FC876325

Overview
NameFC876325
Unique NameFC876325
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_STAA8 (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Staphylococcus aureus (strain NCTC 8325) GN=gpmA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.938e-13
Identity = 44/115 (38.26%), Postives = 62/115 (53.91%), Query Frame = 2 
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRI--SNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            LIL RHG+S WN KNLFTG  DV L+++G+ EA  AG+++  +NI +D+ +TS L RA  T    +T+ ++                           Q IPV  +W+LNER YG
Sbjct:    4 LILCRHGQSEWNAKNLFTGWEDVNLSEQGINEATRAGEKVRENNIAIDVAFTSLLTRALDTTHYILTESKQ---------------------------QWIPVYKSWRLNERHYG 91
[Close]
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_STAA3 (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Staphylococcus aureus (strain USA300) GN=gpmA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.938e-13
Identity = 44/115 (38.26%), Postives = 62/115 (53.91%), Query Frame = 2 
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRI--SNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            LIL RHG+S WN KNLFTG  DV L+++G+ EA  AG+++  +NI +D+ +TS L RA  T    +T+ ++                           Q IPV  +W+LNER YG
Sbjct:    4 LILCRHGQSEWNAKNLFTGWEDVNLSEQGINEATRAGEKVRENNIAIDVAFTSLLTRALDTTHYILTESKQ---------------------------QWIPVYKSWRLNERHYG 91
[Close]
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_STAA2 (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Staphylococcus aureus (strain JH1) GN=gpmA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.938e-13
Identity = 44/115 (38.26%), Postives = 62/115 (53.91%), Query Frame = 2 
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRI--SNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            LIL RHG+S WN KNLFTG  DV L+++G+ EA  AG+++  +NI +D+ +TS L RA  T    +T+ ++                           Q IPV  +W+LNER YG
Sbjct:    4 LILCRHGQSEWNAKNLFTGWEDVNLSEQGINEATRAGEKVRENNIAIDVAFTSLLTRALDTTHYILTESKQ---------------------------QWIPVYKSWRLNERHYG 91
[Close]
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_STAA1 (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=gpmA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.938e-13
Identity = 44/115 (38.26%), Postives = 62/115 (53.91%), Query Frame = 2 
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRI--SNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            LIL RHG+S WN KNLFTG  DV L+++G+ EA  AG+++  +NI +D+ +TS L RA  T    +T+ ++                           Q IPV  +W+LNER YG
Sbjct:    4 LILCRHGQSEWNAKNLFTGWEDVNLSEQGINEATRAGEKVRENNIAIDVAFTSLLTRALDTTHYILTESKQ---------------------------QWIPVYKSWRLNERHYG 91
[Close]
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_NOCFA (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Nocardia farcinica GN=gpmA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.449e-13
Identity = 50/116 (43.10%), Postives = 60/116 (51.72%), Query Frame = 2 
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRIS--NIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYGE 676
            L+L+RHGES WN  NLFTG VDV LT KGV E   AG+ ++   I  D++YTS L RA  TA +A+                   R W            IPVV  W+LNER YGE
Sbjct:    5 LVLLRHGESEWNALNLFTGWVDVHLTDKGVAEGKRAGELLAEHGILPDIVYTSLLRRAISTANIAL---------------DAADRHW------------IPVVRDWRLNERHYGE 93
[Close]
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_LEIXX (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Leifsonia xyli subsp. xyli GN=gpmA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.449e-13
Identity = 49/116 (42.24%), Postives = 62/116 (53.45%), Query Frame = 2 
Query:  332 ALILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRI--SNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            ALIL+RHG S WN +NLFTG VDV L+++GV EA  AG+ +  S +  D++YTS L RA  TA  A+                   R W            IPVV +W+LNER YG
Sbjct:    6 ALILLRHGNSEWNRQNLFTGWVDVRLSEQGVAEAKRAGELLAESGLVPDILYTSLLTRAIQTANHAL---------------DAADRLW------------IPVVRSWRLNERHYG 94
[Close]
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_CLAMS (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) GN=gpmA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.423e-13
Identity = 47/115 (40.87%), Postives = 62/115 (53.91%), Query Frame = 2 
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRI--SNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            L+L+RHG S WN+KNLFTG VDV L+++GV E   AG+ +  S I  D+++TS LIRA  TA +A+                   R+W            IPV   W+LNER YG
Sbjct:    7 LVLLRHGNSDWNQKNLFTGWVDVELSEQGVAEGQRAGELLAESGILPDVLHTSVLIRAIDTANIAL---------------KRAGRSW------------IPVQRTWRLNERHYG 94
[Close]
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_CLAM3 (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=gpmA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.423e-13
Identity = 47/115 (40.87%), Postives = 62/115 (53.91%), Query Frame = 2 
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRI--SNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            L+L+RHG S WN+KNLFTG VDV L+++GV E   AG+ +  S I  D+++TS LIRA  TA +A+                   R+W            IPV   W+LNER YG
Sbjct:    7 LVLLRHGNSDWNQKNLFTGWVDVELSEQGVAEGQRAGELLAESGILPDVLHTSVLIRAIDTANIAL---------------KRAGRSW------------IPVQRTWRLNERHYG 94
[Close]
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_STRCO (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Streptomyces coelicolor GN=gpmA PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 1.100e-12
Identity = 46/115 (40.00%), Postives = 59/115 (51.30%), Query Frame = 2 
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRISNIPV--DMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            LIL+RHGES WNEKNLFTG VDV LT KG +EA   G+ + +  +  D+++TS   RA  TA LA+    R  +P+  H                           W+LNER YG
Sbjct:    8 LILLRHGESEWNEKNLFTGWVDVNLTPKGEKEATRGGELLKDAGLLPDVVHTSVQKRAIRTAQLALEAADRHWIPVHRH---------------------------WRLNERHYG 95
[Close]
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_MYCUA (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Mycobacterium ulcerans (strain Agy99) GN=gpmA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.100e-12
Identity = 47/115 (40.87%), Postives = 63/115 (54.78%), Query Frame = 2 
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRIS--NIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            L+L+RHGES WN +NLFTG VDV LT+KG  EA+ +G+ ++  ++  D++YTS L RA  TA LA+                   R W            IPV  +W+LNER YG
Sbjct:    7 LVLLRHGESDWNARNLFTGWVDVGLTEKGRAEAVRSGELLAEQDLLPDVLYTSLLRRAITTAHLAL---------------DSADRLW------------IPVRRSWRLNERHYG 94
The following BLAST results are available for this feature:
BLAST of FC876325 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
GPMA_STAA84.938e-1338.262,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_STAA34.938e-1338.262,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_STAA24.938e-1338.262,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_STAA14.938e-1338.262,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_NOCFA6.449e-1343.102,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_LEIXX6.449e-1342.242,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_CLAMS8.423e-1340.872,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_CLAM38.423e-1340.872,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_STRCO1.100e-1240.002,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_MYCUA1.100e-1240.872,3-bisphosphoglycerate-dependent phosphoglycerate... [more]

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Properties
Property NameValue
Genbank descriptionC32003D07EF DevOvary1 Citrus clementina cDNA clone C32003D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876325 ID=FC876325; Name=FC876325; organism=Citrus clementina; type=EST; length=677bp
ATGAAAAAGATATTTCTGATGCTCATATGCTGCTTGAGTTAACACTGATT
GAATGTCTGCACAGGTATTTCACCAAGCTATGGGGACTCTCCAATCCAAT
CGACTTCTTAACACCTCTGGCACTCACCATGAACTTGGAAATATTAGGGT
GCATTTGATTCCAAAAAGTTTCAAGCTTAATATTGAATTGTCAAGAAACA
GGAATTTTAGATTTGGGAAGAAGAATTTTGGCATAATTCAGGCCACAGCT
TCTCAAACTTCAGTTATTGAATCTGCTTCATCTCCCTCAAATCACGACAC
CAGTGACTCCAAAAAGAAATCAAATGAAGCAGCTTTGATACTGGTTCGAC
ATGGTGAGTCTCTCTGGAATGAAAAGAACCTGTTTACAGGTTGTGTTGAT
GTGCCATTAACCAAGAAGGGTGTAGAAGAGGCAATTGAGGCTGGAAAGAG
AATAAGCAACATACCTGTCGACATGATATATACATCAGCACTAATTCGCG
CGCAGATGACTGCTATGCTCGCCATGACACAGCACCGACGCAGGAAGGTG
CCTATCATTATGCATAATGAAAGTGAACAGGCAAGGACCTGGAGTCAGAT
CTTCAGCGAAGACACCATGAAGCAGTCCATTCCCGTTGTAACAGCTTGGC
AATTGAATGAAAGAATGTATGGGGAAT
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