FC876338

Overview
NameFC876338
Unique NameFC876338
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length578
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876338_ssr454 microsatellite FC876338_ssr454:454..465. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14098 contig Ccv1_Contig14098:5..582. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876338 vs. ExPASy Swiss-Prot
Match: TIPA_PHAVU (Probable aquaporin TIP-type alpha OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 1.832e-41
Identity = 81/157 (51.59%), Postives = 112/157 (71.34%), Query Frame = 3
Query:  108 MPIYRIAIGTPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVY 578
            M   R + G   EA+HPD+++A+LAEF S  IFVFAG+GSG+A  K+    A +   L++ +LAHAFALF AVS   ++SGGHVNPAV+FGA +GG I+++R++ YWIAQLLGS+VA L+L+  T  +  S F +S GV   +  + E+VMTFGL+Y
Sbjct:    1 MATRRYSFGRTDEATHPDSMRASLAEFASTFIFVFAGEGSGLALVKIYQDSAFSAGELLALALAHAFALFAAVSASMHVSGGHVNPAVSFGALIGGRISVIRAVYYWIAQLLGSIVAALVLRLVTNNMRPSGFHVSPGVGVGHMFILEVVMTFGLMY 157          
BLAST of FC876338 vs. ExPASy Swiss-Prot
Match: TIP23_MAIZE (Aquaporin TIP2-3 OS=Zea mays GN=TIP2-3 PE=2 SV=2)

HSP 1 Score: 168.703 bits (426), Expect = 1.832e-41
Identity = 86/153 (56.21%), Postives = 113/153 (73.86%), Query Frame = 3
Query:  120 RIAIGTPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVY 578
            ++A G+  ++    +LKA +AEF + ++FVFAG GS +A+S+LT GGA  PAGL++ ++AHAFALFV VS+ ANISGGH+NPAVTFG  VGGHIT+L  ILYW+AQLLG+ VAC LL++ T G       + SG+S    VV EIV+TF LVY
Sbjct:    3 KLAFGSFRDSLSAASLKAYVAEFIATLLFVFAGVGSAIAYSQLTKGGALDPAGLVAIAIAHAFALFVGVSMAANISGGHLNPAVTFGLAVGGHITILTGILYWVAQLLGASVACFLLQYVTHGQAIPTHGV-SGISEIEGVVMEIVITFALVY 154          
BLAST of FC876338 vs. ExPASy Swiss-Prot
Match: TIP22_ARATH (Probable aquaporin TIP2-2 OS=Arabidopsis thaliana GN=TIP2-2 PE=1 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 4.082e-41
Identity = 83/153 (54.25%), Postives = 110/153 (71.90%), Query Frame = 3
Query:  120 RIAIGTPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVY 578
            +I IG+ G++    +LKA L+EF + ++FVFAG GS +AF+KLT   A  PAGL++ ++AHAFALFV VS+ ANISGGH+NPAVT G  VGG+IT++    YWIAQ LGS+VACLLL F T G       +++G+ +   VV EIV+TF LVY
Sbjct:    3 KIEIGSVGDSFSVASLKAYLSEFIATLLFVFAGVGSALAFAKLTSDAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAVGGNITVITGFFYWIAQCLGSIVACLLLVFVTNGESVPTHGVAAGLGAIEGVVMEIVVTFALVY 155          
BLAST of FC876338 vs. ExPASy Swiss-Prot
Match: TIP32_MAIZE (Aquaporin TIP3-2 OS=Zea mays GN=TIP3-2 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 5.331e-41
Identity = 82/155 (52.90%), Postives = 111/155 (71.61%), Query Frame = 3
Query:  120 RIAIGTPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGA--STPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVY 578
            R  +G   +A+HPD ++AA++EF +  IFVFA +GS ++  K+    +  ST  GL++ +LAHA  L VAV+V  N+SGGHVNPAVTFGA VGG ++L+R++LYW AQLLG+V A LLL+ +TGG     FAL+SGV   +AV+ E VMTFG VY
Sbjct:   12 RFTVGRSEDATHPDTIRAAISEFIATAIFVFAAEGSVLSLGKMYHDHSTISTAGGLVAVALAHALGLAVAVAVAVNVSGGHVNPAVTFGALVGGRVSLVRAVLYWAAQLLGAVAATLLLRLATGGARPPGFALASGVGDGHAVLLEAVMTFGFVY 166          
BLAST of FC876338 vs. ExPASy Swiss-Prot
Match: TIP21_ARATH (Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1 PE=1 SV=2)

HSP 1 Score: 166.007 bits (419), Expect = 1.188e-40
Identity = 81/152 (53.29%), Postives = 109/152 (71.71%), Query Frame = 3
Query:  123 IAIGTPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVY 578
            +A G+  ++    +L+A LAEF S ++FVFAG GS +A++KLT   A    GL++ ++ H FALFVAV++GANISGGHVNPAVTFG  VGG IT++  + YWIAQLLGS  AC LLK+ TGGL     ++++G+ S   VV EI++TF LVY
Sbjct:    4 VAFGSFDDSFSLASLRAYLAEFISTLLFVFAGVGSAIAYAKLTSDAALDTPGLVAIAVCHGFALFVAVAIGANISGGHVNPAVTFGLAVGGQITVITGVFYWIAQLLGSTAACFLLKYVTGGLAVPTHSVAAGLGSIEGVVMEIIITFALVY 155          
BLAST of FC876338 vs. ExPASy Swiss-Prot
Match: TIP22_ORYSJ (Probable aquaporin TIP2-2 OS=Oryza sativa subsp. japonica GN=TIP2-2 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 2.925e-39
Identity = 82/152 (53.95%), Postives = 110/152 (72.37%), Query Frame = 3
Query:  123 IAIGTPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVY 578
            IA G   ++    +LKA +AEF S ++FVFAG GS +A++KLT G    PAGL++ ++ H F LFVAV++GANISGGHVNPAVTFG  +GG IT+L  + YWIAQLLG++V  +L++F T G+ T    L SGV ++  VV EI++TFGLVY
Sbjct:    5 IAFGRFDDSFSAASLKAYVAEFISTLVFVFAGVGSAIAYTKLTGGAPLDPAGLVAVAVCHGFGLFVAVAIGANISGGHVNPAVTFGLALGGQITILTGVFYWIAQLLGAIVGAVLVQFCT-GVATPTHGL-SGVGAFEGVVMEIIVTFGLVY 154          
BLAST of FC876338 vs. ExPASy Swiss-Prot
Match: TIP41_ARATH (Aquaporin TIP4-1 OS=Arabidopsis thaliana GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 4.833e-34
Identity = 72/153 (47.06%), Postives = 101/153 (66.01%), Query Frame = 3
Query:  120 RIAIGTPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVY 578
            +I +G   EA+ PD +KA + EF +  +FVFAG GS MA   L     +T  GL + ++AHAF + V +S G +ISGGH+NPAVT G  +GGHI++ R+ LYWI QLL S  AC LL + TGG+ T    L+SGVS    +++EI++TF L++
Sbjct:    3 KIELGHHSEAAKPDCIKALIVEFITTFLFVFAGVGSAMATDSLV---GNTLVGLFAVAVAHAFVVAVMISAG-HISGGHLNPAVTLGLLLGGHISVFRAFLYWIDQLLASSAACFLLSYLTGGMGTPVHTLASGVSYTQGIIWEIILTFSLLF 151          
BLAST of FC876338 vs. ExPASy Swiss-Prot
Match: TIP43_ORYSJ (Probable aquaporin TIP4-3 OS=Oryza sativa subsp. japonica GN=TIP4-3 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 2.932e-31
Identity = 76/154 (49.35%), Postives = 97/154 (62.99%), Query Frame = 3
Query:  120 RIAIGTPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLE-TSAFALSSGVSSWNAVVFEIVMTFGLVY 578
            ++A+G   EA+ P  L+A +AE     +FVF+G GS MA +KL  GG  T  GL + + AHA  + V VS G ++SGGH+NPAVT G   GGHITL RS LY  AQLLGS +ACLLL   TGG E     A + GV +  AV  E V+TF L++
Sbjct:    3 KLALGHHREATDPGCLRAVVAELLLTFLFVFSGVGSAMAAAKL-GGGGDTIMGLTAVAAAHALVVAVMVSAGLHVSGGHINPAVTLGLAAGGHITLFRSALYAAAQLLGSSLACLLLAALTGGEEAVPVHAPAPGVGAARAVAMEAVLTFSLLF 155          
BLAST of FC876338 vs. ExPASy Swiss-Prot
Match: TIP32_ORYSJ (Probable aquaporin TIP3-2 OS=Oryza sativa subsp. japonica GN=TIP3-2 PE=2 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 1.901e-30
Identity = 71/142 (50.00%), Postives = 94/142 (66.20%), Query Frame = 3
Query:  156 PDALKAALAEFFSMIIFVFAGQGSGMAFSKL-TDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVY 578
            P A +AAL+EF +  +FVFA +GS     K+  D G  T  GL+  ++AHA AL  AV+V  N SGGHVNPAVTFG  VG  I+  R+ LYW AQLLG+V+A LLL+ ++GG+    F L   +   +A++ E+VMTFGLVY
Sbjct:   25 PGATRAALSEFVATAVFVFAAEGSVYGLWKMYRDTG--TLGGLLVVAVAHALALAAAVAVSRNASGGHVNPAVTFGVLVGRRISFARAALYWAAQLLGAVLAVLLLRLASGGMRPMGFTLGHRIHERHALLLEVVMTFGLVY 164          
BLAST of FC876338 vs. ExPASy Swiss-Prot
Match: TIP44_MAIZE (Aquaporin TIP4-4 OS=Zea mays GN=TIP4-4 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 5.530e-30
Identity = 72/154 (46.75%), Postives = 91/154 (59.09%), Query Frame = 3
Query:  120 RIAIGTPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKF-STGGLETSAFALSSGVSSWNAVVFEIVMTFGLVY 578
            + A+G   EAS    ++A LAE     +FVFAG GS MA  KL  GG  T  GL + +LAH   + V VS G ++SGGH+NPAVT G    G ITL RS LY  AQLLGS +ACLLL F +         AL +GV +   V+ E V+TF L++
Sbjct:    3 KFALGHHREASDAGCVRAVLAELILTFLFVFAGVGSAMATGKLAGGGGDTVVGLTAVALAHTLVVAVMVSAGLHVSGGHINPAVTLGLAATGRITLFRSALYVAAQLLGSTLACLLLAFLAVADSGVPVHALGAGVGALRGVLMEAVLTFSLLF 156          
The following BLAST results are available for this feature:
BLAST of FC876338 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
TIPA_PHAVU1.832e-4151.59Probable aquaporin TIP-type alpha OS=Phaseolus vul... [more]
TIP23_MAIZE1.832e-4156.21Aquaporin TIP2-3 OS=Zea mays GN=TIP2-3 PE=2 SV=2[more]
TIP22_ARATH4.082e-4154.25Probable aquaporin TIP2-2 OS=Arabidopsis thaliana ... [more]
TIP32_MAIZE5.331e-4152.90Aquaporin TIP3-2 OS=Zea mays GN=TIP3-2 PE=2 SV=1[more]
TIP21_ARATH1.188e-4053.29Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1... [more]
TIP22_ORYSJ2.925e-3953.95Probable aquaporin TIP2-2 OS=Oryza sativa subsp. j... [more]
TIP41_ARATH4.833e-3447.06Aquaporin TIP4-1 OS=Arabidopsis thaliana GN=TIP4-1... [more]
TIP43_ORYSJ2.932e-3149.35Probable aquaporin TIP4-3 OS=Oryza sativa subsp. j... [more]
TIP32_ORYSJ1.901e-3050.00Probable aquaporin TIP3-2 OS=Oryza sativa subsp. j... [more]
TIP44_MAIZE5.530e-3046.75Aquaporin TIP4-4 OS=Zea mays GN=TIP4-4 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC32003E10EF DevOvary1 Citrus clementina cDNA clone C32003E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876338 ID=FC876338; Name=FC876338; organism=Citrus clementina; type=EST; length=578bp
GACCGCTAGGCAATATACAACGGAGCACAAAACAGAGCCAGCAAGCTTGT
AAGAAGCCTTTTGAGCTAAAACAATATCGTTTTTCTTTGACAAAATTTTC
GATAAAAATGCCAATCTACAGAATTGCCATCGGCACGCCGGGAGAGGCAA
GCCATCCTGATGCGTTAAAGGCGGCTCTAGCTGAGTTTTTCTCGATGATT
ATTTTTGTTTTCGCCGGCCAGGGATCCGGGATGGCCTTTAGCAAGCTAAC
GGATGGCGGGGCGTCCACGCCGGCCGGTCTTATATCTGCATCACTGGCTC
ATGCATTTGCCCTATTTGTAGCTGTTTCAGTTGGTGCAAATATTTCTGGG
GGTCACGTGAACCCAGCTGTGACATTTGGTGCATTTGTTGGAGGCCACAT
TACATTGTTGAGGAGCATCCTGTATTGGATTGCACAGTTGCTAGGATCAG
TTGTTGCTTGCTTGCTGCTCAAGTTTTCCACCGGTGGATTGGAAACATCG
GCATTCGCACTATCATCTGGCGTCTCATCATGGAATGCAGTTGTCTTTGA
GATTGTGATGACCTTTGGCTTGGTCTAC
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