FC876332

Overview
NameFC876332
Unique NameFC876332
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length680
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11876 contig Ccv1_Contig11876:65..744. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876332 vs. ExPASy Swiss-Prot
Match: CATS_HUMAN (Cathepsin S OS=Homo sapiens GN=CTSS PE=1 SV=3)

HSP 1 Score: 100.138 bits (248), Expect = 1.107e-20
Identity = 61/153 (39.87%), Postives = 77/153 (50.33%), Query Frame = 2
Query:  203 EHHFSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATH----GVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTND---LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHE 640
            +HH+ L+KK + K Y  + E   R  I++ NL+             H    G+    D+T  E     + L   LR+P    +     +N    LP   DWREKG V  VK QGSCG+CW+FS  GALE    L TGKLVSLS Q LVDC  E
Sbjct:   25 DHHWHLWKKTYGKQYKEKNEEAVRRLIWEKNLKFVMLHNLEHSMGMHSYDLGMNHLGDMTSEEV----MSLMSSLRVPSQWQRNITYKSNPNRILPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTE 173          
BLAST of FC876332 vs. ExPASy Swiss-Prot
Match: CATV_NPVHZ (Viral cathepsin OS=Heliothis zea nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.889e-20
Identity = 57/160 (35.62%), Postives = 82/160 (51.25%), Query Frame = 2
Query:  200 AEHHFSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQK------------LDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPIL---PTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCD 634
            +E +F  F +++NK+Y   +E+  R+ +FK NL +   + +            L  SA  GV +FSD TP E   +  G    L       +  I+   P   LP  +DWR+   V P+KDQG CGSCW+F   G +E    +   KL+ LSEQQL+DCD
Sbjct:   53 SEIYFKHFLQQYNKSYDDPKEYQYRYNVFKDNLNKINSQNRENLLNNKNNNDSLSTSAQFGVNKFSDKTPDEVLHSNTGFFLNLSQHYTLCENRIVKGAPDIRLPDYYDWRDTNKVTPIKDQGVCGSCWAFVAIGNIESQYAIRHNKLIDLSEQQLLDCD 212          
BLAST of FC876332 vs. ExPASy Swiss-Prot
Match: CATS_MOUSE (Cathepsin S OS=Mus musculus GN=Ctss PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.177e-20
Identity = 59/150 (39.33%), Postives = 75/150 (50.00%), Query Frame = 2
Query:  203 EHHFSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATH----GVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHE 640
            ++H+ L+KK   K Y  + E + R  I++ NL+             H    G+    D+T  E       LR   + PK            LP   DWREKG V  VK QGSCG+CW+FS  GALEG   L TGKL+SLS Q LVDC +E
Sbjct:   33 DYHWDLWKKTHEKEYKDKNEEEVRRLIWEKNLKFIMIHNLEYSMGMHTYQVGMNDMGDMTNEEISCRMGALRISRQSPKTVTFRSY-SNRTLPDTVDWREKGCVTEVKYQGSCGACWAFSAVGALEGQLKLKTGKLISLSAQNLVDCSNE 181          
BLAST of FC876332 vs. ExPASy Swiss-Prot
Match: CATV_NPVST (Viral cathepsin OS=Spodoptera litura multicapsid nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.374e-20
Identity = 56/173 (32.37%), Postives = 81/173 (46.82%), Query Frame = 2
Query:  188 DLLGAEHHFSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPIL---------PTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGM 679
            D+  A  ++  F K+ NK Y + ++ D  F  FK NL        +   A +G+ +FSD+    F   + GL   L    D++  P           P+   P  FDWR+   V  VK+QG CGSCW+F+  G +E    +    L+ LSEQQL+DCD          CD G+
Sbjct:   25 DIDSASVYYENFIKQHNKEYTTPDQRDAAFVNFKRNLADMNAMNNVSNQAVYGINKFSDIDKITFVNEHAGLVSNLINSTDSNFDPYRLCEYVTVAGPSARTPESFDWRKLNKVTKVKEQGVCGSCWAFAAIGNIESQYAIMHDSLIDLSEQQLLDCD-----RVDQGCDGGL 192          
BLAST of FC876332 vs. ExPASy Swiss-Prot
Match: ANAN_ANACO (Ananain OS=Ananas comosus GN=AN1 PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 9.374e-20
Identity = 54/146 (36.99%), Postives = 79/146 (54.11%), Query Frame = 2
Query:  212 FSLFKKKFNKAYASQEEHDRRFTIFKANLRRAAR-RQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDL-----PADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDC 631
            F  +  ++ + Y   +E   RF IFK N+        +   S T G+ QF+D+T  EF   Y GL     LP +  + P++  +D+     P   DWR+ GAV  VK+QG CGSCW+F++   +E    +  G LVSLSEQQ++DC
Sbjct:   37 FEEWMAEYGRVYKDNDEKMLRFQIFKNNVNHIETFNNRNGNSYTLGINQFTDMTNNEFVAQYTGLS----LPLNIKREPVVSFDDVDISSVPQSIDWRDSGAVTSVKNQGRCGSCWAFASIATVESIYKIKRGNLVSLSEQQVLDC 178          
BLAST of FC876332 vs. ExPASy Swiss-Prot
Match: CYSP3_HOMAM (Digestive cysteine proteinase 3 OS=Homarus americanus GN=LCP3 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.224e-19
Identity = 59/142 (41.55%), Postives = 76/142 (53.52%), Query Frame = 2
Query:  221 FKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKL----DPSATHGVTQFSDLTPAEFRRTYLGLRRKLR-LPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDC 631
            FK ++ + Y   +E   R  +F+ N +      K     + +    + QF D+T  EF     G ++  R  PK    A   P   + AD DWR K  V PVKDQ  CGSCW+FS TGALEG +FL   +LVSLSEQQLVDC
Sbjct:   23 FKTQYGRKYGDAKEELYRQRVFQQNEQLIEDFNKKFENGEVTFKVAMNQFGDMTNEEFNAVMKGYKKGSRGEPKAVFTAEAGP---MAADVDWRTKALVTPVKDQEQCGSCWAFSATGALEGQHFLKNDELVSLSEQQLVDC 161          
BLAST of FC876332 vs. ExPASy Swiss-Prot
Match: CATV_NPVSE (Viral cathepsin OS=Spodoptera exigua nuclear polyhedrosis virus (strain US) GN=VCATH PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.599e-19
Identity = 54/164 (32.93%), Postives = 85/164 (51.83%), Query Frame = 2
Query:  167 HHESTNN-----DLLGAEHHFSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILP---TNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCD 634
            +H S NN     ++  A  +F  F  ++NK Y S++E   R+ IF+ N+    ++   + SA + + +F+D+   E    + GL     L  +  +  ++        P  FDWR    +  VKDQG CG+CW F++ GALE    +   +L+ LSEQQLVDCD
Sbjct:   20 NHASANNKPMLYNINSAPLYFEKFITQYNKQYKSEDEKKYRYNIFRHNIESINQKNSRNDSAVYKINRFADMPKNEIVIRHTGLASG-ELGLNFCETIVVDGPAQRQRPVSFDWRSMNKITSVKDQGMCGACWRFASLGALESQYAIKYDRLIDLSEQQLVDCD 182          
BLAST of FC876332 vs. ExPASy Swiss-Prot
Match: CATV_NPVMC (Viral cathepsin OS=Mamestra configurata nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.599e-19
Identity = 55/174 (31.61%), Postives = 92/174 (52.87%), Query Frame = 2
Query:  125 LIRQVTDGGDEILSHHESTN-NDLLGAEHHFSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILP---TNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCD 634
            L+  V    D++++     N  ++  A  +F  F  ++NK Y+S++E   R+ IF+ N+     +   + SA + + +F+D+T  E    + GL     +  +  +  ++        PA+FDWR    V  VKDQG CG+CW+F+  GALE    +   +L+ L+EQQLVDCD
Sbjct:   10 LVSAVLTSHDQVVAVTIKPNLYNINSAPLYFEKFISQYNKQYSSEDEKKYRYNIFRHNIESINAKNSRNDSAVYKINRFADMTKNEVVNRHTGLASG-DIGANFCETIVVDGPGQRQRPANFDWRNYNKVTSVKDQGMCGACWAFAGLGALESQYAIKYDRLIDLAEQQLVDCD 182          
BLAST of FC876332 vs. ExPASy Swiss-Prot
Match: CATL1_CHICK (Cathepsin L1 (Fragments) OS=Gallus gallus GN=CTSL1 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.599e-19
Identity = 46/71 (64.79%), Postives = 50/71 (70.42%), Query Frame = 2
Query:  467 PADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGM 679
            P   DWREKG V PVKDQG CGSCW+FSTTGALEG +F   GKLVSLSEQ LVDC     PE    C+ G+
Sbjct:    2 PRSVDWREKGYVTPVKDQGQCGSCWAFSTTGALEGQHFRTKGKLVSLSEQNLVDCSR---PEGNQGCNGGL 69          
BLAST of FC876332 vs. ExPASy Swiss-Prot
Match: CATV_GVXN (Viral cathepsin OS=Xestia c-nigrum granulosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.088e-19
Identity = 55/155 (35.48%), Postives = 80/155 (51.61%), Query Frame = 2
Query:  188 DLLGAEHHFSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRL--PKDADQAPILPTND----LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCD 634
            D+  A+  F+ F  K+NK Y   +E + RF IFK NL     R  L+ SA   +   +D++  E  +   GL+  L     K++   P + + D    +P  FDWR++ +V  VK Q  CGSCW+FS    +E    +     + LSEQQLVDCD
Sbjct:   35 DMSNAQELFNEFVVKYNKVYKDDQEKEARFEIFKQNLADINARNALEDSAMFEINSRADISSNELLQKLTGLKLSLMRGEKKNSFCTPTVISGDSSGKVPDSFDWRDRNSVTSVKMQKECGSCWAFSAVANIESLYHIKHNVSLDLSEQQLVDCD 189          
The following BLAST results are available for this feature:
BLAST of FC876332 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
CATS_HUMAN1.107e-2039.87Cathepsin S OS=Homo sapiens GN=CTSS PE=1 SV=3[more]
CATV_NPVHZ1.889e-2035.63Viral cathepsin OS=Heliothis zea nuclear polyhedro... [more]
CATS_MOUSE7.177e-2039.33Cathepsin S OS=Mus musculus GN=Ctss PE=2 SV=1[more]
CATV_NPVST9.374e-2032.37Viral cathepsin OS=Spodoptera litura multicapsid n... [more]
ANAN_ANACO9.374e-2036.99Ananain OS=Ananas comosus GN=AN1 PE=1 SV=2[more]
CYSP3_HOMAM1.224e-1941.55Digestive cysteine proteinase 3 OS=Homarus america... [more]
CATV_NPVSE1.599e-1932.93Viral cathepsin OS=Spodoptera exigua nuclear polyh... [more]
CATV_NPVMC1.599e-1931.61Viral cathepsin OS=Mamestra configurata nucleopoly... [more]
CATL1_CHICK1.599e-1964.79Cathepsin L1 (Fragments) OS=Gallus gallus GN=CTSL1... [more]
CATV_GVXN2.088e-1935.48Viral cathepsin OS=Xestia c-nigrum granulosis viru... [more]

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Properties
Property NameValue
Genbank descriptionC32003E03EF DevOvary1 Citrus clementina cDNA clone C32003E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876332 ID=FC876332; Name=FC876332; organism=Citrus clementina; type=EST; length=680bp
GACGCTTCTATTGATATCAGCATTGTCTAAAAACATGGGATCTAAAACAG
TAGTTTTCTTTCTGGTCTCTCTCGTCGTCGTCTCCGCCGTTTCATCAGGG
ACGTTGATCGACGATGTTGATCAGCTGATCAGGCAAGTAACGGACGGCGG
TGACGAGATCCTAAGCCACCACGAGAGCACCAACAACGACCTCTTGGGCG
CAGAGCACCACTTCTCCCTATTCAAGAAGAAGTTCAATAAAGCGTACGCT
TCGCAGGAGGAGCACGACCGTAGGTTCACTATTTTCAAGGCCAACTTGCG
ACGCGCCGCGCGTCGCCAGAAGCTCGACCCGAGCGCCACCCACGGCGTCA
CTCAGTTCTCCGACTTGACTCCGGCCGAGTTCCGCCGGACGTACCTTGGC
CTCAGGAGGAAGCTGAGGCTGCCTAAGGATGCGGATCAGGCGCCGATCTT
GCCTACGAATGATTTGCCGGCGGATTTTGATTGGAGAGAGAAGGGCGCTG
TAGGCCCTGTTAAAGATCAGGGTTCATGCGGATCATGCTGGAGTTTCAGT
ACAACAGGGGCCTTGGAAGGTGCTAACTTCCTGGCAACTGGAAAGCTTGT
GAGCCTCAGTGAGCAACAGCTTGTGGATTGCGATCATGAGTGTGATCCTG
AGGAACCAGGTTCTTGTGATTCTGGGATGC
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