FC876338

Overview
NameFC876338
Unique NameFC876338
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length578
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876338_ssr454 microsatellite FC876338_ssr454:454..465. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14098 contig Ccv1_Contig14098:5..582. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876338 vs. ExPASy Swiss-Prot
Match: TIP31_ORYSJ (Probable aquaporin TIP3-1 OS=Oryza sativa subsp. japonica GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.356e-44
Identity = 86/156 (55.13%), Postives = 116/156 (74.36%), Query Frame = 3
Query:  111 PIYRIAIGTPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVY 578
            P  R  +G   +A+HPD ++AA++EF +  IFVFA +GS ++  KL     STP GL++ SLAHA AL VAV+V  NISGGHVNPA+TFGA +GG ++L+R++ YW+AQLLG+VVA LLL+ +TGG+    FAL+SGV  W+AV+ E  MTFGL+Y
Sbjct:    8 PGRRFTVGRSEDATHPDTIRAAISEFLATAIFVFAAEGSILSLGKLYQD-MSTPGGLVAVSLAHALALAVAVAVAVNISGGHVNPAITFGALLGGRLSLIRALFYWLAQLLGAVVATLLLRLTTGGMRPPGFALASGVGDWHAVLLEATMTFGLMY 162          
BLAST of FC876338 vs. ExPASy Swiss-Prot
Match: TIP31_MAIZE (Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 3.020e-44
Identity = 86/156 (55.13%), Postives = 116/156 (74.36%), Query Frame = 3
Query:  111 PIYRIAIGTPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVY 578
            P  R  +G   +A+HPD ++AA++EF +  IFVFA +GS ++  K+     ST  GL++ +LAHA AL VAV+V  NISGGHVNPAVTFGA VGG ++L+R++LYW+AQLLG+V A LLL+ +TGG+    FAL+SGV  W+AV+ E VMTFGL+Y
Sbjct:    7 PGRRFTVGRSEDATHPDTIRAAISEFIATAIFVFAAEGSVLSLGKMYHD-MSTAGGLVAVALAHALALAVAVAVAVNISGGHVNPAVTFGALVGGRVSLVRAVLYWVAQLLGAVAATLLLRLATGGMRPPGFALASGVGDWHAVLLEAVMTFGLMY 161          
BLAST of FC876338 vs. ExPASy Swiss-Prot
Match: TIP22_MAIZE (Aquaporin TIP2-2 OS=Zea mays GN=TIP2-2 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 4.361e-43
Identity = 85/153 (55.56%), Postives = 112/153 (73.20%), Query Frame = 3
Query:  120 RIAIGTPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVY 578
            ++A G+ G++    ++KA +AEF + ++FVFAG GS +AF +LT+GGA  PAGL++ ++AHA ALFV VSV AN SGGH+NPAVTFG  VGGHIT+L  + YW+AQLLG+ VACLLL+F T G       +S G +    VVFEIV+TF LVY
Sbjct:    3 KLAFGSVGDSFSVTSIKAYVAEFIATLLFVFAGVGSAIAFGQLTNGGALDPAGLVAIAVAHALALFVGVSVAANTSGGHLNPAVTFGLAVGGHITVLTGLFYWVAQLLGASVACLLLRFVTHGKAIPTHGVSGGTTELEGVVFEIVITFALVY 155          
BLAST of FC876338 vs. ExPASy Swiss-Prot
Match: TIP21_MAIZE (Aquaporin TIP2-1 OS=Zea mays GN=TIP2-1 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 7.439e-43
Identity = 85/153 (55.56%), Postives = 114/153 (74.51%), Query Frame = 3
Query:  120 RIAIGTPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVY 578
            ++A G+ G++    ++KA +AEF + ++FVFAG GS +A+ +LT+GGA  PAGL++ ++AHA ALFV VSV ANISGGH+NPAVTFG  VGGHIT+L  + YW+AQLLG+ VACLLL F T G      A+ +G+S    VVFE+V+TF LVY
Sbjct:    3 KLAFGSVGDSFSATSIKAYVAEFIATLLFVFAGVGSAIAYGQLTNGGALDPAGLVAIAIAHALALFVGVSVAANISGGHLNPAVTFGLAVGGHITILTGVFYWVAQLLGATVACLLLGFVTHGKAIPTHAV-AGISELEGVVFEVVITFALVY 154          
BLAST of FC876338 vs. ExPASy Swiss-Prot
Match: TIP1_TOBAC (Probable aquaporin TIP-type RB7-5A OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.269e-42
Identity = 85/153 (55.56%), Postives = 112/153 (73.20%), Query Frame = 3
Query:  120 RIAIGTPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVY 578
            RIA G+ G++    +LKA +AEF + ++FVFAG GS +A++KLT   A  PAGL++ ++AHAFALFV VS+ ANISGGH+NPAVT G  VGG+IT+L    YWIAQLLGS VACLLLK+ T GL      +++G++    VV EI++TF LVY
Sbjct:    3 RIAFGSIGDSFSVGSLKAYVAEFIATLLFVFAGVGSAIAYNKLTADAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAVGGNITILTGFFYWIAQLLGSTVACLLLKYVTNGLAVPTHGVAAGLNGLQGVVMEIIITFALVY 155          
BLAST of FC876338 vs. ExPASy Swiss-Prot
Match: TIP23_ARATH (Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3 PE=1 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.657e-42
Identity = 84/153 (54.90%), Postives = 111/153 (72.55%), Query Frame = 3
Query:  120 RIAIGTPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVY 578
            +I +G+ G++    +LKA L+EF + ++FVFAG GS +AF+KLT  GA  PAGL++ ++AHAFALFV VS+ ANISGGH+NPAVT G  +GG+ITL+    YWIAQ LGS+VACLLL F T G       +S+G+ +   VV EIV+TF LVY
Sbjct:    3 KIEVGSVGDSFSVSSLKAYLSEFIATLLFVFAGVGSAVAFAKLTSDGALDPAGLVAIAIAHAFALFVGVSIAANISGGHLNPAVTLGLAIGGNITLITGFFYWIAQCLGSIVACLLLVFVTNGKSVPTHGVSAGLGAVEGVVMEIVVTFALVY 155          
BLAST of FC876338 vs. ExPASy Swiss-Prot
Match: TIP2_TOBAC (Probable aquaporin TIP-type RB7-18C OS=Nicotiana tabacum PE=2 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 2.164e-42
Identity = 84/152 (55.26%), Postives = 112/152 (73.68%), Query Frame = 3
Query:  123 IAIGTPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVY 578
            IA G+ G++    +LKA +AEF + ++FVFAG GS +A++KLT   A  PAGL++ ++AHAFALFV VS+ ANISGGH+NPAVT G  VGG+IT+L    YWIAQLLGS VACLLLK+ T GL      +++G++ +  VV EI++TF LVY
Sbjct:    4 IAFGSIGDSFSVGSLKAYVAEFIATLLFVFAGVGSAIAYNKLTADAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAVGGNITILTGFFYWIAQLLGSTVACLLLKYVTNGLAVPTHGVAAGLNGFQGVVMEIIITFALVY 155          
BLAST of FC876338 vs. ExPASy Swiss-Prot
Match: TIP32_ARATH (Probable aquaporin TIP3-2 OS=Arabidopsis thaliana GN=TIP3-2 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 4.822e-42
Identity = 81/154 (52.60%), Postives = 111/154 (72.08%), Query Frame = 3
Query:  132 GTPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKL-----TDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVY 578
            G   EA+HPD+++A LAEF S  +FVFAG+GS +A  KL        G +TP GL+  +LAHA ALF AVS   N+SGGHVNPAVTF A +GG I+++R+I YW+AQL+G+++ACLLL+ +T GL    F ++SGVS  + ++ EI++TF LVY
Sbjct:   12 GRADEATHPDSIRATLAEFLSTFVFVFAGEGSILALDKLYWDTAAHTGTNTPGGLVLVALAHALALFAAVSAAINVSGGHVNPAVTFAALIGGRISVIRAIYYWVAQLIGAILACLLLRLATNGLRPVGFHVASGVSELHGLLMEIILTFALVY 165          
BLAST of FC876338 vs. ExPASy Swiss-Prot
Match: TIP21_ORYSJ (Probable aquaporin TIP2-1 OS=Oryza sativa subsp. japonica GN=TIP2-1 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 4.822e-42
Identity = 85/153 (55.56%), Postives = 113/153 (73.86%), Query Frame = 3
Query:  120 RIAIGTPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVY 578
            ++A G+ G++    ++KA +AEF + ++FVFAG GS +A+ +LT+GGA  PAGL++ ++AHA ALFV VSV ANISGGH+NPAVTFG  VGGHIT+L  + YWIAQLLG+ +ACLLLKF T G       + +G+S    VV EIV+TF LVY
Sbjct:    3 KLAFGSLGDSFSATSVKAYVAEFIATLLFVFAGVGSAIAYGQLTNGGALDPAGLVAIAIAHALALFVGVSVAANISGGHLNPAVTFGLAVGGHITILTGLFYWIAQLLGASIACLLLKFVTHGKAIPTHGV-AGISELEGVVMEIVITFALVY 154          
BLAST of FC876338 vs. ExPASy Swiss-Prot
Match: TIP_ANTMA (Probable aquaporin TIP-type OS=Antirrhinum majus GN=DIP PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 8.225e-42
Identity = 82/153 (53.59%), Postives = 112/153 (73.20%), Query Frame = 3
Query:  120 RIAIGTPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVY 578
            +IA G+ G++    ++KA +AEF + ++FVFAG GS +A++KLT   A  PAGL++ ++AHAFALFV VS+ AN+SGGH+NPAVT G  VGG+IT+L  + YWIAQ LGS VACLLLKF T GL      +++G+ +   VV EI++TF LVY
Sbjct:    3 KIAFGSIGDSFSVASIKAYVAEFIATLLFVFAGVGSAIAYNKLTSDAALDPAGLVAVAVAHAFALFVGVSMAANVSGGHLNPAVTLGLAVGGNITILTGLFYWIAQCLGSTVACLLLKFVTNGLSVPTHGVAAGMDAIQGVVMEIIITFALVY 155          
The following BLAST results are available for this feature:
BLAST of FC876338 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
TIP31_ORYSJ1.356e-4455.13Probable aquaporin TIP3-1 OS=Oryza sativa subsp. j... [more]
TIP31_MAIZE3.020e-4455.13Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1[more]
TIP22_MAIZE4.361e-4355.56Aquaporin TIP2-2 OS=Zea mays GN=TIP2-2 PE=2 SV=1[more]
TIP21_MAIZE7.439e-4355.56Aquaporin TIP2-1 OS=Zea mays GN=TIP2-1 PE=2 SV=1[more]
TIP1_TOBAC1.269e-4255.56Probable aquaporin TIP-type RB7-5A OS=Nicotiana ta... [more]
TIP23_ARATH1.657e-4254.90Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3... [more]
TIP2_TOBAC2.164e-4255.26Probable aquaporin TIP-type RB7-18C OS=Nicotiana t... [more]
TIP32_ARATH4.822e-4252.60Probable aquaporin TIP3-2 OS=Arabidopsis thaliana ... [more]
TIP21_ORYSJ4.822e-4255.56Probable aquaporin TIP2-1 OS=Oryza sativa subsp. j... [more]
TIP_ANTMA8.225e-4253.59Probable aquaporin TIP-type OS=Antirrhinum majus G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32003E10EF DevOvary1 Citrus clementina cDNA clone C32003E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876338 ID=FC876338; Name=FC876338; organism=Citrus clementina; type=EST; length=578bp
GACCGCTAGGCAATATACAACGGAGCACAAAACAGAGCCAGCAAGCTTGT
AAGAAGCCTTTTGAGCTAAAACAATATCGTTTTTCTTTGACAAAATTTTC
GATAAAAATGCCAATCTACAGAATTGCCATCGGCACGCCGGGAGAGGCAA
GCCATCCTGATGCGTTAAAGGCGGCTCTAGCTGAGTTTTTCTCGATGATT
ATTTTTGTTTTCGCCGGCCAGGGATCCGGGATGGCCTTTAGCAAGCTAAC
GGATGGCGGGGCGTCCACGCCGGCCGGTCTTATATCTGCATCACTGGCTC
ATGCATTTGCCCTATTTGTAGCTGTTTCAGTTGGTGCAAATATTTCTGGG
GGTCACGTGAACCCAGCTGTGACATTTGGTGCATTTGTTGGAGGCCACAT
TACATTGTTGAGGAGCATCCTGTATTGGATTGCACAGTTGCTAGGATCAG
TTGTTGCTTGCTTGCTGCTCAAGTTTTCCACCGGTGGATTGGAAACATCG
GCATTCGCACTATCATCTGGCGTCTCATCATGGAATGCAGTTGTCTTTGA
GATTGTGATGACCTTTGGCTTGGTCTAC
back to top