FC876316

Overview
NameFC876316
Unique NameFC876316
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length298
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10260 contig Ccv1_Contig10260:13..310. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: CHSY_EQUAR (Chalcone synthase OS=Equisetum arvense GN=CHS PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.850e-25
Identity = 56/85 (65.88%), Postives = 64/85 (75.29%), Query Frame = 1
Query:   43 EMATVQEIRNAQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNMC 297
            E A     R AQRA+GPATVLAIGTA PA+   Q+ YPD+YF IT S+HMTELK KF RMC KS IKKR+MHL  EILK NP++C
Sbjct:    6 ESADASSRRLAQRANGPATVLAIGTANPANVFEQSSYPDFYFDITNSQHMTELKLKFSRMCQKSGIKKRYMHLNSEILKANPSLC 90          
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: DPS1_PINST (Pinosylvin synthase 1 OS=Pinus strobus GN=STS1 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.045e-24
Identity = 48/81 (59.26%), Postives = 67/81 (82.72%), Query Frame = 1
Query:   55 VQEIRNAQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNMC 297
            ++  R +QRADG A++LAIGTA P +  +Q+ YPDYYFR+T +E  T+LK+KF+R+C++S IKKRHM+LTEEILK+NP +C
Sbjct:    9 LEAFRKSQRADGFASILAIGTANPPNVVDQSTYPDYYFRVTNNEDNTDLKDKFKRICERSAIKKRHMYLTEEILKKNPELC 89          
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: CHSA_IPOPL (Chalcone synthase A (Fragment) OS=Ipomoea platensis GN=CHSA PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.488e-24
Identity = 49/77 (63.64%), Postives = 64/77 (83.12%), Query Frame = 1
Query:   67 RNAQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNMC 297
            R A+R +G A +LA+GTATPA+  +Q  YPD+YFRIT SEH+ E KEKFRR+C+KS I+KRH+ LTEE+LK+NPN+C
Sbjct:   12 RRAKRFEGHAKILAVGTATPANWVDQTTYPDFYFRITNSEHLLEHKEKFRRICNKSKIRKRHLVLTEELLKKNPNLC 88          
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: DPSS_PINSY (Dihydropinosylvin synthase OS=Pinus sylvestris PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.950e-24
Identity = 48/77 (62.34%), Postives = 67/77 (87.01%), Query Frame = 1
Query:   67 RNAQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNMC 297
            R  QRADG A++LAIGTA P ++ +Q+ YPD+YFRIT +EH TELK+KF+R+C++S IK+R+M+LTEEILK+NP++C
Sbjct:   10 RKLQRADGFASILAIGTANPPNAVDQSTYPDFYFRITGNEHNTELKDKFKRICERSAIKQRYMYLTEEILKKNPDVC 86          
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: CHSB_IPOPU (Chalcone synthase B OS=Ipomoea purpurea GN=CHSB PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.950e-24
Identity = 49/77 (63.64%), Postives = 63/77 (81.82%), Query Frame = 1
Query:   67 RNAQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNMC 297
            R A+R +G A +LAIGTATPA   +Q  YPD+YFRIT S+H+ E KEKFRR+C+KS I+KRH+ LTEE+LK+NPN+C
Sbjct:   14 RRAKRLEGDAKILAIGTATPASWVDQTTYPDFYFRITNSQHLLEHKEKFRRICNKSKIRKRHLVLTEELLKKNPNLC 90          
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: CHSA_IPOCO (Chalcone synthase A (Fragment) OS=Ipomoea cordatotriloba GN=CHSA PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.950e-24
Identity = 50/75 (66.67%), Postives = 63/75 (84.00%), Query Frame = 1
Query:   73 AQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNMC 297
            A+R +G A +LAIGTATP +  +QA YPD+YFRIT SEH+ E KEKFRR+C+KS I+KRH+ LTEE+LKENPN+C
Sbjct:   14 AKRFEGHAKLLAIGTATPTNWVDQATYPDFYFRITNSEHLLEHKEKFRRICNKSKIRKRHLVLTEELLKENPNLC 88          
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: DPS2_PINST (Pinosylvin synthase 2 OS=Pinus strobus GN=STS2 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.015e-23
Identity = 48/81 (59.26%), Postives = 66/81 (81.48%), Query Frame = 1
Query:   55 VQEIRNAQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNMC 297
            ++  R +QRADG A++LAIGTA P +  +Q+ YPDYYFR T +E  T+LK+KF+R+C++S IKKRHM+LTEEILK+NP +C
Sbjct:    9 LEAFRKSQRADGFASILAIGTANPPNVVDQSTYPDYYFRNTNNEDNTDLKDKFKRICERSAIKKRHMYLTEEILKKNPELC 89          
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: CHSC_IPOPU (Chalcone synthase C (Fragment) OS=Ipomoea purpurea GN=CHSC PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.731e-23
Identity = 48/77 (62.34%), Postives = 62/77 (80.52%), Query Frame = 1
Query:   67 RNAQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNMC 297
            R  +R DG A +LAIGTA PA+  +Q  YPD+YFRIT SEH+ E KEKFRR+C+KS I+KRH+ +TEE+LK+NPN+C
Sbjct:   14 RREKRFDGHAKILAIGTAIPANWVDQTTYPDFYFRITNSEHLLEYKEKFRRICNKSKIRKRHLVITEELLKKNPNLC 90          
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: CHSB_IPOCO (Chalcone synthase B (Fragment) OS=Ipomoea cordatotriloba GN=CHSB PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.261e-23
Identity = 48/77 (62.34%), Postives = 63/77 (81.82%), Query Frame = 1
Query:   67 RNAQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNMC 297
            R  +R +G A +LAIGTATPA+  +Q  YPD+YFRIT S+H+ + KEKFRR+C+KS I+KRHM LTEE+LK+NPN+C
Sbjct:   14 RREKRFEGHAKILAIGTATPANWVDQTTYPDFYFRITNSQHLLDHKEKFRRICNKSKIRKRHMILTEELLKKNPNLC 90          
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: CHSA_IPOPU (Chalcone synthase A OS=Ipomoea purpurea GN=CHSA PE=3 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 2.261e-23
Identity = 48/75 (64.00%), Postives = 62/75 (82.67%), Query Frame = 1
Query:   73 AQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNMC 297
            A+R +G A +LAIGTATPA+  +Q  YPD+YFRIT SEH+ E KEKFRR+C+KS I KRH+ +TEE+LK+NPN+C
Sbjct:   16 AKRLEGDAKILAIGTATPANWVDQTTYPDFYFRITNSEHLLEHKEKFRRICNKSKIMKRHLVITEELLKKNPNLC 90          
The following BLAST results are available for this feature:
BLAST of FC876316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
CHSY_EQUAR1.850e-2565.88Chalcone synthase OS=Equisetum arvense GN=CHS PE=2... [more]
DPS1_PINST2.045e-2459.26Pinosylvin synthase 1 OS=Pinus strobus GN=STS1 PE=... [more]
CHSA_IPOPL3.488e-2463.64Chalcone synthase A (Fragment) OS=Ipomoea platensi... [more]
DPSS_PINSY5.950e-2462.34Dihydropinosylvin synthase OS=Pinus sylvestris PE=... [more]
CHSB_IPOPU5.950e-2463.64Chalcone synthase B OS=Ipomoea purpurea GN=CHSB PE... [more]
CHSA_IPOCO5.950e-2466.67Chalcone synthase A (Fragment) OS=Ipomoea cordatot... [more]
DPS2_PINST1.015e-2359.26Pinosylvin synthase 2 OS=Pinus strobus GN=STS2 PE=... [more]
CHSC_IPOPU1.731e-2362.34Chalcone synthase C (Fragment) OS=Ipomoea purpurea... [more]
CHSB_IPOCO2.261e-2362.34Chalcone synthase B (Fragment) OS=Ipomoea cordatot... [more]
CHSA_IPOPU2.261e-2364.00Chalcone synthase A OS=Ipomoea purpurea GN=CHSA PE... [more]

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Properties
Property NameValue
Genbank descriptionC32003C08EF DevOvary1 Citrus clementina cDNA clone C32003C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876316 ID=FC876316; Name=FC876316; organism=Citrus clementina; type=EST; length=298bp
ACCAAGCACGAGCCACCCACATATTCATTAAGGGTTCAACTTGAAATGGC
AACCGTTCAAGAGATCAGAAACGCTCAGCGTGCCGACGGCCCGGCCACCG
TCCTCGCCATCGGTACGGCCACGCCTGCCCACAGTGCCAACCAGGCTGAT
TATCCCGACTATTACTTCAGGATCACAAAGAGCGAGCATATGACGGAGCT
TAAAGAGAAGTTCAGGCGCATGTGTGACAAGTCGATGATTAAGAAGCGCC
ACATGCACTTAACGGAAGAGATTTTGAAGGAAAACCCCAACATGTGCG
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