FC876329

Overview
NameFC876329
Unique NameFC876329
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length327
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10260 contig Ccv1_Contig10260:33..359. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876329 vs. ExPASy Swiss-Prot
Match: CHS5_MEDSA (Chalcone synthase 4-2 OS=Medicago sativa GN=CHS4-2 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 3.374e-35
Identity = 70/98 (71.43%), Postives = 81/98 (82.65%), Query Frame = 2
Query:   26 MATVQEIRNAQ*ADGPATVLGIGTDTPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMDPSLDARQDIV 319
            M +V EIRNAQ A+GPAT L IGT  P + V Q+ YPD+YF+IT SEH TELKEKF+RMCDKSMIK+RYMYLTEEILKENP++C  M PSLDA QD+V
Sbjct:    1 MVSVSEIRNAQRAEGPATTLAIGTANPTNCVEQSTYPDFYFKITNSEHKTELKEKFQRMCDKSMIKRRYMYLTEEILKENPSVCEIMAPSLDAWQDMV 98          
BLAST of FC876329 vs. ExPASy Swiss-Prot
Match: CHS1_CICAR (Chalcone synthase 1 OS=Cicer arietinum GN=CHS1 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 3.374e-35
Identity = 68/98 (69.39%), Postives = 81/98 (82.65%), Query Frame = 2
Query:   26 MATVQEIRNAQ*ADGPATVLGIGTDTPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMDPSLDARQDIV 319
            M +V EIR AQ A+GPAT+L IGT  P++ V Q+ YPD+YF+IT SEH  ELK+KF+RMCDKSMIK RYMYLTEEILKENP++C YM PSLD RQD+V
Sbjct:    1 MVSVSEIRKAQRAEGPATILAIGTANPSNRVEQSTYPDFYFKITNSEHKVELKQKFQRMCDKSMIKSRYMYLTEEILKENPSVCEYMAPSLDVRQDMV 98          
BLAST of FC876329 vs. ExPASy Swiss-Prot
Match: THS2_VITVI (Stilbene synthase 2 OS=Vitis vinifera GN=GSVIVT00004047001 PE=2 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 4.406e-35
Identity = 69/98 (70.41%), Postives = 85/98 (86.73%), Query Frame = 2
Query:   26 MATVQEIRNAQ*ADGPATVLGIGTDTPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMDPSLDARQDIV 319
            MA+V+EIRNAQ A GPAT+L IGT TP H V Q+DY DYYFR+TKSEHMT LK+KF R+CDKSMIKKRY++LTEE+L+E+PN+ AYM PSL+ RQ+I+
Sbjct:    1 MASVEEIRNAQRAKGPATILAIGTATPDHCVYQSDYADYYFRVTKSEHMTALKKKFNRICDKSMIKKRYIHLTEEMLEEHPNIGAYMAPSLNIRQEII 98          
BLAST of FC876329 vs. ExPASy Swiss-Prot
Match: CHS1_MEDSA (Chalcone synthase 1 OS=Medicago sativa GN=CHS1 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.187e-34
Identity = 67/97 (69.07%), Postives = 80/97 (82.47%), Query Frame = 2
Query:   26 MATVQEIRNAQ*ADGPATVLGIGTDTPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMDPSLDARQDI 316
            M +V EIR AQ A+GPAT++ IGT  PA+ V Q+ YPD+YF+IT SEH  ELKEKF+RMCDKSMIK+RYMYLTEEILK+NP +C YM PSL ARQD+
Sbjct:    1 MVSVAEIRQAQRAEGPATIMAIGTANPANCVEQSTYPDFYFKITNSEHKVELKEKFQRMCDKSMIKRRYMYLTEEILKDNPRVCEYMAPSLAARQDM 97          
BLAST of FC876329 vs. ExPASy Swiss-Prot
Match: THS4_VITVI (Stilbene synthase 4 OS=Vitis vinifera GN=GSVIVT00005194001 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 2.856e-34
Identity = 68/98 (69.39%), Postives = 86/98 (87.76%), Query Frame = 2
Query:   26 MATVQEIRNAQ*ADGPATVLGIGTDTPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMDPSLDARQDIV 319
            MA+V+EIRNAQ A GPATVL IGT TP + + Q+D+ DYYFR+TKSEHMTELK+KF R+CDKSMIKKRY++LTEE+L+E+PN+ AYM PSL+ RQ+I+
Sbjct:    1 MASVEEIRNAQRAKGPATVLAIGTATPDNCLYQSDFADYYFRVTKSEHMTELKKKFNRICDKSMIKKRYIHLTEEMLEEHPNIGAYMAPSLNIRQEII 98          
BLAST of FC876329 vs. ExPASy Swiss-Prot
Match: VPS_HUMLU (Phloroisovalerophenone synthase OS=Humulus lupulus GN=VPS PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 6.363e-34
Identity = 64/96 (66.67%), Postives = 83/96 (86.46%), Query Frame = 2
Query:   32 TVQEIRNAQ*ADGPATVLGIGTDTPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMDPSLDARQDIV 319
            TV++IR AQ A+GPAT+L IGT  PA+  NQAD+PDYYFR+TKSEHMT+LK+KF+RMC+KS IKKRY++LTEE LK+NP++C Y  PSL+ RQD++
Sbjct:    5 TVEQIRKAQRAEGPATILAIGTAVPANCFNQADFPDYYFRVTKSEHMTDLKKKFQRMCEKSTIKKRYLHLTEEHLKQNPHLCEYNAPSLNTRQDML 100          
BLAST of FC876329 vs. ExPASy Swiss-Prot
Match: THS3_VITVI (Stilbene synthase 3 (Fragment) OS=Vitis vinifera PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 5.386e-33
Identity = 66/95 (69.47%), Postives = 82/95 (86.32%), Query Frame = 2
Query:   35 VQEIRNAQ*ADGPATVLGIGTDTPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMDPSLDARQDIV 319
            V+EIRNAQ A GPAT+L IGT TP H V Q+DY DYYFR+TKSE M+ELK+KF R+CDKSMIKKRY++LTEE+L+E+PN+ AYM PSL+ RQ+I+
Sbjct:    1 VEEIRNAQRAKGPATILAIGTATPDHCVYQSDYADYYFRVTKSEPMSELKKKFNRICDKSMIKKRYIHLTEEMLEEHPNIGAYMAPSLNIRQEII 95          
BLAST of FC876329 vs. ExPASy Swiss-Prot
Match: CHSG_PETHY (Chalcone synthase G OS=Petunia hybrida GN=CHSG PE=2 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 1.200e-32
Identity = 66/97 (68.04%), Postives = 81/97 (83.51%), Query Frame = 2
Query:   26 MATVQEIRNAQ*ADGPATVLGIGTDTPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMDPSLDARQDI 316
            MATV+EIR AQ A+GPATVL IGT  P++ V+Q+ YPD+ FRIT S+H TELKEKFK MC+ SMIKKRY++LTEEILK NPN+C +  PSL+ARQ+I
Sbjct:    1 MATVEEIRKAQRAEGPATVLAIGTANPSNCVDQSAYPDFLFRITTSDHKTELKEKFKHMCEGSMIKKRYLHLTEEILKNNPNICEHKAPSLNARQEI 97          
BLAST of FC876329 vs. ExPASy Swiss-Prot
Match: THS3_ARAHY (Stilbene synthase 3 OS=Arachis hypogaea PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.673e-32
Identity = 62/98 (63.27%), Postives = 80/98 (81.63%), Query Frame = 2
Query:   26 MATVQEIRNAQ*ADGPATVLGIGTDTPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMDPSLDARQDIV 319
            M +V  IR  Q A+GPATVL IGT  P + ++Q+ Y DYYFR+T SEHMT+LK+KF+R+C+++ IK R+MYLTEEILKENPNMCAY  PSLDAR+D++
Sbjct:    1 MVSVSGIRKVQRAEGPATVLAIGTANPPNCIDQSTYADYYFRVTNSEHMTDLKKKFQRICERTQIKNRHMYLTEEILKENPNMCAYKAPSLDAREDMM 98          
BLAST of FC876329 vs. ExPASy Swiss-Prot
Match: CHSF_PETHY (Chalcone synthase F OS=Petunia hybrida GN=CHSF PE=2 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 2.673e-32
Identity = 63/98 (64.29%), Postives = 80/98 (81.63%), Query Frame = 2
Query:   26 MATVQEIRNAQ*ADGPATVLGIGTDTPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMDPSLDARQDIV 319
            M +V+E+R AQ  +GPAT+L IGT TP + V+Q  YPDY+FR+T S+H TELKEKFKRM ++SMIKK Y++LTEEILKENP++C +  PS DARQDIV
Sbjct:    1 MVSVEEVRRAQRREGPATILAIGTATPLNCVDQTTYPDYFFRVTNSDHKTELKEKFKRMFERSMIKKSYLHLTEEILKENPSICEHKAPSFDARQDIV 98          
The following BLAST results are available for this feature:
BLAST of FC876329 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
CHS5_MEDSA3.374e-3571.43Chalcone synthase 4-2 OS=Medicago sativa GN=CHS4-2... [more]
CHS1_CICAR3.374e-3569.39Chalcone synthase 1 OS=Cicer arietinum GN=CHS1 PE=... [more]
THS2_VITVI4.406e-3570.41Stilbene synthase 2 OS=Vitis vinifera GN=GSVIVT000... [more]
CHS1_MEDSA2.187e-3469.07Chalcone synthase 1 OS=Medicago sativa GN=CHS1 PE=... [more]
THS4_VITVI2.856e-3469.39Stilbene synthase 4 OS=Vitis vinifera GN=GSVIVT000... [more]
VPS_HUMLU6.363e-3466.67Phloroisovalerophenone synthase OS=Humulus lupulus... [more]
THS3_VITVI5.386e-3369.47Stilbene synthase 3 (Fragment) OS=Vitis vinifera P... [more]
CHSG_PETHY1.200e-3268.04Chalcone synthase G OS=Petunia hybrida GN=CHSG PE=... [more]
THS3_ARAHY2.673e-3263.27Stilbene synthase 3 OS=Arachis hypogaea PE=2 SV=1[more]
CHSF_PETHY2.673e-3264.29Chalcone synthase F OS=Petunia hybrida GN=CHSF PE=... [more]

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Properties
Property NameValue
Genbank descriptionC32003D12EF DevOvary1 Citrus clementina cDNA clone C32003D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876329 ID=FC876329; Name=FC876329; organism=Citrus clementina; type=EST; length=327bp
ATATTCATTAAGGGTTCAACTTGAAATGGCTACCGTTCAAGAGATCAGAA
ACGCTCAGTGAGCCGACGGTCCGGCCACCGTCCTCGGCATCGGTACGGAC
ACGCCTGCCCACAGTGTCAACCAAGCTGATTATCCCGACTATTACTTCAG
GATCACAAAGAGCGAGCATATGACGGAGCTTAAAGAGAAGTTCAAGCGCA
TGTGTGACAAGTCGATGATTAAGAAGCGTTACATGTACTTAACGGAAGAG
ATTTTGAAGGAAAACCCCAACATGTGCGCTTACATGGATCCATCACTCGA
CGCACGTCAAGACATTGTGGCGGGCGA
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