FC876338

Overview
NameFC876338
Unique NameFC876338
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length578
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876338_ssr454 microsatellite FC876338_ssr454:454..465. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14098 contig Ccv1_Contig14098:5..582. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876338 vs. ExPASy Swiss-Prot
Match: PIP27_ARATH (Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 2.494e-14
Identity = 51/150 (34.00%), Postives = 77/150 (51.33%), Query Frame = 3
Query:  141 GEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVAC----LLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVY 578
            GE       +A +AEF + ++F++    + +   K T  G     GL+  + A    +FV V   A ISGGH+NPAVTFG F+   ++L+R++ Y IAQ LG++         +K     L   A  ++ G S   A+  EI+ TF LVY
Sbjct:   29 GELKSWSFYRALIAEFIATLLFLYVTVATVIGHKKQT--GPCDGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRALGYMIAQCLGAICGVGFVKAFMKTPYNTLGGGANTVADGYSKGTALGAEIIGTFVLVY 176          
BLAST of FC876338 vs. ExPASy Swiss-Prot
Match: AQP5_SHEEP (Aquaporin-5 OS=Ovis aries GN=AQP5 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.494e-14
Identity = 47/139 (33.81%), Postives = 73/139 (52.52%), Query Frame = 3
Query:  165 LKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLL---LKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGL 572
            LKA  AEF + +IFVF G GS + +        S    ++  SLA   A+         +SGGH+NPA+T    VG  I+LLR++ Y +AQL+G++    +   L         +  AL++  ++  AVV E+++TF L
Sbjct:   11 LKAVFAEFLATLIFVFFGLGSALKWP-------SAMPSVLQISLAFGLAIGTMAQALGPVSGGHMNPAITLALLVGNQISLLRAVFYLVAQLVGAIAGAAILYGLAPYNARSNLAVNALNNNTTAGQAVVAEMILTFQL 142          
BLAST of FC876338 vs. ExPASy Swiss-Prot
Match: AQP1_RAT (Aquaporin-1 OS=Rattus norvegicus GN=Aqp1 PE=2 SV=4)

HSP 1 Score: 78.5666 bits (192), Expect = 2.494e-14
Identity = 46/139 (33.09%), Postives = 75/139 (53.96%), Query Frame = 3
Query:  168 KAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFA---LSSGVSSWNAVVFEIVMTFGLV 575
            +A +AEF +M +FVF   GS + F+   +   +     +  SLA   ++        +ISG H+NPAVT G  +   I++LR+++Y IAQ +G++VA  +L   T  L  ++     L+ GV+S   +  EI+ T  LV
Sbjct:   12 RAVVAEFLAMTLFVFISIGSALGFNYPLERNQTLVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISILRAVMYIIAQCVGAIVASAILSGITSSLLENSLGRNDLARGVNSGQGLGIEIIGTLQLV 150          
BLAST of FC876338 vs. ExPASy Swiss-Prot
Match: MIP_RAT (Lens fiber major intrinsic protein (Fragment) OS=Rattus norvegicus GN=Mip PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 3.257e-14
Identity = 52/139 (37.41%), Postives = 70/139 (50.36%), Query Frame = 3
Query:  168 KAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALS---SGVSSWNAVVFEIVMTFGLV 575
            +A  AEFF+ + +VF G GS + +       A  P  ++  +LA   AL   V    +ISG HVNPAVTF   VG  ++LLR+  Y  AQLLG+V    +L   T        AL+   +GVS   A   EI +T   V
Sbjct:    9 RAIFAEFFATLFYVFFGLGSSLRW-------APGPLHVLQVALAFGLALATLVQTVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYIAAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHAGVSVGQATTVEIFLTLQFV 140          
BLAST of FC876338 vs. ExPASy Swiss-Prot
Match: AQP2_RAT (Aquaporin-2 OS=Rattus norvegicus GN=Aqp2 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.257e-14
Identity = 48/141 (34.04%), Postives = 75/141 (53.19%), Query Frame = 3
Query:  168 KAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFST-----GGLETSAFALSSGVSSWNAVVFEIVMTFGLV 575
            +A LAEF + ++FVF G GS + +       AS+P  ++  ++A    + + V    ++SG H+NPAVT    VG H++ LR+  Y  AQLLG+V    +L   T     G L  +  AL +  ++  AV  E+ +T  LV
Sbjct:   11 RAVLAEFLATLLFVFFGLGSALQW-------ASSPPSVLQIAVAFGLGIGILVQALGHVSGAHINPAVTVACLVGCHVSFLRAAFYVAAQLLGAVAGAAILHEITPVEIRGDLAVN--ALHNNATAGQAVTVELFLTMQLV 142          
BLAST of FC876338 vs. ExPASy Swiss-Prot
Match: AQP5_MOUSE (Aquaporin-5 OS=Mus musculus GN=Aqp5 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.254e-14
Identity = 47/138 (34.06%), Postives = 72/138 (52.17%), Query Frame = 3
Query:  168 KAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGL---ETSAFALSSGVSSWNAVVFEIVMTFGL 572
            KA  AEF + +IFVF G GS + +        S    ++  S+A   A+         +SGGH+NPA+T    +G  I+LLR+I Y  AQL+G++    +L +   G      +  ALS+  +   AVV E+++TF L
Sbjct:   12 KAVFAEFLATLIFVFFGLGSALKWP-------SALPTILQISIAFGLAIGTLAQALGPVSGGHINPAITLALLIGNQISLLRAIFYVAAQLVGAIAGAGILYWLAPGNARGNLAVNALSNNTTPGKAVVVELILTFQL 142          
BLAST of FC876338 vs. ExPASy Swiss-Prot
Match: PIP27_MAIZE (Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.556e-14
Identity = 53/160 (33.12%), Postives = 86/160 (53.75%), Query Frame = 3
Query:  138 PGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDG---GASTPAGLISASLAHAFA--LFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAF--------ALSSGVSSWNAVVFEIVMTFGLVY 578
            P E +     +AA+AEF + ++F++    + + + + +D    G +   G+    +A AF   +F+ V   A ISGGH+NPAVTFG F+G  ++L+R++LY IAQ  G++    L K    G + S +         +S G +   A+  EI+ TF LVY
Sbjct:   30 PDELTKWSLYRAAIAEFIATLLFLYITVLTIIGYKRQSDTKIPGNTECDGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLVRALLYMIAQCAGAICGAGLAK----GFQKSFYNRYGGGVNTVSDGYNKGTALGAEIIGTFVLVY 185          
BLAST of FC876338 vs. ExPASy Swiss-Prot
Match: MIP_CAVPO (Lens fiber major intrinsic protein OS=Cavia porcellus GN=MIP PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.556e-14
Identity = 51/139 (36.69%), Postives = 70/139 (50.36%), Query Frame = 3
Query:  168 KAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALS---SGVSSWNAVVFEIVMTFGLV 575
            +A  AEFF+ + +VF G G+ + +       A  P  ++  +LA   AL   V    +ISG HVNPAVTF   VG  ++LLR+  Y  AQLLG+V    +L   T        AL+   +GVS   A   EI +T   V
Sbjct:   11 RAIFAEFFATLFYVFFGLGASLRW-------APGPLHVLQVALAFGLALAXLVQTVGHISGAHVNPAVTFXFLVGSQMSLLRAFCYMAAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHAGVSVXQATTVEIFLTLQFV 142          
BLAST of FC876338 vs. ExPASy Swiss-Prot
Match: AQP1_PONAB (Aquaporin-1 OS=Pongo abelii GN=AQP1 PE=2 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 5.556e-14
Identity = 45/139 (32.37%), Postives = 72/139 (51.80%), Query Frame = 3
Query:  168 KAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFA---LSSGVSSWNAVVFEIVMTFGLV 575
            +A +AEF +M +FVF   GS + F        +     +  SLA   ++        +ISG H+NPAVT G  +   I++ R+++Y IAQ +G++VA  +L   T  L  ++     L+ GV+S   +  EI+ T  LV
Sbjct:   12 RAVVAEFLAMTLFVFISIGSALGFKYPVGNNQTAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAILSGITSSLPGNSLGRNDLADGVNSGQGLGIEIIGTLQLV 150          
BLAST of FC876338 vs. ExPASy Swiss-Prot
Match: PIP24_ORYSJ (Aquaporin PIP2-4 OS=Oryza sativa subsp. japonica GN=PIP2-4 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.256e-14
Identity = 49/147 (33.33%), Postives = 79/147 (53.74%), Query Frame = 3
Query:  168 KAALAEFFSMIIFVFAGQGSGMAFSKLTDG---GASTPAGLISA-SLAHAFA--LFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLET----SAFALSSGVSSWNAVVFEIVMTFGLVY 578
            +A +AEF + ++F++    + + +   TD    GA    G +    +A AF   +F+ V   A +SGGH+NPAVT G F+   ++L+R++LY  AQ LG++    L+K     L       A  L++G S+   +  EI+ TF LVY
Sbjct:   39 RALIAEFVATLLFLYVTVATVIGYKHQTDAAVNGADAACGGVGVLGIAWAFGGMIFILVYCTAGVSGGHINPAVTLGLFLARKVSLVRALLYMAAQCLGAICGVALVKGFQSSLYDRYGGGANELAAGYSTGTGLAAEIIGTFVLVY 185          
The following BLAST results are available for this feature:
BLAST of FC876338 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
PIP27_ARATH2.494e-1434.00Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7... [more]
AQP5_SHEEP2.494e-1433.81Aquaporin-5 OS=Ovis aries GN=AQP5 PE=2 SV=1[more]
AQP1_RAT2.494e-1433.09Aquaporin-1 OS=Rattus norvegicus GN=Aqp1 PE=2 SV=4[more]
MIP_RAT3.257e-1437.41Lens fiber major intrinsic protein (Fragment) OS=R... [more]
AQP2_RAT3.257e-1434.04Aquaporin-2 OS=Rattus norvegicus GN=Aqp2 PE=1 SV=1[more]
AQP5_MOUSE4.254e-1434.06Aquaporin-5 OS=Mus musculus GN=Aqp5 PE=2 SV=1[more]
PIP27_MAIZE5.556e-1433.13Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1[more]
MIP_CAVPO5.556e-1436.69Lens fiber major intrinsic protein OS=Cavia porcel... [more]
AQP1_PONAB5.556e-1432.37Aquaporin-1 OS=Pongo abelii GN=AQP1 PE=2 SV=3[more]
PIP24_ORYSJ7.256e-1433.33Aquaporin PIP2-4 OS=Oryza sativa subsp. japonica G... [more]

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Properties
Property NameValue
Genbank descriptionC32003E10EF DevOvary1 Citrus clementina cDNA clone C32003E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876338 ID=FC876338; Name=FC876338; organism=Citrus clementina; type=EST; length=578bp
GACCGCTAGGCAATATACAACGGAGCACAAAACAGAGCCAGCAAGCTTGT
AAGAAGCCTTTTGAGCTAAAACAATATCGTTTTTCTTTGACAAAATTTTC
GATAAAAATGCCAATCTACAGAATTGCCATCGGCACGCCGGGAGAGGCAA
GCCATCCTGATGCGTTAAAGGCGGCTCTAGCTGAGTTTTTCTCGATGATT
ATTTTTGTTTTCGCCGGCCAGGGATCCGGGATGGCCTTTAGCAAGCTAAC
GGATGGCGGGGCGTCCACGCCGGCCGGTCTTATATCTGCATCACTGGCTC
ATGCATTTGCCCTATTTGTAGCTGTTTCAGTTGGTGCAAATATTTCTGGG
GGTCACGTGAACCCAGCTGTGACATTTGGTGCATTTGTTGGAGGCCACAT
TACATTGTTGAGGAGCATCCTGTATTGGATTGCACAGTTGCTAGGATCAG
TTGTTGCTTGCTTGCTGCTCAAGTTTTCCACCGGTGGATTGGAAACATCG
GCATTCGCACTATCATCTGGCGTCTCATCATGGAATGCAGTTGTCTTTGA
GATTGTGATGACCTTTGGCTTGGTCTAC
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