FC876325

Overview
NameFC876325
Unique NameFC876325
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11268 contig Ccv1_Contig11268:78..754. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_STRTD (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=gpmA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.201e-12
Identity = 47/115 (40.87%), Postives = 60/115 (52.17%), Query Frame = 2
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRI--SNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            L+  RHGES WN+ NLFTG  DV L++KG ++AI+AGK I  + I  D  YTS L RA  T  LA+               S+Q   W            +PV  +W+LNER YG
Sbjct:    4 LVFARHGESEWNKANLFTGWADVDLSEKGTQQAIDAGKLIKEAGIEFDKAYTSVLKRAIKTTNLAL-------------EASDQ--LW------------VPVEKSWRLNERHYG 91          
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_STRT2 (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=gpmA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.201e-12
Identity = 47/115 (40.87%), Postives = 60/115 (52.17%), Query Frame = 2
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRI--SNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            L+  RHGES WN+ NLFTG  DV L++KG ++AI+AGK I  + I  D  YTS L RA  T  LA+               S+Q   W            +PV  +W+LNER YG
Sbjct:    4 LVFARHGESEWNKANLFTGWADVDLSEKGTQQAIDAGKLIKEAGIEFDKAYTSVLKRAIKTTNLAL-------------EASDQ--LW------------VPVEKSWRLNERHYG 91          
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_STRT1 (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Streptococcus thermophilus (strain CNRZ 1066) GN=gpmA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.201e-12
Identity = 47/115 (40.87%), Postives = 60/115 (52.17%), Query Frame = 2
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRI--SNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            L+  RHGES WN+ NLFTG  DV L++KG ++AI+AGK I  + I  D  YTS L RA  T  LA+               S+Q   W            +PV  +W+LNER YG
Sbjct:    4 LVFARHGESEWNKANLFTGWADVDLSEKGTQQAIDAGKLIKEAGIEFDKAYTSVLKRAIKTTNLAL-------------EASDQ--LW------------VPVEKSWRLNERHYG 91          
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_RHOSR (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Rhodococcus sp. (strain RHA1) GN=gpmA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.201e-12
Identity = 47/115 (40.87%), Postives = 59/115 (51.30%), Query Frame = 2
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRI--SNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            L+L+RHGES WN  NLFTG VDV LT KG+ E   AG+ +   N+  D++YTS L RA  TA +A+                   R W            IPV+  W+LNER YG
Sbjct:    9 LVLLRHGESEWNALNLFTGWVDVHLTDKGIAEGKRAGELLLEHNLLPDVLYTSLLRRAISTANIAL---------------DTADRHW------------IPVIRDWRLNERHYG 96          
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_RHOOB (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Rhodococcus opacus (strain B4) GN=gpmA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.201e-12
Identity = 47/115 (40.87%), Postives = 59/115 (51.30%), Query Frame = 2
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRI--SNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            L+L+RHGES WN  NLFTG VDV LT KG+ E   AG+ +   N+  D++YTS L RA  TA +A+                   R W            IPV+  W+LNER YG
Sbjct:    9 LVLLRHGESEWNALNLFTGWVDVHLTDKGIAEGKRAGELLLEHNLLPDVLYTSLLRRAISTANIAL---------------DTADRHW------------IPVIRDWRLNERHYG 96          
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_MYCPA (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Mycobacterium paratuberculosis GN=gpmA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.201e-12
Identity = 48/117 (41.03%), Postives = 60/117 (51.28%), Query Frame = 2
Query:  329 AALILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRISN--IPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            A L+L+RHGES WN  NLFTG VDV LT KG  EA+ +G+ ++   +  D +YTS L RA  TA LA+                   R W            IPV  +W+LNER YG
Sbjct:    5 ATLVLLRHGESEWNSLNLFTGWVDVGLTDKGRAEAVRSGELLAEQGLLPDALYTSLLRRAITTAHLAL---------------DAADRLW------------IPVRRSWRLNERHYG 94          
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_LACLA (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Lactococcus lactis subsp. lactis GN=gpmA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.201e-12
Identity = 48/115 (41.74%), Postives = 60/115 (52.17%), Query Frame = 2
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRI--SNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            L+  RHGES WN  NLFTG  DV L++ G ++AIEAGK I  + I  D+ YTS L RA  T  LA+               S+Q   W            +PVV +W+LNER YG
Sbjct:    4 LVFARHGESEWNLANLFTGWADVDLSENGTKQAIEAGKLIKEAGIEFDIAYTSVLKRAIKTTNLAL-------------EYSDQ--LW------------VPVVKSWRLNERHYG 91          
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_BARQU (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Bartonella quintana GN=gpmA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.201e-12
Identity = 39/80 (48.75%), Postives = 53/80 (66.25%), Query Frame = 2
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRI--SNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHN 568
            L+L+RHG+S WN KNLFTG  D  LT+KG  EAI AGK +  + +  D+ YTSAL RAQ TA   + Q  +  +P+I ++
Sbjct:    5 LVLIRHGQSEWNIKNLFTGWKDPGLTEKGHAEAITAGKNLKAAGLKFDIAYTSALQRAQKTAQHILEQMGQSDLPLIKNS 84          
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_STRGC (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=gpmA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.180e-12
Identity = 45/115 (39.13%), Postives = 58/115 (50.43%), Query Frame = 2
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRI--SNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            L+  RHGES WN+ NLFTG  DV L++KG ++AI+AGK I  + I  D  YTS L RA  T  LA+                           E   +  +PV  +W+LNER YG
Sbjct:    4 LVFARHGESEWNKANLFTGWADVDLSEKGTQQAIDAGKLIKEAGIEFDQAYTSVLKRAIKTTNLAL---------------------------EAADQLWVPVEKSWRLNERHYG 91          
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_NOCSJ (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Nocardioides sp. (strain BAA-499 / JS614) GN=gpmA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.180e-12
Identity = 48/115 (41.74%), Postives = 60/115 (52.17%), Query Frame = 2
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGK--RISNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            LIL+RHGES WN KNLFTG VDV LT+KG  EA+  G+  R + +  D+++TS   RA  TA LA+                   R W            IPV  +W+LNER YG
Sbjct:    5 LILLRHGESEWNAKNLFTGWVDVNLTEKGRAEAVRGGELMREAGVLPDVVHTSVQRRAINTACLAL---------------DAADRHW------------IPVRRSWRLNERHYG 92          
The following BLAST results are available for this feature:
BLAST of FC876325 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
GPMA_STRTD3.201e-1240.872,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_STRT23.201e-1240.872,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_STRT13.201e-1240.872,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_RHOSR3.201e-1240.872,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_RHOOB3.201e-1240.872,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_MYCPA3.201e-1241.032,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_LACLA3.201e-1241.742,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_BARQU3.201e-1248.752,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_STRGC4.180e-1239.132,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_NOCSJ4.180e-1241.742,3-bisphosphoglycerate-dependent phosphoglycerate... [more]

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Properties
Property NameValue
Genbank descriptionC32003D07EF DevOvary1 Citrus clementina cDNA clone C32003D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876325 ID=FC876325; Name=FC876325; organism=Citrus clementina; type=EST; length=677bp
ATGAAAAAGATATTTCTGATGCTCATATGCTGCTTGAGTTAACACTGATT
GAATGTCTGCACAGGTATTTCACCAAGCTATGGGGACTCTCCAATCCAAT
CGACTTCTTAACACCTCTGGCACTCACCATGAACTTGGAAATATTAGGGT
GCATTTGATTCCAAAAAGTTTCAAGCTTAATATTGAATTGTCAAGAAACA
GGAATTTTAGATTTGGGAAGAAGAATTTTGGCATAATTCAGGCCACAGCT
TCTCAAACTTCAGTTATTGAATCTGCTTCATCTCCCTCAAATCACGACAC
CAGTGACTCCAAAAAGAAATCAAATGAAGCAGCTTTGATACTGGTTCGAC
ATGGTGAGTCTCTCTGGAATGAAAAGAACCTGTTTACAGGTTGTGTTGAT
GTGCCATTAACCAAGAAGGGTGTAGAAGAGGCAATTGAGGCTGGAAAGAG
AATAAGCAACATACCTGTCGACATGATATATACATCAGCACTAATTCGCG
CGCAGATGACTGCTATGCTCGCCATGACACAGCACCGACGCAGGAAGGTG
CCTATCATTATGCATAATGAAAGTGAACAGGCAAGGACCTGGAGTCAGAT
CTTCAGCGAAGACACCATGAAGCAGTCCATTCCCGTTGTAACAGCTTGGC
AATTGAATGAAAGAATGTATGGGGAAT
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