FC876338

Overview
NameFC876338
Unique NameFC876338
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length578
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876338_ssr454 microsatellite FC876338_ssr454:454..465. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14098 contig Ccv1_Contig14098:5..582. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876338 vs. ExPASy Swiss-Prot
Match: PIP24_MAIZE (Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.480e-16
Identity = 51/151 (33.77%), Postives = 82/151 (54.30%), Query Frame = 3
Query:  168 KAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTP------AGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFA--------LSSGVSSWNAVVFEIVMTFGLVY 578
            +A +AEF + ++F++    + + +   TD  AS P       G++  + A    +F+ V   A ISGGH+NPAVTFG F+   ++L+R++LY IAQ LG++    L+K    G +++ +         LS G S    +  EI+ TF LVY
Sbjct:   41 RAVIAEFIATLLFLYITVATVIGYKHQTDASASGPDAACGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYIIAQCLGAICGVGLVK----GFQSAYYVRYGGGANELSDGYSKGTGLAAEIIGTFVLVY 187          
BLAST of FC876338 vs. ExPASy Swiss-Prot
Match: PIP23_MAIZE (Aquaporin PIP2-3 OS=Zea mays GN=PIP2-3 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.480e-16
Identity = 51/151 (33.77%), Postives = 82/151 (54.30%), Query Frame = 3
Query:  168 KAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTP------AGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFA--------LSSGVSSWNAVVFEIVMTFGLVY 578
            +A +AEF + ++F++    + + +   TD  AS P       G++  + A    +F+ V   A ISGGH+NPAVTFG F+   ++L+R++LY IAQ LG++    L+K    G +++ +         LS G S    +  EI+ TF LVY
Sbjct:   42 RAVIAEFIATLLFLYITVATVIGYKHQTDAAASGPDAACGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYIIAQCLGAICGVGLVK----GFQSAYYVRYGGGANELSDGYSKGTGLAAEIIGTFVLVY 188          
BLAST of FC876338 vs. ExPASy Swiss-Prot
Match: AQP1_SHEEP (Aquaporin-1 OS=Ovis aries GN=AQP1 PE=2 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 4.545e-16
Identity = 54/142 (38.03%), Postives = 83/142 (58.45%), Query Frame = 3
Query:  168 KAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAV---SVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAF---ALSSGVSSWNAVVFEIVMTFGLV 575
            +A +AEF +MI+F+F   GS + F        +T A   +  ++ AF L +A    SVG +ISG H+NPAVT G  +   I++LR+I+Y IAQ +G++VA ++L   T  L  ++    AL+ GV+S   +  EI+ T  LV
Sbjct:   12 RAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVG-HISGAHLNPAVTLGLLLSCQISILRAIMYIIAQCVGAIVATVILSGITSSLPDNSLGLNALAPGVNSGQGLGIEIIGTLQLV 152          
BLAST of FC876338 vs. ExPASy Swiss-Prot
Match: PIP25_MAIZE (Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.752e-16
Identity = 49/147 (33.33%), Postives = 79/147 (53.74%), Query Frame = 3
Query:  168 KAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTP------AGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLET----SAFALSSGVSSWNAVVFEIVMTFGLVY 578
            +A +AEF + ++F++    + + +   TD  AS P       G++  + A    +F+ V   A +SGGH+NPAVTFG F+   ++L+R++LY +AQ LG++    L+K             A  LS+G S    +  EI+ TF LVY
Sbjct:   37 RAVIAEFVATLLFLYITVATVIGYKHQTDAAASGPDAACGGVGVLGIAWAFGGMIFILVYCTAGVSGGHINPAVTFGLFLARKVSLVRALLYIVAQCLGAICGVGLVKGFQSAFYVRYGGGANELSAGYSKGTGLAAEIIGTFVLVY 183          
BLAST of FC876338 vs. ExPASy Swiss-Prot
Match: PIP26_ARATH (Probable aquaporin PIP2-6 OS=Arabidopsis thaliana GN=PIP2-6 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.012e-15
Identity = 56/148 (37.84%), Postives = 80/148 (54.05%), Query Frame = 3
Query:  168 KAALAEFFSMIIFVFAGQGSGMAFSKLTD----GGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKF--ST-----GGLETSAFALSSGVSSWNAVVFEIVMTFGLVY 578
            +A +AEF + ++F++    + + F   TD    GGA    GL+  S A    +F+ V   A ISGGH+NPAVTFG F+   ++L+R++ Y +AQ LG+     L+K   ST     GG    A  LS G +    V  EI+ TF LVY
Sbjct:   38 RAVIAEFIATLLFLYVTVLTVIGFKSQTDINAGGGACASVGLLGISWAFGGMIFILVYCTAGISGGHINPAVTFGLFLASKVSLVRAVSYMVAQCLGATCGVGLVKVFQSTYYNRYGG---GANMLSDGYNVGVGVGAEIIGTFVLVY 182          
BLAST of FC876338 vs. ExPASy Swiss-Prot
Match: PIP25_ORYSJ (Aquaporin PIP2-5 OS=Oryza sativa subsp. japonica GN=PIP2-5 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.012e-15
Identity = 52/151 (34.44%), Postives = 82/151 (54.30%), Query Frame = 3
Query:  168 KAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTP------AGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETS--------AFALSSGVSSWNAVVFEIVMTFGLVY 578
            +A +AEF + ++F++    + + +   TD  AS         G++  + A    +F+ V   A ISGGH+NPAVTFG F+   ++L+R+ILY +AQ LG+V    L+K    G ++S        A  L++G S    +  EI+ TF LVY
Sbjct:   36 RAVIAEFVATLLFLYVTVATVIGYKHQTDASASGDDAACGGVGVLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRAILYIVAQCLGAVCGVALVK----GFQSSFYDRYGGGANELAAGYSKGTGLAAEIIGTFVLVY 182          
BLAST of FC876338 vs. ExPASy Swiss-Prot
Match: AQP1_BOVIN (Aquaporin-1 OS=Bos taurus GN=AQP1 PE=1 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 1.012e-15
Identity = 54/142 (38.03%), Postives = 82/142 (57.75%), Query Frame = 3
Query:  168 KAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAV---SVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAF---ALSSGVSSWNAVVFEIVMTFGLV 575
            +A +AEF +MI+F+F   GS + F        +T A   +  ++ AF L +A    SVG +ISG H+NPAVT G  +   I++LR+I+Y IAQ +G++VA  +L   T  L  ++    AL+ GV+S   +  EI+ T  LV
Sbjct:   12 RAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVG-HISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLPDNSLGLNALAPGVNSGQGLGIEIIGTLQLV 152          
BLAST of FC876338 vs. ExPASy Swiss-Prot
Match: PIP25_ARATH (Probable aquaporin PIP2-5 OS=Arabidopsis thaliana GN=PIP2-5 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.256e-15
Identity = 49/145 (33.79%), Postives = 77/145 (53.10%), Query Frame = 3
Query:  168 KAALAEFFSMIIFVFAGQGSGMAFSKLTDGGAS----TPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLET----SAFALSSGVSSWNAVVFEIVMTFGLVY 578
            +A +AEF + ++F++    + + +   TD   +    T  G++  + A    +F+ V   A ISGGH+NPAVTFG  +   +TL+R+++Y +AQ LG++    L+K       T     A  LS G S    V  EI+ TF LVY
Sbjct:   38 RALIAEFIATLLFLYVTIMTVIGYKSQTDPALNPDQCTGVGVLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLLLARKVTLVRAVMYMVAQCLGAICGVALVKAFQSAYFTRYGGGANGLSDGYSIGTGVAAEIIGTFVLVY 182          
BLAST of FC876338 vs. ExPASy Swiss-Prot
Match: PIP22_MAIZE (Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.256e-15
Identity = 53/149 (35.57%), Postives = 82/149 (55.03%), Query Frame = 3
Query:  168 KAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPA--------GLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLK-FSTGGLET---SAFALSSGVSSWNAVVFEIVMTFGLVY 578
            +A +AEF + ++F++    + + +   TD  AS           G++  + A    +FV V   A ISGGH+NPAVTFG F+   ++L+R++LY +AQ LG+V    L+K F +   +     A +L+SG S    +  EIV TF LVY
Sbjct:   42 RAVIAEFIATLLFLYVTVATVIGYKHQTDASASGAGADAACGGVGVLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYMVAQCLGAVCGVGLVKAFQSAYFDRYGGGANSLASGYSRGAGLGAEIVGTFVLVY 190          
BLAST of FC876338 vs. ExPASy Swiss-Prot
Match: AQP1_CANFA (Aquaporin-1 OS=Canis familiaris GN=AQP1 PE=2 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 2.256e-15
Identity = 52/142 (36.62%), Postives = 81/142 (57.04%), Query Frame = 3
Query:  168 KAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAV---SVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFA---LSSGVSSWNAVVFEIVMTFGLV 575
            +A +AEF +MI+FVF   GS + F+       +  A   +  ++ AF L +A    SVG +ISG H+NPAVT G  +   I++LR+++Y IAQ +G++VA  +L   T  L  ++     L+ GV+S   +  EI+ T  LV
Sbjct:   12 RAVVAEFLAMILFVFISIGSALGFNYPVRNNQTAGAAQDNVKVSLAFGLSIATLAQSVG-HISGAHLNPAVTLGLLLSCQISILRAVMYIIAQCVGAIVATAILSGITSSLPDNSLGRNELAPGVNSGQGLGIEIIGTLQLV 152          
The following BLAST results are available for this feature:
BLAST of FC876338 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
PIP24_MAIZE3.480e-1633.77Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1[more]
PIP23_MAIZE3.480e-1633.77Aquaporin PIP2-3 OS=Zea mays GN=PIP2-3 PE=2 SV=1[more]
AQP1_SHEEP4.545e-1638.03Aquaporin-1 OS=Ovis aries GN=AQP1 PE=2 SV=3[more]
PIP25_MAIZE7.752e-1633.33Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1[more]
PIP26_ARATH1.012e-1537.84Probable aquaporin PIP2-6 OS=Arabidopsis thaliana ... [more]
PIP25_ORYSJ1.012e-1534.44Aquaporin PIP2-5 OS=Oryza sativa subsp. japonica G... [more]
AQP1_BOVIN1.012e-1538.03Aquaporin-1 OS=Bos taurus GN=AQP1 PE=1 SV=3[more]
PIP25_ARATH2.256e-1533.79Probable aquaporin PIP2-5 OS=Arabidopsis thaliana ... [more]
PIP22_MAIZE2.256e-1535.57Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1[more]
AQP1_CANFA2.256e-1536.62Aquaporin-1 OS=Canis familiaris GN=AQP1 PE=2 SV=3[more]

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Properties
Property NameValue
Genbank descriptionC32003E10EF DevOvary1 Citrus clementina cDNA clone C32003E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876338 ID=FC876338; Name=FC876338; organism=Citrus clementina; type=EST; length=578bp
GACCGCTAGGCAATATACAACGGAGCACAAAACAGAGCCAGCAAGCTTGT
AAGAAGCCTTTTGAGCTAAAACAATATCGTTTTTCTTTGACAAAATTTTC
GATAAAAATGCCAATCTACAGAATTGCCATCGGCACGCCGGGAGAGGCAA
GCCATCCTGATGCGTTAAAGGCGGCTCTAGCTGAGTTTTTCTCGATGATT
ATTTTTGTTTTCGCCGGCCAGGGATCCGGGATGGCCTTTAGCAAGCTAAC
GGATGGCGGGGCGTCCACGCCGGCCGGTCTTATATCTGCATCACTGGCTC
ATGCATTTGCCCTATTTGTAGCTGTTTCAGTTGGTGCAAATATTTCTGGG
GGTCACGTGAACCCAGCTGTGACATTTGGTGCATTTGTTGGAGGCCACAT
TACATTGTTGAGGAGCATCCTGTATTGGATTGCACAGTTGCTAGGATCAG
TTGTTGCTTGCTTGCTGCTCAAGTTTTCCACCGGTGGATTGGAAACATCG
GCATTCGCACTATCATCTGGCGTCTCATCATGGAATGCAGTTGTCTTTGA
GATTGTGATGACCTTTGGCTTGGTCTAC
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