FC876320

Overview
NameFC876320
Unique NameFC876320
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length514
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10322 contig Ccv1_Contig10322:2..515. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876320 vs. ExPASy Swiss-Prot
Match: G3P_ZYMMO (Glyceraldehyde-3-phosphate dehydrogenase OS=Zymomonas mobilis GN=gap PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.128e-14
Identity = 54/142 (38.03%), Postives = 75/142 (52.82%), Query Frame = 2
Query:   86 VKIGINGFGRIGRLVARVILQRDD--VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK-DAPMFVV-GVNEHE 499
            VK+ INGFGRIGRL AR IL R D  +ELV +ND   + +   ++FK DS HG +        +D  ++   K + V   R+P  +P  + G + V+E TG+FT               V+ISAP+K D    VV GVN  +
Sbjct:    3 VKVAINGFGRIGRLAARAILSRPDSGLELVTIND-LGSVEGNAFLFKRDSAHGTYPGTVTTEGND--MVIDGKKIVVTAERDPANLPHKKLGVDIVMECTGIFTNTEKASAHLTAGAKKVLISAPAKGDVDRTVVYGVNHKD 141          
BLAST of FC876320 vs. ExPASy Swiss-Prot
Match: G3PA_CHOCR (Glyceraldehyde-3-phosphate dehydrogenase, chloroplastic OS=Chondrus crispus GN=GAPA PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.128e-14
Identity = 54/146 (36.99%), Postives = 76/146 (52.05%), Query Frame = 2
Query:   83 KVKIGINGFGRIGRLVARVILQRDD--VELVAVNDPFITTDYMT--YMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPM--FVVGVNEHEY 502
            KV++ INGFGRIGR   R    R D  +E+V +ND   T+   T  ++ KYDS+ G +       +D  T+    K + +   RNP ++PW E   + VVE+TGVF                V+I+AP K   +  FVVGVNE +Y
Sbjct:   78 KVRVAINGFGRIGRNFIRCWAGRSDSNMEVVCIND---TSGVKTASHLLKYDSILGTFDADVSAGED--TISVNGKTIKIVSNRNPLQLPWKEMNIDIVVEATGVFVDAPGAGKHIEAGAKKVLITAPGKGDGIGTFVVGVNEKDY 218          
BLAST of FC876320 vs. ExPASy Swiss-Prot
Match: G3P3_ECOLI (Putative glyceraldehyde-3-phosphate dehydrogenase C OS=Escherichia coli (strain K12) GN=gapC PE=5 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.128e-14
Identity = 46/136 (33.82%), Postives = 74/136 (54.41%), Query Frame = 2
Query:   89 KIGINGFGRIGRLV-ARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNE 493
            K+GINGFGRIGRLV  R++  + ++++VA+ND   +   + Y+ K+DS +G +       +D  +L+   K + V+  +  + IPW   GAE +VE TG +T               V+ISAP+ +    V  VN+
Sbjct:    3 KVGINGFGRIGRLVLGRLLEVKSNIDVVAIND-LTSPKILAYLLKHDSNYGPFPWSVDFTED--SLIVDGKSIAVYAEKEAKNIPWKAKGAEIIVECTGFYTSAEKSQAHLDAGAKKVLISAPAGEMKTIVYNVND 135          
BLAST of FC876320 vs. ExPASy Swiss-Prot
Match: G3P_LACLA (Glyceraldehyde-3-phosphate dehydrogenase OS=Lactococcus lactis subsp. lactis GN=gap PE=3 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 1.474e-14
Identity = 53/138 (38.41%), Postives = 76/138 (55.07%), Query Frame = 2
Query:   86 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVF-TXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEH 496
            VK+GINGFGRIGRL  R I + + VE+  +ND       + ++ KYD+  G++K   ++VK+D   + G K V V   RNPE+I WA++G E V+E+TG F T               V+I+AP  +    VV    H
Sbjct:    3 VKVGINGFGRIGRLALRRIQEVEGVEVAHIND-LTDPAMLAHLLKYDTTQGRFK-GTVEVKEDGFDVNG-KFVKVTAERNPEDIQWADSGVEIVLEATGFFATKEKAEKHLHPGGAKKVLITAPGGNDVKTVVFNTNH 137          
BLAST of FC876320 vs. ExPASy Swiss-Prot
Match: G3P_HALVA (Glyceraldehyde-3-phosphate dehydrogenase OS=Haloarcula vallismortis GN=gap PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.925e-14
Identity = 52/147 (35.37%), Postives = 75/147 (51.02%), Query Frame = 2
Query:   86 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFG--EKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK-DAPM--FVVGVNEHEYKPE 511
            V++G+NGFGRIGR V R  L  DDVE+V +ND    ++ + Y  +YDSV G+ +   +   DD  L     +    +F   +P ++PW +   +   E+TG+F                V+ISAP K D P+   V GVN  EY  E
Sbjct:    6 VRVGLNGFGRIGRNVFRASLHSDDVEIVGINDVMDDSE-IDYFAQYDSVMGELEGASV---DDGVLTVDGTDFEAGIFHETDPTQLPWDDLDVDVAFEATGIFRTKEDASQHLDAGADKVLISAPPKGDEPVKQLVYGVNHDEYDGE 148          
BLAST of FC876320 vs. ExPASy Swiss-Prot
Match: G3P_BORBU (Glyceraldehyde-3-phosphate dehydrogenase OS=Borrelia burgdorferi GN=gap PE=1 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 1.925e-14
Identity = 50/151 (33.11%), Postives = 86/151 (56.95%), Query Frame = 2
Query:   86 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMT--YMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFT-----XXXXXXXXXXXXXXXVIISAPSKD-APMFVVGVNEHEYKPEL 514
            +K+ INGFGRIGR V ++  +R  +++VA+ND    TD  T  ++ KYDS  G + + +++ +D   ++ G + + +   R+P+ +PWA+ G + V+ESTGVF+                    VI++ P+KD     V+GVN+H+   +L
Sbjct:    1 MKLAINGFGRIGRNVFKIAFERG-IDIVAIND---LTDPKTLAHLLKYDSTFGVY-NKKVESRDGAIVVDGRE-IKIIAERDPKNLPWAKLGIDVVIESTGVFSSATSDKGGYLDHVNHAGAKKVILTVPAKDEIKTIVLGVNDHDINSDL 145          
BLAST of FC876320 vs. ExPASy Swiss-Prot
Match: G3PA_PEA (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Pisum sativum GN=GAPA PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 3.283e-14
Identity = 52/143 (36.36%), Postives = 72/143 (50.35%), Query Frame = 2
Query:   83 KVKIGINGFGRIGRLVARVILQRDD--VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK-DAPMFVVGVNEHEY 502
            ++K+ INGFGRIGR   R    R D  ++++A+ND        +++ KYDS  G +      V  D   + G K + V   RNP  +PW E G + V+E TGVF                V+I+AP K D P +VVGVN   Y
Sbjct:   70 QLKVAINGFGRIGRNFLRCWHGRKDSPLDVIAINDTG-GVKQASHLLKYDSTLGIFDADVKPVGTDGISVDG-KVIKVVSDRNPANLPWKELGIDLVIEGTGVFVDREGAGRHITAGAKKVLITAPGKGDIPTYVVGVNADAY 210          
BLAST of FC876320 vs. ExPASy Swiss-Prot
Match: G3P2_STAAW (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus aureus (strain MW2) GN=gapA2 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.288e-14
Identity = 44/139 (31.65%), Postives = 74/139 (53.24%), Query Frame = 2
Query:   92 IGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKD-DKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK--DAPMFVVGVNEHE 499
            I ING GRIGR+V R+ LQ  ++ +VA+N  +   + + ++  YD+ HG+   + LKV+  +  L  G+  + +   RNPE +PW E   +  +++TG F                V+++ PSK     M V GVN+++
Sbjct:    5 IAINGMGRIGRMVLRIALQNKNLNVVAINASY-PPETIAHLINYDTTHGK---YNLKVEPIENGLQVGDHKIKLVADRNPENLPWKELDIDIAIDATGKFNHGDKAIAHIKAGAKKVLLTGPSKGGHVQMVVKGVNDNQ 139          
BLAST of FC876320 vs. ExPASy Swiss-Prot
Match: G3P2_STAAS (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus aureus (strain MSSA476) GN=gapA2 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.288e-14
Identity = 44/139 (31.65%), Postives = 74/139 (53.24%), Query Frame = 2
Query:   92 IGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKD-DKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK--DAPMFVVGVNEHE 499
            I ING GRIGR+V R+ LQ  ++ +VA+N  +   + + ++  YD+ HG+   + LKV+  +  L  G+  + +   RNPE +PW E   +  +++TG F                V+++ PSK     M V GVN+++
Sbjct:    5 IAINGMGRIGRMVLRIALQNKNLNVVAINASY-PPETIAHLINYDTTHGK---YNLKVEPIENGLQVGDHKIKLVADRNPENLPWKELDIDIAIDATGKFNHGDKAIAHIKAGAKKVLLTGPSKGGHVQMVVKGVNDNQ 139          
BLAST of FC876320 vs. ExPASy Swiss-Prot
Match: G3P2_STAAN (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus aureus (strain N315) GN=gapA2 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.288e-14
Identity = 44/139 (31.65%), Postives = 74/139 (53.24%), Query Frame = 2
Query:   92 IGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKD-DKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK--DAPMFVVGVNEHE 499
            I ING GRIGR+V R+ LQ  ++ +VA+N  +   + + ++  YD+ HG+   + LKV+  +  L  G+  + +   RNPE +PW E   +  +++TG F                V+++ PSK     M V GVN+++
Sbjct:    5 IAINGMGRIGRMVLRIALQNKNLNVVAINASY-PPETIAHLINYDTTHGK---YNLKVEPIENGLQVGDHKIKLVADRNPENLPWKELDIDIAIDATGKFNHGDKAIAHIKAGAKKVLLTGPSKGGHVQMVVKGVNDNQ 139          
The following BLAST results are available for this feature:
BLAST of FC876320 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 308
Match NameE-valueIdentityDescription
G3P_ZYMMO1.128e-1438.03Glyceraldehyde-3-phosphate dehydrogenase OS=Zymomo... [more]
G3PA_CHOCR1.128e-1436.99Glyceraldehyde-3-phosphate dehydrogenase, chloropl... [more]
G3P3_ECOLI1.128e-1433.82Putative glyceraldehyde-3-phosphate dehydrogenase ... [more]
G3P_LACLA1.474e-1438.41Glyceraldehyde-3-phosphate dehydrogenase OS=Lactoc... [more]
G3P_HALVA1.925e-1435.37Glyceraldehyde-3-phosphate dehydrogenase OS=Haloar... [more]
G3P_BORBU1.925e-1433.11Glyceraldehyde-3-phosphate dehydrogenase OS=Borrel... [more]
G3PA_PEA3.283e-1436.36Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3P2_STAAW4.288e-1431.65Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]
G3P2_STAAS4.288e-1431.65Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]
G3P2_STAAN4.288e-1431.65Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]

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Properties
Property NameValue
Genbank descriptionC32003D02EF DevOvary1 Citrus clementina cDNA clone C32003D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876320 ID=FC876320; Name=FC876320; organism=Citrus clementina; type=EST; length=514bp
GACCACGACTGCTCTCTCTACTCTCTACAACTTTCTTCACCACTCTTTCA
CCGCTCAATTTCATCTCTCGAGAATCATGGGGAAGGTCAAGATCGGAATC
AACGGATTCGGAAGAATTGGTAGGCTGGTGGCAAGAGTCATCTTGCAGAG
GGACGATGTTGAACTCGTTGCTGTTAATGATCCCTTTATCACAACCGATT
ACATGACATACATGTTTAAGTACGACAGTGTTCACGGTCAATGGAAGCAC
CATGAATTGAAGGTTAAGGACGATAAGACCCTTCTCTTTGGTGAGAAGCC
TGTCACTGTTTTCGGTGTTAGGAACCCAGAGGAGATCCCATGGGCTGAGA
CTGGAGCCGAGTATGTTGTGGAGTCGACTGGAGTCTTTACAGACAAGGAT
AAGGCTGCTGCCCATTTGAAGGGTGGTGCTAAGAAAGTTATCATCTCAGC
CCCCAGCAAGGATGCTCCTATGTTTGTTGTGGGTGTCAATGAGCACGAGT
ACAAACCAGAGCTC
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