FC876330
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC876330 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2) HSP 1 Score: 56.225 bits (134), Expect = 2.165e-13 Identity = 30/91 (32.97%), Postives = 45/91 (49.45%), Query Frame = 2 Query: 266 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMS-PSQSYCD 535 F+ RN A GF+ Y +F+ A Y F TTG +E+ AFLA +T+ G+ A GP +WG C+ E + + +YC+ Sbjct: 85 FDQMLLHRNDQACAAKGFYTYDAFVAAANAYPD--FATTGDADTCKREVAAFLAQTSHETTGGWPTAPDGPYSWGYCFKEENNGNAPTYCE 173 HSP 2 Score: 39.6614 bits (91), Expect = 2.165e-13 Identity = 15/27 (55.56%), Postives = 18/27 (66.67%), Query Frame = 1 Query: 553 YPCTPGAEYYARGAIPIYWNYNYGATG 633 +PC G +YY RG I I +NYNYG G Sbjct: 178 WPCAAGKKYYGRGPIQITYNYNYGPAG 204
BLAST of FC876330 vs. ExPASy Swiss-Prot
Match: CHI1_ORYSJ (Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht1 PE=2 SV=1) HSP 1 Score: 55.8398 bits (133), Expect = 2.812e-13 Identity = 29/94 (30.85%), Postives = 44/94 (46.81%), Query Frame = 2 Query: 266 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPS--QSYCDDS 541 F+ RN A F+ Y +F+ A + F TTG + +E+ AFLA +T+ G+ A GP +WG C+ E + + YC S Sbjct: 88 FDQMLLHRNDAACPAKNFYTYDAFVAAANAFP--SFATTGDAATRKREVAAFLAQTSHETTGGWATAPDGPYSWGYCFKEENNGNVGSDYCVQS 179 HSP 2 Score: 39.6614 bits (91), Expect = 2.812e-13 Identity = 15/27 (55.56%), Postives = 18/27 (66.67%), Query Frame = 1 Query: 553 YPCTPGAEYYARGAIPIYWNYNYGATG 633 +PC G +YY RG I I +NYNYG G Sbjct: 182 WPCAAGKKYYGRGPIQISYNYNYGPAG 208
BLAST of FC876330 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSJ (Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht7 PE=2 SV=1) HSP 1 Score: 51.6026 bits (122), Expect = 7.989e-13 Identity = 28/90 (31.11%), Postives = 40/90 (44.44%), Query Frame = 2 Query: 263 QFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYC 532 QFE R+ A GF+ Y++F+ A + F TG + +E+ AFLA TS GGP +WG CY + +C Sbjct: 105 QFERMLPHRDDAACPARGFYAYRAFVAAAGAFP--AFAATGDADTRKREVAAFLAQTSHATS-------GGPYSWGYCYKEVKGATSDFC 185 HSP 2 Score: 42.3578 bits (98), Expect = 7.989e-13 Identity = 16/27 (59.26%), Postives = 20/27 (74.07%), Query Frame = 1 Query: 553 YPCTPGAEYYARGAIPIYWNYNYGATG 633 +PC PG Y+ARG + I +NYNYGA G Sbjct: 191 WPCAPGKAYHARGPMQIAYNYNYGAAG 217
BLAST of FC876330 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1) HSP 1 Score: 51.6026 bits (122), Expect = 7.989e-13 Identity = 28/90 (31.11%), Postives = 40/90 (44.44%), Query Frame = 2 Query: 263 QFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYC 532 QFE R+ A GF+ Y++F+ A + F TG + +E+ AFLA TS GGP +WG CY + +C Sbjct: 105 QFERMLPHRDDAACPARGFYAYRAFVAAAGAFP--AFAATGDADTRKREVAAFLAQTSHATS-------GGPYSWGYCYKEVKGATSDFC 185 HSP 2 Score: 42.3578 bits (98), Expect = 7.989e-13 Identity = 16/27 (59.26%), Postives = 20/27 (74.07%), Query Frame = 1 Query: 553 YPCTPGAEYYARGAIPIYWNYNYGATG 633 +PC PG Y+ARG + I +NYNYGA G Sbjct: 191 WPCAPGKAYHARGPMQIAYNYNYGAAG 217
BLAST of FC876330 vs. ExPASy Swiss-Prot
Match: CHI12_ORYSJ (Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2) HSP 1 Score: 53.9138 bits (128), Expect = 4.983e-12 Identity = 31/95 (32.63%), Postives = 42/95 (44.21%), Query Frame = 2 Query: 266 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMK-EICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEM--SPSQSYCDDS 541 F+ RN A F+ Y +F+ A + GF G D K E+ AFLA +T+ G+ A GP AWG C+ E + YC S Sbjct: 90 FDQMLLHRNDAACPASNFYTYDAFVAAASAFP--GFAAAGGDADTNKREVAAFLAQTSHETTGGWATAPDGPYAWGYCFKEENGGAAGPDYCQQS 182 HSP 2 Score: 37.3502 bits (85), Expect = 4.983e-12 Identity = 13/27 (48.15%), Postives = 18/27 (66.67%), Query Frame = 1 Query: 553 YPCTPGAEYYARGAIPIYWNYNYGATG 633 +PC G +YY RG I + +N+NYG G Sbjct: 185 WPCAAGKKYYGRGPIQLSYNFNYGPAG 211 The following BLAST results are available for this feature:
BLAST of FC876330 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 35
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC876330 ID=FC876330; Name=FC876330; organism=Citrus clementina; type=EST; length=634bpback to top |