FC876325

Overview
NameFC876325
Unique NameFC876325
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11268 contig Ccv1_Contig11268:78..754. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_STAAW (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Staphylococcus aureus (strain MW2) GN=gpmA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.938e-13
Identity = 44/115 (38.26%), Postives = 62/115 (53.91%), Query Frame = 2 
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRI--SNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            LIL RHG+S WN KNLFTG  DV L+++G+ EA  AG+++  +NI +D+ +TS L RA  T    +T+ ++                           Q IPV  +W+LNER YG
Sbjct:    4 LILCRHGQSEWNAKNLFTGWEDVNLSEQGINEATRAGEKVRENNIAIDVAFTSLLTRALDTTHYILTESKQ---------------------------QWIPVYKSWRLNERHYG 91
[Close]
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_STAAT (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=gpmA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.938e-13
Identity = 44/115 (38.26%), Postives = 62/115 (53.91%), Query Frame = 2 
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRI--SNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            LIL RHG+S WN KNLFTG  DV L+++G+ EA  AG+++  +NI +D+ +TS L RA  T    +T+ ++                           Q IPV  +W+LNER YG
Sbjct:    4 LILCRHGQSEWNAKNLFTGWEDVNLSEQGINEATRAGEKVRENNIAIDVAFTSLLTRALDTTHYILTESKQ---------------------------QWIPVYKSWRLNERHYG 91
[Close]
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_STAAS (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Staphylococcus aureus (strain MSSA476) GN=gpmA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.938e-13
Identity = 44/115 (38.26%), Postives = 62/115 (53.91%), Query Frame = 2 
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRI--SNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            LIL RHG+S WN KNLFTG  DV L+++G+ EA  AG+++  +NI +D+ +TS L RA  T    +T+ ++                           Q IPV  +W+LNER YG
Sbjct:    4 LILCRHGQSEWNAKNLFTGWEDVNLSEQGINEATRAGEKVRENNIAIDVAFTSLLTRALDTTHYILTESKQ---------------------------QWIPVYKSWRLNERHYG 91
[Close]
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_STAAR (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Staphylococcus aureus (strain MRSA252) GN=gpmA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.938e-13
Identity = 44/115 (38.26%), Postives = 62/115 (53.91%), Query Frame = 2 
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRI--SNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            LIL RHG+S WN KNLFTG  DV L+++G+ EA  AG+++  +NI +D+ +TS L RA  T    +T+ ++                           Q IPV  +W+LNER YG
Sbjct:    4 LILCRHGQSEWNAKNLFTGWEDVNLSEQGINEATRAGEKVRENNIDIDVAFTSLLTRALDTTHYILTESKQ---------------------------QWIPVYKSWRLNERHYG 91
[Close]
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_STAAN (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Staphylococcus aureus (strain N315) GN=gpmA PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.938e-13
Identity = 44/115 (38.26%), Postives = 62/115 (53.91%), Query Frame = 2 
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRI--SNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            LIL RHG+S WN KNLFTG  DV L+++G+ EA  AG+++  +NI +D+ +TS L RA  T    +T+ ++                           Q IPV  +W+LNER YG
Sbjct:    4 LILCRHGQSEWNAKNLFTGWEDVNLSEQGINEATRAGEKVRENNIAIDVAFTSLLTRALDTTHYILTESKQ---------------------------QWIPVYKSWRLNERHYG 91
[Close]
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_STAAM (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=gpmA PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.938e-13
Identity = 44/115 (38.26%), Postives = 62/115 (53.91%), Query Frame = 2 
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRI--SNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            LIL RHG+S WN KNLFTG  DV L+++G+ EA  AG+++  +NI +D+ +TS L RA  T    +T+ ++                           Q IPV  +W+LNER YG
Sbjct:    4 LILCRHGQSEWNAKNLFTGWEDVNLSEQGINEATRAGEKVRENNIAIDVAFTSLLTRALDTTHYILTESKQ---------------------------QWIPVYKSWRLNERHYG 91
[Close]
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_STAAE (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Staphylococcus aureus (strain Newman) GN=gpmA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.938e-13
Identity = 44/115 (38.26%), Postives = 62/115 (53.91%), Query Frame = 2 
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRI--SNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            LIL RHG+S WN KNLFTG  DV L+++G+ EA  AG+++  +NI +D+ +TS L RA  T    +T+ ++                           Q IPV  +W+LNER YG
Sbjct:    4 LILCRHGQSEWNAKNLFTGWEDVNLSEQGINEATRAGEKVRENNIAIDVAFTSLLTRALDTTHYILTESKQ---------------------------QWIPVYKSWRLNERHYG 91
[Close]
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_STAAC (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Staphylococcus aureus (strain COL) GN=gpmA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.938e-13
Identity = 44/115 (38.26%), Postives = 62/115 (53.91%), Query Frame = 2 
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRI--SNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            LIL RHG+S WN KNLFTG  DV L+++G+ EA  AG+++  +NI +D+ +TS L RA  T    +T+ ++                           Q IPV  +W+LNER YG
Sbjct:    4 LILCRHGQSEWNAKNLFTGWEDVNLSEQGINEATRAGEKVRENNIAIDVAFTSLLTRALDTTHYILTESKQ---------------------------QWIPVYKSWRLNERHYG 91
[Close]
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_STAAB (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=gpmA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.938e-13
Identity = 44/115 (38.26%), Postives = 62/115 (53.91%), Query Frame = 2 
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRI--SNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            LIL RHG+S WN KNLFTG  DV L+++G+ EA  AG+++  +NI +D+ +TS L RA  T    +T+ ++                           Q IPV  +W+LNER YG
Sbjct:    4 LILCRHGQSEWNAKNLFTGWEDVNLSEQGINEATRAGEKVRENNIAIDVAFTSLLTRALDTTHYILTESKQ---------------------------QWIPVYKSWRLNERHYG 91
[Close]
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_STAA9 (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Staphylococcus aureus (strain JH9) GN=gpmA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.938e-13
Identity = 44/115 (38.26%), Postives = 62/115 (53.91%), Query Frame = 2 
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRI--SNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            LIL RHG+S WN KNLFTG  DV L+++G+ EA  AG+++  +NI +D+ +TS L RA  T    +T+ ++                           Q IPV  +W+LNER YG
Sbjct:    4 LILCRHGQSEWNAKNLFTGWEDVNLSEQGINEATRAGEKVRENNIAIDVAFTSLLTRALDTTHYILTESKQ---------------------------QWIPVYKSWRLNERHYG 91
The following BLAST results are available for this feature:
BLAST of FC876325 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
GPMA_STAAW4.938e-1338.262,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_STAAT4.938e-1338.262,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_STAAS4.938e-1338.262,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_STAAR4.938e-1338.262,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_STAAN4.938e-1338.262,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_STAAM4.938e-1338.262,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_STAAE4.938e-1338.262,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_STAAC4.938e-1338.262,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_STAAB4.938e-1338.262,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_STAA94.938e-1338.262,3-bisphosphoglycerate-dependent phosphoglycerate... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32003D07EF DevOvary1 Citrus clementina cDNA clone C32003D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876325 ID=FC876325; Name=FC876325; organism=Citrus clementina; type=EST; length=677bp
ATGAAAAAGATATTTCTGATGCTCATATGCTGCTTGAGTTAACACTGATT
GAATGTCTGCACAGGTATTTCACCAAGCTATGGGGACTCTCCAATCCAAT
CGACTTCTTAACACCTCTGGCACTCACCATGAACTTGGAAATATTAGGGT
GCATTTGATTCCAAAAAGTTTCAAGCTTAATATTGAATTGTCAAGAAACA
GGAATTTTAGATTTGGGAAGAAGAATTTTGGCATAATTCAGGCCACAGCT
TCTCAAACTTCAGTTATTGAATCTGCTTCATCTCCCTCAAATCACGACAC
CAGTGACTCCAAAAAGAAATCAAATGAAGCAGCTTTGATACTGGTTCGAC
ATGGTGAGTCTCTCTGGAATGAAAAGAACCTGTTTACAGGTTGTGTTGAT
GTGCCATTAACCAAGAAGGGTGTAGAAGAGGCAATTGAGGCTGGAAAGAG
AATAAGCAACATACCTGTCGACATGATATATACATCAGCACTAATTCGCG
CGCAGATGACTGCTATGCTCGCCATGACACAGCACCGACGCAGGAAGGTG
CCTATCATTATGCATAATGAAAGTGAACAGGCAAGGACCTGGAGTCAGAT
CTTCAGCGAAGACACCATGAAGCAGTCCATTCCCGTTGTAACAGCTTGGC
AATTGAATGAAAGAATGTATGGGGAAT
back to top