FC876338

Overview
NameFC876338
Unique NameFC876338
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length578
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876338_ssr454 microsatellite FC876338_ssr454:454..465. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14098 contig Ccv1_Contig14098:5..582. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876338 vs. ExPASy Swiss-Prot
Match: PIP24_ARATH (Probable aquaporin PIP2-4 OS=Arabidopsis thaliana GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.256e-14
Identity = 47/145 (32.41%), Postives = 76/145 (52.41%), Query Frame = 3
Query:  168 KAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTP----AGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLET----SAFALSSGVSSWNAVVFEIVMTFGLVY 578
            +A +AEF + ++F++    + + +   TD  A        G++  + A    +FV V   A ISGGH+NPAVT G F+   ++L+R++LY +AQ LG++  C  +K       T     A  L+ G +    +  EI+ TF LVY
Sbjct:   39 RAVIAEFVATLLFLYVSILTVIGYKAQTDATAGGVDCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTVGLFLARKVSLVRTVLYIVAQCLGAICGCGFVKAFQSSYYTRYGGGANELADGYNKGTGLGAEIIGTFVLVY 183          
BLAST of FC876338 vs. ExPASy Swiss-Prot
Match: MIP_MOUSE (Lens fiber major intrinsic protein OS=Mus musculus GN=Mip PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 7.256e-14
Identity = 51/139 (36.69%), Postives = 70/139 (50.36%), Query Frame = 3
Query:  168 KAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALS---SGVSSWNAVVFEIVMTFGLV 575
            +A  AEFF+ + +VF G G+ + +       A  P  ++  +LA   AL   V    +ISG HVNPAVTF   VG  ++LLR+  Y  AQLLG+V    +L   T        AL+   +GVS   A   EI +T   V
Sbjct:   11 RAIFAEFFATLFYVFFGLGASLRW-------APGPLHVLQVALAFGLALATLVQTVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYIAAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHAGVSVGQATTVEIFLTLQFV 142          
BLAST of FC876338 vs. ExPASy Swiss-Prot
Match: MIP_CANFA (Lens fiber major intrinsic protein OS=Canis familiaris GN=MIP PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.256e-14
Identity = 52/139 (37.41%), Postives = 71/139 (51.08%), Query Frame = 3
Query:  168 KAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSS---GVSSWNAVVFEIVMTFGLV 575
            +A  AEFF+ + +VF G G+ + +   T G    P  ++  +LA   AL   V    +ISG HVNPAVTF   VG  ++LLR+  Y  AQLLG+V    +L   T        AL++   GVS   A   EI +T   V
Sbjct:   11 RAIFAEFFATLFYVFFGLGASLRW---TPG----PLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYMAAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVSVGQATTVEIFLTLQFV 142          
BLAST of FC876338 vs. ExPASy Swiss-Prot
Match: AQP2_MOUSE (Aquaporin-2 OS=Mus musculus GN=Aqp2 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 7.256e-14
Identity = 48/141 (34.04%), Postives = 74/141 (52.48%), Query Frame = 3
Query:  168 KAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFST-----GGLETSAFALSSGVSSWNAVVFEIVMTFGLV 575
            +A LAEF + ++FVF G GS + +       AS+P  ++  ++A    +   V    ++SG H+NPAVT    VG H++ LR+  Y  AQLLG+V    +L   T     G L  +  AL +  ++  AV  E+ +T  LV
Sbjct:   11 RAVLAEFLATLLFVFFGLGSALQW-------ASSPPSVLQIAVAFGLGIGTLVQALGHVSGAHINPAVTVACLVGCHVSFLRAAFYVAAQLLGAVAGAAILHEITPVEIRGDLAVN--ALHNNATAGQAVTVELFLTMQLV 142          
BLAST of FC876338 vs. ExPASy Swiss-Prot
Match: PIP27_ORYSJ (Probable aquaporin PIP2-7 OS=Oryza sativa subsp. japonica GN=PIP2-7 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 9.476e-14
Identity = 47/142 (33.10%), Postives = 78/142 (54.93%), Query Frame = 3
Query:  168 KAALAEFFSMIIFVFAGQGSGMAF-SKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSV----VACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVY 578
            +A +AEF + +IF++    + + + ++     A T  G +  + +    +FV V     +SGGH+NPAVT G F G  ++L+R++LY +AQ LG++    +   ++K     L   A  +S G S+  A+  EIV TF LVY
Sbjct:   44 RALIAEFMATLIFLYVSIATVIGYKNQRATVDACTGVGYLGVAWSFGATIFVLVYCTGGVSGGHINPAVTLGLFFGRKLSLVRTVLYVVAQCLGAIAGAGIVKGIMKRPYDALGGGANTVSDGYSAAGALGAEIVGTFILVY 185          
BLAST of FC876338 vs. ExPASy Swiss-Prot
Match: PIP21_ARATH (Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 9.476e-14
Identity = 51/145 (35.17%), Postives = 77/145 (53.10%), Query Frame = 3
Query:  168 KAALAEFFSMIIFVFAGQGS--GMAFSKLTDGGASTPAGLISASLAHAFA--LFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLET----SAFALSSGVSSWNAVVFEIVMTFGLVY 578
            +A +AEF + ++F++    +  G      TD G     G+    +A AF   +F+ V   A ISGGH+NPAVTFG F+   ++L R++LY IAQ LG++     +K       T     A +L+ G S+   +  EI+ TF LVY
Sbjct:   39 RAVIAEFVATLLFLYITVLTVIGYKIQSDTDAGGVDCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLPRALLYIIAQCLGAICGVGFVKAFQSSYYTRYGGGANSLADGYSTGTGLAAEIIGTFVLVY 183          
BLAST of FC876338 vs. ExPASy Swiss-Prot
Match: MIP_RANPI (Lens fiber major intrinsic protein OS=Rana pipiens PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.111e-13
Identity = 48/139 (34.53%), Postives = 70/139 (50.36%), Query Frame = 3
Query:  168 KAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSS---GVSSWNAVVFEIVMTFGLV 575
            +A  AEFF  + +VF G G+ + +       A+ PA ++  +LA    L   V    ++SG H+NPAVTF   +G  ++L R+I Y  AQLLG+V    +L   T        AL++   GVS   A   EI +T   V
Sbjct:   11 RAVFAEFFGTMFYVFFGLGASLKW-------AAGPANVLVIALAFGLVLATMVQSIGHVSGAHINPAVTFAFLIGSQMSLFRAIFYIAAQLLGAVAGAAVLYGVTPAAIRGNLALNTLHPGVSLGQATTVEIFLTLQFV 142          
BLAST of FC876338 vs. ExPASy Swiss-Prot
Match: PIP26_ORYSJ (Probable aquaporin PIP2-6 OS=Oryza sativa subsp. japonica GN=PIP2-6 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 2.757e-13
Identity = 43/143 (30.07%), Postives = 78/143 (54.55%), Query Frame = 3
Query:  168 KAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLK------FSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVY 578
            +A +AEF + ++F++    + + +   +        G +  + A    +F+ V   A ISGGH+NPAVTFG  +   ++++R+++Y +AQ LG +V   ++K      ++  G    A  ++SG S+  A+  EI+ TF LVY
Sbjct:   38 RALIAEFIATLLFLYITVATVIGYKVQSSADQCGGVGTLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLLLARKVSVIRAVMYIVAQCLGGIVGVGIVKGIMKHQYNANG--GGANMVASGYSTGTALGAEIIGTFVLVY 178          
BLAST of FC876338 vs. ExPASy Swiss-Prot
Match: PIP12_ORYSJ (Probable aquaporin PIP1-2 OS=Oryza sativa subsp. japonica GN=PIP1-2 PE=2 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 2.757e-13
Identity = 57/186 (30.65%), Postives = 89/186 (47.85%), Query Frame = 3
Query:   78 RFSLTKFSIKMPIYRIAIGT---------------PGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLK-FSTGGLETS---AFALSSGVSSWNAVVFEIVMTFGLVY 578
            R    KFS + PI   A G+               PGE       +A +AEF +  +F++    + M  +  T   A+   G+   + +    +F  V   A ISGGH+NPAVTFG F+   ++L R++ Y + Q LG++    ++K F  G  ET+   A  ++ G +  + +  EIV TF LVY
Sbjct:    9 RLGANKFSERQPIGTAAQGSDDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVNNSTSKCATV--GIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFQKGLYETTGGGANVVAPGYTKGDGLGAEIVGTFILVY 192          
BLAST of FC876338 vs. ExPASy Swiss-Prot
Match: MIP_HUMAN (Lens fiber major intrinsic protein OS=Homo sapiens GN=MIP PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.757e-13
Identity = 50/139 (35.97%), Postives = 69/139 (49.64%), Query Frame = 3
Query:  168 KAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSS---GVSSWNAVVFEIVMTFGLV 575
            +A  AEFF+ + +VF G GS + +       A  P  ++  ++A   AL   V    +ISG HVNPAVTF   VG  ++LLR+  Y  AQLLG+V    +L   T        AL++    VS   A   EI +T   V
Sbjct:   11 RAIFAEFFATLFYVFFGLGSSLRW-------APGPLHVLQVAMAFGLALATLVQSVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYMAAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPAVSVGQATTVEIFLTLQFV 142          
The following BLAST results are available for this feature:
BLAST of FC876338 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
PIP24_ARATH7.256e-1432.41Probable aquaporin PIP2-4 OS=Arabidopsis thaliana ... [more]
MIP_MOUSE7.256e-1436.69Lens fiber major intrinsic protein OS=Mus musculus... [more]
MIP_CANFA7.256e-1437.41Lens fiber major intrinsic protein OS=Canis famili... [more]
AQP2_MOUSE7.256e-1434.04Aquaporin-2 OS=Mus musculus GN=Aqp2 PE=2 SV=2[more]
PIP27_ORYSJ9.476e-1433.10Probable aquaporin PIP2-7 OS=Oryza sativa subsp. j... [more]
PIP21_ARATH9.476e-1435.17Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1... [more]
MIP_RANPI2.111e-1334.53Lens fiber major intrinsic protein OS=Rana pipiens... [more]
PIP26_ORYSJ2.757e-1330.07Probable aquaporin PIP2-6 OS=Oryza sativa subsp. j... [more]
PIP12_ORYSJ2.757e-1330.65Probable aquaporin PIP1-2 OS=Oryza sativa subsp. j... [more]
MIP_HUMAN2.757e-1335.97Lens fiber major intrinsic protein OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionC32003E10EF DevOvary1 Citrus clementina cDNA clone C32003E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876338 ID=FC876338; Name=FC876338; organism=Citrus clementina; type=EST; length=578bp
GACCGCTAGGCAATATACAACGGAGCACAAAACAGAGCCAGCAAGCTTGT
AAGAAGCCTTTTGAGCTAAAACAATATCGTTTTTCTTTGACAAAATTTTC
GATAAAAATGCCAATCTACAGAATTGCCATCGGCACGCCGGGAGAGGCAA
GCCATCCTGATGCGTTAAAGGCGGCTCTAGCTGAGTTTTTCTCGATGATT
ATTTTTGTTTTCGCCGGCCAGGGATCCGGGATGGCCTTTAGCAAGCTAAC
GGATGGCGGGGCGTCCACGCCGGCCGGTCTTATATCTGCATCACTGGCTC
ATGCATTTGCCCTATTTGTAGCTGTTTCAGTTGGTGCAAATATTTCTGGG
GGTCACGTGAACCCAGCTGTGACATTTGGTGCATTTGTTGGAGGCCACAT
TACATTGTTGAGGAGCATCCTGTATTGGATTGCACAGTTGCTAGGATCAG
TTGTTGCTTGCTTGCTGCTCAAGTTTTCCACCGGTGGATTGGAAACATCG
GCATTCGCACTATCATCTGGCGTCTCATCATGGAATGCAGTTGTCTTTGA
GATTGTGATGACCTTTGGCTTGGTCTAC
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