracilis PE=2 SV=1[more]
CALR_DROME3.132e-5152.66Calreticulin OS=Drosophila melanogaster GN=Crc PE=... [more]
CALR_SCHMA3.695e-4948.94Calreticulin OS=Schistosoma mansoni PE=2 SV=2[more]
CALR3_MOUSE1.449e-4749.73Calreticulin-3 OS=Mus musculus GN=Calr3 PE=1 SV=1[more]
CALR3_HUMAN1.227e-4649.19Calreticulin-3 OS=Homo sapiens GN=CALR3 PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC32003C07EF DevOvary1 Citrus clementina cDNA clone C32003C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876315 ID=FC876315; Name=FC876315; organism=Citrus clementina; type=EST; length=694bp
GGAGAGCACTTCCTCTCTCTCGCTCTAAAAATGGCGAAATTAAACCCTAG
CTTTCTCTCTCTAACTCTCCTCACTATCTTCCTGACAATTGCCTCTGCTC
ACGTCTTCTTCGAAGAACGCTTTGACGATGGATGGGAAAGCCGGTGGGTT
ACATCTGATTGGAAGAAAGATGAGAACACGGCTGGAGAATGGAACTACAC
TGCTGGGAAATGGAATGGGGACCCGAATGATAAAGGTATTCAAACTAGTG
AAGACTACAGGTTCTATGCTATTTCAGCTGAATTCCCTGAATTCAGCAAC
AAGGACAAGACACTCGTGTTCCAGTTTTCTGTTAAGCACGAACAGAAGCT
TGACTGTGGTGGTGGCTACATGAAGTTGCTTAGTGGCGAAGTTGATCAGA
AGAAATTTGGTGGTGATACCCCTTACAGTATCATGTTTGGACCAGATATC
TGTGGTTATAGCACTAAGAAAGTGCATGCCATTCTTACCTACAATGGAAC
AAACAAATTGATCAAGAAGGAAGTACCATGTGAGACTGACCAACTCACTC
ATGTTTATACTTTCATCCTCCGTCCAGATGCTCCTTACAGCATCCTCATT
GACAATGTGGAGAAACAATCTGGTAGCTTGTACTCTGATTGGGATCTCCT
CCCTCCAAGACCATCNAGGATCCTGACGCCAAGAAACCTGAAGA
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