FC876325

Overview
NameFC876325
Unique NameFC876325
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11268 contig Ccv1_Contig11268:78..754. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_METVS (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=gpmA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.170e-20
Identity = 48/116 (41.38%), Postives = 79/116 (68.10%), Query Frame = 2
Query:  329 AALILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRISNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYGE 676
            A L+ +RHGES+WN+ N+FTG VDVPL+K GV+EA  AGK + +   D+ Y+S LIRA  T +L M +++     I ++++S + + W +++  +++  + PV  +W+LNER YG+
Sbjct:    2 ANLVFLRHGESIWNKMNIFTGWVDVPLSKGGVKEAKIAGKLLKSYKFDVAYSSELIRALNTLILVMQENKASNF-IKINHDSVKMKEWGKVYGAESINYT-PVYKSWELNERYYGK 115          
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_CYAP7 (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Cyanothece sp. (strain PCC 7424) GN=gpmA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.813e-15
Identity = 45/120 (37.50%), Postives = 73/120 (60.83%), Query Frame = 2
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRI--SNIPVDMIYTSALIRAQMTAMLAMTQHRR---RKVPIIMHNESE-QARTWSQIFSEDTMKQSIPVVTAWQLNERMYGE 676
            LIL+RHG+SLWN  N FTG VD+PL+++G  EA+ A  ++      +D+ +TS LIRA  TA++A+T++ +    K PI  H+  +     W +   +   K+ +P+  +  L+ER YG+
Sbjct:    4 LILIRHGQSLWNAANKFTGWVDIPLSRRGRAEAMIAASKLQEQGYRIDVCFTSLLIRAMETAIIALTEYEQLCGGKTPIFKHDADDLDWHGWDKY--DGDPKEELPIFPSQALDERYYGD 121          
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_METAC (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Methanosarcina acetivorans GN=gpmA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.618e-14
Identity = 46/127 (36.22%), Postives = 69/127 (54.33%), Query Frame = 2
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRISNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNES--------------EQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            LI+VRHGES WN    F G VDVPLT KG++EA+     +  I +D+ +TS LIRAQ T  L ++  +++K+ + +H E+              +  +     +  +T K  IP+ +   LNER YG
Sbjct:    4 LIIVRHGESGWNVDGRFGGWVDVPLTGKGIKEALLCAAELEGIDLDVTFTSKLIRAQETLFLILS--KQKKIGVFVHEEAGTGEDRTEREDGSRKDRKEKRYAYPPNTEKNLIPIHSNEALNERYYG 128          
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: PMG1_YEAST (Phosphoglycerate mutase 1 OS=Saccharomyces cerevisiae GN=GPM1 PE=1 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 4.466e-14
Identity = 49/116 (42.24%), Postives = 63/116 (54.31%), Query Frame = 2
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRISNIPV--DMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYGE 676
            L+LVRHG+S WNEKNLFTG VDV L+ KG +EA  AG+ +    V  D++YTS L RA  TA +A+                +  R W            IPV  +W+LNER YG+
Sbjct:    4 LVLVRHGQSEWNEKNLFTGWVDVKLSAKGQQEAARAGELLKEKKVYPDVLYTSKLSRAIQTANIAL---------------EKADRLW------------IPVNRSWRLNERHYGD 92          
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_PSEA6 (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=gpmA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.466e-14
Identity = 42/115 (36.52%), Postives = 68/115 (59.13%), Query Frame = 2
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRISNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQ-SIPVVTAWQLNERMYGE 676
            L L+RHG+S+WN++N FTG VDV L++ GV+EA  A + +S    D+ +TS L+RAQ T    +  +R+    + +H+   Q   W + F     ++  + +  + QLNER YG+
Sbjct:    4 LTLIRHGQSIWNQQNRFTGWVDVSLSQSGVKEAQRAAQMLSQQRFDLAFTSELLRAQDTLYEILRHNRQCHQYVRIHDTGSQ---WYEHFEASPAEELELRIYVSQQLNERYYGD 115          
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA1_GLOVI (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase 1 OS=Gloeobacter violaceus GN=gpmA1 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.466e-14
Identity = 46/120 (38.33%), Postives = 70/120 (58.33%), Query Frame = 2
Query:  329 AALILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRISNIPVDMIYTSALIRAQMTAMLAMTQHR---RRKVPIIMHN-ESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYGE 676
            A LIL+RHG+SLWN  N FTG VDVPL+++G  EA  A  ++ +  V++ +TS L+RA  TA++ +T+       K+PII H  + E    W     +   +  +P+     L+ER YG+
Sbjct:    2 AHLILIRHGQSLWNAANKFTGWVDVPLSERGRAEATIASCKLRDYRVNVCFTSMLMRAIETAVITLTECDDICGGKIPIIKHEADDENWHGWDNYDGDPAAE--LPIYPTATLDERYYGD 119          
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_MYCLE (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Mycobacterium leprae GN=gpmA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.299e-13
Identity = 50/122 (40.98%), Postives = 65/122 (53.28%), Query Frame = 2
Query:  314 KKSNEAALILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRIS--NIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            ++ N A LIL+RHGES WN +NLFTG VDV LT KG  EA+ +G+ ++  N+  D++YTS L RA  TA LA+                     W            IPV  +W+LNER YG
Sbjct:    2 QQGNTATLILLRHGESDWNARNLFTGWVDVGLTDKGRAEAVRSGELLAEHNLLPDVLYTSLLRRAITTAHLAL-----------------DTADWLW----------IPVRRSWRLNERHYG 96          
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_MYCLB (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Mycobacterium leprae (strain Br4923) GN=gpmA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.299e-13
Identity = 50/122 (40.98%), Postives = 65/122 (53.28%), Query Frame = 2
Query:  314 KKSNEAALILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRIS--NIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            ++ N A LIL+RHGES WN +NLFTG VDV LT KG  EA+ +G+ ++  N+  D++YTS L RA  TA LA+                     W            IPV  +W+LNER YG
Sbjct:    2 QQGNTATLILLRHGESDWNARNLFTGWVDVGLTDKGRAEAVRSGELLAEHNLLPDVLYTSLLRRAITTAHLAL-----------------DTADWLW----------IPVRRSWRLNERHYG 96          
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_METMA (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Methanosarcina mazei GN=gpmA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.697e-13
Identity = 42/119 (35.29%), Postives = 68/119 (57.14%), Query Frame = 2
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRISNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESE-----QARTWSQIFSEDTMKQSIPVVTAWQLNERMYGE 676
            LILVRHGE         +G +D+PL++KG+EEA+E  K + NI +D+ + S L+R Q T  + ++   ++K  +++H ++E     +   W   + E   +  IPV T   LNER YG+
Sbjct:    7 LILVRHGEPGLKPGERLSGWIDIPLSRKGIEEALECAKALENIEIDIAFASDLVRTQETLFIILS--GQKKTGVVVHEKTEDKVPPEKLDWYS-YPEKLGEDLIPVYTTPALNERYYGK 122          
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_FRAAA (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Frankia alni (strain ACN14a) GN=gpmA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.697e-13
Identity = 46/115 (40.00%), Postives = 63/115 (54.78%), Query Frame = 2
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRISNIPV--DMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            L+L+RHGES WN +NLFTG VDV L++KG++EA   G+ ++   V  D+++TS L RA  TA LA+                   RTW            +PV  +W+LNER YG
Sbjct:    4 LVLLRHGESNWNRENLFTGWVDVDLSEKGLKEATRGGELLAEAGVLPDVVHTSLLTRAIRTAWLAL---------------DAAGRTW------------VPVRRSWRLNERHYG 91          
The following BLAST results are available for this feature:
BLAST of FC876325 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
GPMA_METVS4.170e-2041.382,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_CYAP71.813e-1537.502,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_METAC2.618e-1436.222,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
PMG1_YEAST4.466e-1442.24Phosphoglycerate mutase 1 OS=Saccharomyces cerevis... [more]
GPMA_PSEA64.466e-1436.522,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA1_GLOVI4.466e-1438.332,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_MYCLE1.299e-1340.982,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_MYCLB1.299e-1340.982,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_METMA1.697e-1335.292,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_FRAAA1.697e-1340.002,3-bisphosphoglycerate-dependent phosphoglycerate... [more]

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Properties
Property NameValue
Genbank descriptionC32003D07EF DevOvary1 Citrus clementina cDNA clone C32003D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876325 ID=FC876325; Name=FC876325; organism=Citrus clementina; type=EST; length=677bp
ATGAAAAAGATATTTCTGATGCTCATATGCTGCTTGAGTTAACACTGATT
GAATGTCTGCACAGGTATTTCACCAAGCTATGGGGACTCTCCAATCCAAT
CGACTTCTTAACACCTCTGGCACTCACCATGAACTTGGAAATATTAGGGT
GCATTTGATTCCAAAAAGTTTCAAGCTTAATATTGAATTGTCAAGAAACA
GGAATTTTAGATTTGGGAAGAAGAATTTTGGCATAATTCAGGCCACAGCT
TCTCAAACTTCAGTTATTGAATCTGCTTCATCTCCCTCAAATCACGACAC
CAGTGACTCCAAAAAGAAATCAAATGAAGCAGCTTTGATACTGGTTCGAC
ATGGTGAGTCTCTCTGGAATGAAAAGAACCTGTTTACAGGTTGTGTTGAT
GTGCCATTAACCAAGAAGGGTGTAGAAGAGGCAATTGAGGCTGGAAAGAG
AATAAGCAACATACCTGTCGACATGATATATACATCAGCACTAATTCGCG
CGCAGATGACTGCTATGCTCGCCATGACACAGCACCGACGCAGGAAGGTG
CCTATCATTATGCATAATGAAAGTGAACAGGCAAGGACCTGGAGTCAGAT
CTTCAGCGAAGACACCATGAAGCAGTCCATTCCCGTTGTAACAGCTTGGC
AATTGAATGAAAGAATGTATGGGGAAT
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