FC876325

Overview
NameFC876325
Unique NameFC876325
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11268 contig Ccv1_Contig11268:78..754. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_BRAHW (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Brachyspira hyodysenteriae (strain ATCC 49526 / WA1) GN=gpmA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.180e-12
Identity = 44/115 (38.26%), Postives = 56/115 (48.70%), Query Frame = 2
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRI--SNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            ++L+RHGES+WN++NLFTG  DV L++KG+EEA   G  +  +    D  YTS L RA  T  L +                E    W            IPV   WQLNER YG
Sbjct:    4 VVLIRHGESVWNKENLFTGWADVTLSEKGIEEAKAGGAELKKAGFTFDKAYTSTLTRAIKTLNLVL---------------EEMGLLW------------IPVDKCWQLNERHYG 91          
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_BARHE (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Bartonella henselae GN=gpmA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.180e-12
Identity = 39/80 (48.75%), Postives = 52/80 (65.00%), Query Frame = 2
Query:  326 EAALILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRI--SNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPII 559
            E  L+L+RHG+S WN KNLFTG  D  LT+KG  EAI AGK++  + +  D+ YTSAL RAQ TA   + Q  +  + +I
Sbjct:    2 ERTLVLIRHGQSEWNLKNLFTGWKDPGLTEKGRTEAIAAGKKLKETGLKFDIAYTSALQRAQKTAQNILEQMEQSDLELI 81          
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA2_NITEU (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase 2 OS=Nitrosomonas europaea GN=gpmA2 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.180e-12
Identity = 44/115 (38.26%), Postives = 60/115 (52.17%), Query Frame = 2
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGK--RISNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            L+L+RHGES+WN++N FTG  DV LT KG++EA EAG+  R +    D+ YTS L RA  T  +A+                E  + W+            P+   W+LNER YG
Sbjct:    4 LVLLRHGESIWNQENRFTGWTDVDLTPKGLKEAEEAGRLLRENGFSFDIAYTSLLKRAIRTLWIAL---------------DEMDQMWT------------PIELNWRLNERHYG 91          
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_STRU0 (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=gpmA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.459e-12
Identity = 46/115 (40.00%), Postives = 61/115 (53.04%), Query Frame = 2
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRI--SNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            L+  RHGES WN+ NLFTG  DV L++KG ++AI+AGK I  + I  D+ +TS L RA  T  LA+               S+Q   W            +PV  +W+LNER YG
Sbjct:    4 LVFARHGESEWNKANLFTGWADVDLSEKGTQQAIDAGKLIKEAGIEFDLAFTSVLKRAIKTTNLAL-------------EYSDQ--LW------------VPVEKSWRLNERHYG 91          
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_STRS7 (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Streptococcus equi subsp. zooepidemicus (strain H70) GN=gpmA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.459e-12
Identity = 46/115 (40.00%), Postives = 61/115 (53.04%), Query Frame = 2
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRI--SNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            L+  RHGES WN+ NLFTG  DV L++KG ++AI+AGK I  + I  D+ +TS L RA  T  LA+               S+Q   W            +PV  +W+LNER YG
Sbjct:    4 LVFARHGESEWNKANLFTGWADVDLSEKGTQQAIDAGKLIKEAGIAFDLAFTSVLKRAIKTTNLAL-------------EYSDQ--LW------------VPVEKSWRLNERHYG 91          
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_STRPZ (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Streptococcus pyogenes serotype M49 (strain NZ131) GN=gpmA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.459e-12
Identity = 43/115 (37.39%), Postives = 59/115 (51.30%), Query Frame = 2
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRI--SNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            L+  RHGES WN+ NLFTG  DV L++KG ++AI+AGK I  + I  D+ +TS L RA  T  LA+                           E+  +  +P   +W+LNER YG
Sbjct:    4 LVFARHGESEWNKANLFTGWADVDLSEKGTQQAIDAGKLIKEAGIEFDLAFTSVLTRAIKTTNLAL---------------------------ENAGQLWVPTEKSWRLNERHYG 91          
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_STRPM (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Streptococcus pyogenes serotype M28 GN=gpmA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.459e-12
Identity = 43/115 (37.39%), Postives = 59/115 (51.30%), Query Frame = 2
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRI--SNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            L+  RHGES WN+ NLFTG  DV L++KG ++AI+AGK I  + I  D+ +TS L RA  T  LA+                           E+  +  +P   +W+LNER YG
Sbjct:    4 LVFARHGESEWNKANLFTGWADVDLSEKGTQQAIDAGKLIKEAGIEFDLAFTSVLTRAIKTTNLAL---------------------------ENAGQLWVPTEKSWRLNERHYG 91          
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_STRPG (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Streptococcus pyogenes serotype M5 (strain Manfredo) GN=gpmA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.459e-12
Identity = 43/115 (37.39%), Postives = 59/115 (51.30%), Query Frame = 2
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRI--SNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            L+  RHGES WN+ NLFTG  DV L++KG ++AI+AGK I  + I  D+ +TS L RA  T  LA+                           E+  +  +P   +W+LNER YG
Sbjct:    4 LVFARHGESEWNKANLFTGWADVDLSEKGTQQAIDAGKLIKEAGIEFDLAFTSVLTRAIKTTNLAL---------------------------ENAGQLWVPTEKSWRLNERHYG 91          
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_STRPF (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Streptococcus pyogenes serotype M4 (strain MGAS10750) GN=gpmA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.459e-12
Identity = 43/115 (37.39%), Postives = 59/115 (51.30%), Query Frame = 2
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRI--SNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            L+  RHGES WN+ NLFTG  DV L++KG ++AI+AGK I  + I  D+ +TS L RA  T  LA+                           E+  +  +P   +W+LNER YG
Sbjct:    4 LVFARHGESEWNKANLFTGWADVDLSEKGTQQAIDAGKLIKEAGIEFDLAFTSVLTRAIKTTNLAL---------------------------ENAGQLWVPTEKSWRLNERHYG 91          
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_STRPD (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Streptococcus pyogenes serotype M2 (strain MGAS10270) GN=gpmA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.459e-12
Identity = 43/115 (37.39%), Postives = 59/115 (51.30%), Query Frame = 2
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRI--SNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            L+  RHGES WN+ NLFTG  DV L++KG ++AI+AGK I  + I  D+ +TS L RA  T  LA+                           E+  +  +P   +W+LNER YG
Sbjct:    4 LVFARHGESEWNKANLFTGWADVDLSEKGTQQAIDAGKLIKEAGIEFDLAFTSVLTRAIKTTNLAL---------------------------ENAGQLWVPTEKSWRLNERHYG 91          
The following BLAST results are available for this feature:
BLAST of FC876325 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
GPMA_BRAHW4.180e-1238.262,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_BARHE4.180e-1248.752,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA2_NITEU4.180e-1238.262,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_STRU05.459e-1240.002,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_STRS75.459e-1240.002,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_STRPZ5.459e-1237.392,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_STRPM5.459e-1237.392,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_STRPG5.459e-1237.392,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_STRPF5.459e-1237.392,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_STRPD5.459e-1237.392,3-bisphosphoglycerate-dependent phosphoglycerate... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32003D07EF DevOvary1 Citrus clementina cDNA clone C32003D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876325 ID=FC876325; Name=FC876325; organism=Citrus clementina; type=EST; length=677bp
ATGAAAAAGATATTTCTGATGCTCATATGCTGCTTGAGTTAACACTGATT
GAATGTCTGCACAGGTATTTCACCAAGCTATGGGGACTCTCCAATCCAAT
CGACTTCTTAACACCTCTGGCACTCACCATGAACTTGGAAATATTAGGGT
GCATTTGATTCCAAAAAGTTTCAAGCTTAATATTGAATTGTCAAGAAACA
GGAATTTTAGATTTGGGAAGAAGAATTTTGGCATAATTCAGGCCACAGCT
TCTCAAACTTCAGTTATTGAATCTGCTTCATCTCCCTCAAATCACGACAC
CAGTGACTCCAAAAAGAAATCAAATGAAGCAGCTTTGATACTGGTTCGAC
ATGGTGAGTCTCTCTGGAATGAAAAGAACCTGTTTACAGGTTGTGTTGAT
GTGCCATTAACCAAGAAGGGTGTAGAAGAGGCAATTGAGGCTGGAAAGAG
AATAAGCAACATACCTGTCGACATGATATATACATCAGCACTAATTCGCG
CGCAGATGACTGCTATGCTCGCCATGACACAGCACCGACGCAGGAAGGTG
CCTATCATTATGCATAATGAAAGTGAACAGGCAAGGACCTGGAGTCAGAT
CTTCAGCGAAGACACCATGAAGCAGTCCATTCCCGTTGTAACAGCTTGGC
AATTGAATGAAAGAATGTATGGGGAAT
back to top