FC876315

Overview
NameFC876315
Unique NameFC876315
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10332 contig Ccv1_Contig10332:1..695. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876315 vs. ExPASy Swiss-Prot
Match: CALX_CANFA (Calnexin OS=Canis familiaris GN=CANX PE=1 SV=3)

HSP 1 Score: 110.153 bits (274), Expect = 3.899e-24
Identity = 77/210 (36.67%), Postives = 108/210 (51.43%), Query Frame = 1
Query:  103 VFFEERFDDGWESRWVTSDWKKDENTAGEWNYTAGKWNGD-------PNDKGIQTSEDYRFYAISAEFPE-FSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSG--EVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCE----------TDQLTHVYTFILRPDAPYSILIDNVEKQSGSLYSDWDLLPP-RPSR 669
            V+F + FD G  S W+ S  KKD+ T  E     GKW  D       P DKG+      + +AISA+  + F    K L+ Q+ V  +  ++CGG Y+KLLS   E++  +F   TPY+IMFGPD CG    K+H I  +      + +E   +          TD+ TH+YT IL PD  + IL+D     SG+L +  D+ PP  PSR
Sbjct:   70 VYFADSFDRGTLSGWILSKAKKDD-TDDEIAKYDGKWEVDEMKETKLPGDKGLVLMSRAKHHAISAKLNKPFLFDTKPLIVQYEVNFQNGIECGGAYVKLLSKTPELNLDQFHDKTPYTIMFGPDKCG-EDYKLHFIFRHKNPKTGVYEEKHAKRPDADLKTYFTDKKTHLYTLILNPDNSFEILVDQSIVNSGNLLN--DMTPPVNPSR 275          

HSP 2 Score: 22.3274 bits (46), Expect = 3.899e-24
Identity = 8/14 (57.14%), Postives = 11/14 (78.57%), Query Frame = 3
Query:  651 PSKTIXDPDAKKPE 692
            PS+ I DP+ +KPE
Sbjct:  273 PSREIEDPEDQKPE 286          
BLAST of FC876315 vs. ExPASy Swiss-Prot
Match: CLGN_BOVIN (Calmegin OS=Bos taurus GN=CLGN PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.246e-23
Identity = 75/218 (34.40%), Postives = 107/218 (49.08%), Query Frame = 1
Query:  103 VFFEERFDDGWESRWVTSDWKKDENTA------GEWNYTAGKWNGDPNDKGIQTSEDYRFYAISAEFPE-FSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGE--VDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCE----------TDQLTHVYTFILRPDAPYSILIDNVEKQSGSLYSDWDLLPP--RPSRILTPRNLK 693
            V+F E FD G  + WV S  KKD+  A      G W     K N  P D+G+      + +AISA   + F   DK LV Q+ V  +  +DCGG Y+KLL+    ++ + F   T Y+IMFGPD CG    K+H I  +      + +E   +          TD+ TH+YT ++ PD  + +LID +    GSL    D++PP   P  I  P + K
Sbjct:   56 VYFTETFDSGRLAGWVLSKAKKDDIDAEISIYDGRWEIEELKENRIPGDRGLVLKSRAKHHAISAVLAKPFIFADKPLVVQYEVNFQDGIDCGGAYIKLLADTDGLNLENFYDKTSYTIMFGPDKCG-EDYKLHFIFRHKHPKTGVFEEKHAKPPDVDLKRFFTDRKTHLYTLVMNPDDTFEVLIDQIVVNKGSLLE--DVVPPINPPKEIEDPTDEK 270          
BLAST of FC876315 vs. ExPASy Swiss-Prot
Match: CALX2_ARATH (Calnexin homolog 2 OS=Arabidopsis thaliana GN=At5g07340 PE=2 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 7.074e-23
Identity = 68/194 (35.05%), Postives = 100/194 (51.55%), Query Frame = 1
Query:  115 ERFDDGWESRWVTSDWKKDENTAGEWNYTAGKWNGDPNDKGIQTSEDYRFYAISAEFP---EFSNKDKTLVFQFSVKHEQKLDCGGGYMKLL----SGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNK------LIKKEVPCETDQLTHVYTFILRPDAPYSILIDNVEKQSGSLYSDWDLLPP 657
            E FD+ ++ RWV S+  + +   G W +   + +   +D G+  SE  + Y I  E       +  + T+V Q+  + ++ L+CGG Y+K L    +G V Q  F  D+PYSIMFGPD CG +T KVH IL +            +K       D L+HVYT +L+ D    IL+D  EK+ G+L S  D  PP
Sbjct:   33 ESFDEPFDGRWVVSEKAEYQ---GVWKHEKSEGH---DDYGLLVSEKAKKYGIVKELDVDEPLNLNEGTVVLQYEARFQEGLECGGAYLKYLRPQEAGWVPQG-FDNDSPYSIMFGPDKCG-ATNKVHFILKHKNPKSGEFVEHHLKFPPSVPFDMLSHVYTAVLKSDNEVRILVDGEEKKKGNLLSAEDFEPP 218          

HSP 2 Score: 27.335 bits (59), Expect = 7.074e-23
Identity = 11/14 (78.57%), Postives = 12/14 (85.71%), Query Frame = 3
Query:  651 PSKTIXDPDAKKPE 692
            PSKTI DP+ KKPE
Sbjct:  221 PSKTIPDPEDKKPE 234          
BLAST of FC876315 vs. ExPASy Swiss-Prot
Match: CLGN_MOUSE (Calmegin OS=Mus musculus GN=Clgn PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.631e-22
Identity = 68/204 (33.33%), Postives = 102/204 (50.00%), Query Frame = 1
Query:  103 VFFEERFDDGWESRWVTSDWKKDENTA------GEWNYTAGKWNGDPNDKGIQTSEDYRFYAISAEFPE-FSNKDKTLVFQFSVKHEQKLDCGGGYMKLLS--GEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCE----------TDQLTHVYTFILRPDAPYSILIDNVEKQSGSLYSDWDLLPP 657
            V+F E FD G  + WV S  KKD+  +      G W     K N  P D+G+      + +AI+A   + F   DK L+ Q+ V  +  +DCGG Y+KLL+  G++  + F   T Y+IMFGPD CG    K+H I  +      + +E   +          TD+ TH+YT ++ PD  + +LID      G+L    D++PP
Sbjct:   60 VYFTETFDSGNLAGWVLSKAKKDDMDSEIAIYDGRWEIEELKENQVPGDRGLVLKSKAKHHAIAAVLEKPFIFADKPLIVQYEVNFQDGIDCGGAYIKLLADTGDLILENFYDKTSYTIMFGPDKCG-EDYKLHLIFRHKHPKTGVFEEKHAKPPDVDLKEFFTDRKTHLYTLVMNPDDTFEVLIDQKVVNQGTLLD--DVVPP 260          

HSP 2 Score: 21.1718 bits (43), Expect = 2.631e-22
Identity = 8/14 (57.14%), Postives = 9/14 (64.29%), Query Frame = 3
Query:  651 PSKTIXDPDAKKPE 692
            P + I DP  KKPE
Sbjct:  263 PPREIDDPSDKKPE 276          
BLAST of FC876315 vs. ExPASy Swiss-Prot
Match: CLGN_HUMAN (Calmegin OS=Homo sapiens GN=CLGN PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.694e-22
Identity = 73/218 (33.49%), Postives = 103/218 (47.25%), Query Frame = 1
Query:  103 VFFEERFDDGWESRWVTSDWKKDENTA------GEWNYTAGKWNGDPNDKGIQTSEDYRFYAISAEFPE-FSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQ--KKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCE----------TDQLTHVYTFILRPDAPYSILIDNVEKQSGSLYSDWDLLPP--RPSRILTPRNLK 693
            V+F E FD G  + WV S  KKD+         G W     K N  P D+G+      + +AISA   + F   DK L+ Q+ V  +  +DCGG Y+KLL+   D   + F   T Y IMFGPD CG    K+H I  +      + +E   +          TD+ TH+YT ++ PD  + +L+D      GSL    D++PP   P  I  P + K
Sbjct:   60 VYFAETFDSGRLAGWVLSKAKKDDMDEEISIYDGRWEIEELKENQVPGDRGLVLKSRAKHHAISAVLAKPFIFADKPLIVQYEVNFQDGIDCGGAYIKLLADTDDLILENFYDKTSYIIMFGPDKCG-EDYKLHFIFRHKHPKTGVFEEKHAKPPDVDLKKFFTDRKTHLYTLVMNPDDTFEVLVDQTVVNKGSLLE--DVVPPIKPPKEIEDPNDKK 274          
BLAST of FC876315 vs. ExPASy Swiss-Prot
Match: CALX_SCHPO (Calnexin homolog OS=Schizosaccharomyces pombe GN=cal1 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.670e-19
Identity = 67/211 (31.75%), Postives = 106/211 (50.24%), Query Frame = 1
Query:  115 ERFDDGWESRWVTSDWKKDENTAGEWNYTAGKWNGDPN--------DKGIQTSEDYRFYAISAEFPEFSNK-DKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNG--TNKLIKKEVPCETDQL-----THVYTFILRPDAPYSILIDNVEKQSGSLYSDWDLLPP--RPSRILTPRNLK 693
            E+F   W  RW+ S  K+  N   E +Y  G+W  + +        + G+   ++   +AIS EF E  N+ +K LV Q+ V  E+ L+CGG Y+KLL+ E    +      Y IMFGPD CG +  +VH I  +    T +  +K +      L     T++YT I++PD  + + I+    + GSL+  +D +PP   P  I  P ++K
Sbjct:   44 EQFQGAWSERWIPSHAKRFVNGIEEMSYV-GEWTVEESSGPGALKGEAGLVMKDEAAHHAISYEFDEPINEPEKDLVVQYEVNPEEGLNCGGAYLKLLA-EPTHGEMSNSIDYRIMFGPDKCGVN-DRVHFIFKHKNPLTGEYSEKHLDSRPASLLKPGITNLYTLIVKPDQTFEVRINGDVVRQGSLF--YDFIPPVLPPVEIYDPEDIK 249          
BLAST of FC876315 vs. ExPASy Swiss-Prot
Match: CALX_CAEEL (Calnexin homolog OS=Caenorhabditis elegans GN=cnx-1 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.858e-19
Identity = 68/202 (33.66%), Postives = 95/202 (47.03%), Query Frame = 1
Query:  145 WVTSDWKKDENTA------GEWNYTAGKWNGDPNDKGIQTSEDYRFYAISAEF-PEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLS--GEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTY----NGTNKLIKKEVPCE------TDQLTHVYTFILRPDAPYSILIDNVEKQSGSLYSDWDLLPPRPSRILTPRNLK 693
            W+ S  KKD+  +      GEW+  A        D G+      R +AI+A+    F+    T V Q+ +K E+  +CGGGY+KLLS   E D   F   T Y+IMFGPD CG +T KVH I  Y    NGT        P         D  TH++T +++P   YS+ +D      G++ SD       P +I    +LK
Sbjct:   75 WIKSLAKKDDVDSDIAKYNGEWSIGAPTKVSIEGDLGLIVKTKARHHAIAAKLNTPFAFDANTFVVQYDIKFEEGQECGGGYLKLLSEGAEKDLANFQDKTAYTIMFGPDKCG-ATGKVHLIFRYKNPINGTISEYHANQPTTIGSTYWDDHNTHLFTLVVKPTGEYSVSVDGKSLYYGNMMSDVTPALTPPKQIFDETDLK 275          
BLAST of FC876315 vs. ExPASy Swiss-Prot
Match: CALR_PIG (Calreticulin (Fragment) OS=Sus scrofa GN=CALR PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 7.015e-18
Identity = 46/88 (52.27%), Postives = 61/88 (69.32%), Query Frame = 1
Query:  103 VFFEERF--DDGWESRWVTSDWKKDENTAGEWNYTAGKWNGDPN-DKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDC 357
            ++F+E+F   DGW  RW+ S  K D    G +  ++GK+ GD   DKG+QTS+D RFYA+SA F  FSNK +TLV QF+VKHEQ +DC
Sbjct:   21 IYFKEQFLDGDGWTDRWIESKHKPD---FGRFVLSSGKFYGDQEKDKGLQTSQDARFYALSARFEPFSNKGQTLVVQFTVKHEQNIDC 105          
The following BLAST results are available for this feature:
BLAST of FC876315 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
CALX_CANFA3.899e-2436.67Calnexin OS=Canis familiaris GN=CANX PE=1 SV=3[more]
CLGN_BOVIN4.246e-2334.40Calmegin OS=Bos taurus GN=CLGN PE=2 SV=1[more]
CALX2_ARATH7.074e-2335.05Calnexin homolog 2 OS=Arabidopsis thaliana GN=At5g... [more]
CLGN_MOUSE2.631e-2233.33Calmegin OS=Mus musculus GN=Clgn PE=2 SV=1[more]
CLGN_HUMAN4.694e-2233.49Calmegin OS=Homo sapiens GN=CLGN PE=1 SV=1[more]
CALX_SCHPO1.670e-1931.75Calnexin homolog OS=Schizosaccharomyces pombe GN=c... [more]
CALX_CAEEL4.858e-1933.66Calnexin homolog OS=Caenorhabditis elegans GN=cnx-... [more]
CALR_PIG7.015e-1852.27Calreticulin (Fragment) OS=Sus scrofa GN=CALR PE=1... [more]

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Properties
Property NameValue
Genbank descriptionC32003C07EF DevOvary1 Citrus clementina cDNA clone C32003C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876315 ID=FC876315; Name=FC876315; organism=Citrus clementina; type=EST; length=694bp
GGAGAGCACTTCCTCTCTCTCGCTCTAAAAATGGCGAAATTAAACCCTAG
CTTTCTCTCTCTAACTCTCCTCACTATCTTCCTGACAATTGCCTCTGCTC
ACGTCTTCTTCGAAGAACGCTTTGACGATGGATGGGAAAGCCGGTGGGTT
ACATCTGATTGGAAGAAAGATGAGAACACGGCTGGAGAATGGAACTACAC
TGCTGGGAAATGGAATGGGGACCCGAATGATAAAGGTATTCAAACTAGTG
AAGACTACAGGTTCTATGCTATTTCAGCTGAATTCCCTGAATTCAGCAAC
AAGGACAAGACACTCGTGTTCCAGTTTTCTGTTAAGCACGAACAGAAGCT
TGACTGTGGTGGTGGCTACATGAAGTTGCTTAGTGGCGAAGTTGATCAGA
AGAAATTTGGTGGTGATACCCCTTACAGTATCATGTTTGGACCAGATATC
TGTGGTTATAGCACTAAGAAAGTGCATGCCATTCTTACCTACAATGGAAC
AAACAAATTGATCAAGAAGGAAGTACCATGTGAGACTGACCAACTCACTC
ATGTTTATACTTTCATCCTCCGTCCAGATGCTCCTTACAGCATCCTCATT
GACAATGTGGAGAAACAATCTGGTAGCTTGTACTCTGATTGGGATCTCCT
CCCTCCAAGACCATCNAGGATCCTGACGCCAAGAAACCTGAAGA
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