FC876325

Overview
NameFC876325
Unique NameFC876325
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11268 contig Ccv1_Contig11268:78..754. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: PGAM_DICDI (Probable phosphoglycerate mutase OS=Dictyostelium discoideum GN=gpmA PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.216e-13
Identity = 48/115 (41.74%), Postives = 60/115 (52.17%), Query Frame = 2
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRI--SNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            L+L+RHGES WN++N FTG  DV L++KGV+EA EAGKR+  +    D+ YTS L RA  T                          W  I  E+     IPV   W+LNERMYG
Sbjct:    5 LVLIRHGESTWNKENKFTGWTDVDLSEKGVQEAHEAGKRLLKAGFTFDIAYTSVLKRAIRT-------------------------LW--ILLEELNLYWIPVSRQWRLNERMYG 92          
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_STAS1 (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=gpmA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.216e-13
Identity = 48/115 (41.74%), Postives = 67/115 (58.26%), Query Frame = 2
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRIS--NIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            LIL RHG+S+WN +NLFTG  DV L+++G  EAI +GK++    I +D++YTS L RA  T     T H        + NES      +Q+F        IP++ +W+LNER YG
Sbjct:    4 LILCRHGQSVWNAENLFTGWADVDLSEQGENEAITSGKKLKAQGIEIDIVYTSLLERAIKT-----TYH--------LLNES------NQLF--------IPIIKSWRLNERHYG 91          
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_STAES (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=gpmA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.216e-13
Identity = 47/115 (40.87%), Postives = 61/115 (53.04%), Query Frame = 2
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRI--SNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            LIL RHG+S WN KNLFTG  DV L+K+G+EEA  AGK+I  + I +D+ +TS L RA  T                           +Q     + +Q IPV  +W+LNER YG
Sbjct:    4 LILCRHGQSEWNAKNLFTGWADVKLSKQGIEEAQSAGKKIYDNQIEIDIAFTSLLTRALET---------------------------TQYILAGSDQQWIPVYKSWRLNERHYG 91          
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_STAEQ (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=gpmA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.216e-13
Identity = 47/115 (40.87%), Postives = 61/115 (53.04%), Query Frame = 2
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRI--SNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            LIL RHG+S WN KNLFTG  DV L+K+G+EEA  AGK+I  + I +D+ +TS L RA  T                           +Q     + +Q IPV  +W+LNER YG
Sbjct:    4 LILCRHGQSEWNAKNLFTGWADVKLSKQGIEEAQSAGKKIYGNQIEIDIAFTSLLTRALET---------------------------TQYILAGSDQQWIPVYKSWRLNERHYG 91          
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_MYCTU (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Mycobacterium tuberculosis GN=gpmA PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.781e-13
Identity = 49/120 (40.83%), Postives = 64/120 (53.33%), Query Frame = 2
Query:  320 SNEAALILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRIS--NIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            +N  +L+L+RHGES WN  NLFTG VDV LT KG  EA+ +G+ I+  ++  D++YTS L RA  TA LA+                   R W            IPV  +W+LNER YG
Sbjct:    2 ANTGSLVLLRHGESDWNALNLFTGWVDVGLTDKGQAEAVRSGELIAEHDLLPDVLYTSLLRRAITTAHLAL---------------DSADRLW------------IPVRRSWRLNERHYG 94          
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_MYCTA (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=gpmA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.781e-13
Identity = 49/120 (40.83%), Postives = 64/120 (53.33%), Query Frame = 2
Query:  320 SNEAALILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRIS--NIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            +N  +L+L+RHGES WN  NLFTG VDV LT KG  EA+ +G+ I+  ++  D++YTS L RA  TA LA+                   R W            IPV  +W+LNER YG
Sbjct:    2 ANTGSLVLLRHGESDWNALNLFTGWVDVGLTDKGQAEAVRSGELIAEHDLLPDVLYTSLLRRAITTAHLAL---------------DSADRLW------------IPVRRSWRLNERHYG 94          
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_MYCBT (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=gpmA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.781e-13
Identity = 49/120 (40.83%), Postives = 64/120 (53.33%), Query Frame = 2
Query:  320 SNEAALILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRIS--NIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            +N  +L+L+RHGES WN  NLFTG VDV LT KG  EA+ +G+ I+  ++  D++YTS L RA  TA LA+                   R W            IPV  +W+LNER YG
Sbjct:    2 ANTGSLVLLRHGESDWNALNLFTGWVDVGLTDKGQAEAVRSGELIAEHDLLPDVLYTSLLRRAITTAHLAL---------------DSADRLW------------IPVRRSWRLNERHYG 94          
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_MYCBP (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=gpmA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.781e-13
Identity = 49/120 (40.83%), Postives = 64/120 (53.33%), Query Frame = 2
Query:  320 SNEAALILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRIS--NIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            +N  +L+L+RHGES WN  NLFTG VDV LT KG  EA+ +G+ I+  ++  D++YTS L RA  TA LA+                   R W            IPV  +W+LNER YG
Sbjct:    2 ANTGSLVLLRHGESDWNALNLFTGWVDVGLTDKGQAEAVRSGELIAEHDLLPDVLYTSLLRRAITTAHLAL---------------DSADRLW------------IPVRRSWRLNERHYG 94          
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_MYCBO (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Mycobacterium bovis GN=gpmA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.781e-13
Identity = 49/120 (40.83%), Postives = 64/120 (53.33%), Query Frame = 2
Query:  320 SNEAALILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRIS--NIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            +N  +L+L+RHGES WN  NLFTG VDV LT KG  EA+ +G+ I+  ++  D++YTS L RA  TA LA+                   R W            IPV  +W+LNER YG
Sbjct:    2 ANTGSLVLLRHGESDWNALNLFTGWVDVGLTDKGQAEAVRSGELIAEHDLLPDVLYTSLLRRAITTAHLAL---------------DSADRLW------------IPVRRSWRLNERHYG 94          
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_VARPS (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Variovorax paradoxus (strain S110) GN=gpmA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.938e-13
Identity = 45/115 (39.13%), Postives = 59/115 (51.30%), Query Frame = 2
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGK--RISNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            L+L+RHGES WN +N FTG  DV LT+ G+E+A +AG+  +      D+ YTS L RA  T               + H   E  RTW            +PVV +W+LNER YG
Sbjct:    4 LVLIRHGESTWNLENRFTGWTDVDLTETGIEQAKQAGRLLKAEGYDFDVAYTSVLKRATRT---------------LWHTLDELDRTW------------LPVVHSWRLNERHYG 91          
The following BLAST results are available for this feature:
BLAST of FC876325 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
PGAM_DICDI2.216e-1341.74Probable phosphoglycerate mutase OS=Dictyostelium ... [more]
GPMA_STAS12.216e-1341.742,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_STAES2.216e-1340.872,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_STAEQ2.216e-1340.872,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_MYCTU3.781e-1340.832,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_MYCTA3.781e-1340.832,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_MYCBT3.781e-1340.832,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_MYCBP3.781e-1340.832,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_MYCBO3.781e-1340.832,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_VARPS4.938e-1339.132,3-bisphosphoglycerate-dependent phosphoglycerate... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32003D07EF DevOvary1 Citrus clementina cDNA clone C32003D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876325 ID=FC876325; Name=FC876325; organism=Citrus clementina; type=EST; length=677bp
ATGAAAAAGATATTTCTGATGCTCATATGCTGCTTGAGTTAACACTGATT
GAATGTCTGCACAGGTATTTCACCAAGCTATGGGGACTCTCCAATCCAAT
CGACTTCTTAACACCTCTGGCACTCACCATGAACTTGGAAATATTAGGGT
GCATTTGATTCCAAAAAGTTTCAAGCTTAATATTGAATTGTCAAGAAACA
GGAATTTTAGATTTGGGAAGAAGAATTTTGGCATAATTCAGGCCACAGCT
TCTCAAACTTCAGTTATTGAATCTGCTTCATCTCCCTCAAATCACGACAC
CAGTGACTCCAAAAAGAAATCAAATGAAGCAGCTTTGATACTGGTTCGAC
ATGGTGAGTCTCTCTGGAATGAAAAGAACCTGTTTACAGGTTGTGTTGAT
GTGCCATTAACCAAGAAGGGTGTAGAAGAGGCAATTGAGGCTGGAAAGAG
AATAAGCAACATACCTGTCGACATGATATATACATCAGCACTAATTCGCG
CGCAGATGACTGCTATGCTCGCCATGACACAGCACCGACGCAGGAAGGTG
CCTATCATTATGCATAATGAAAGTGAACAGGCAAGGACCTGGAGTCAGAT
CTTCAGCGAAGACACCATGAAGCAGTCCATTCCCGTTGTAACAGCTTGGC
AATTGAATGAAAGAATGTATGGGGAAT
back to top