FC876339

Overview
NameFC876339
Unique NameFC876339
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length641
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9909 contig Ccv1_Contig9909:8..648. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876339 vs. ExPASy Swiss-Prot
Match: METK1_ATRNU (S-adenosylmethionine synthetase 1 OS=Atriplex nummularia GN=SAMS1 PE=1 SV=2)

HSP 1 Score: 341.273 bits (874), Expect = 2.561e-93
Identity = 163/182 (89.56%), Postives = 171/182 (93.96%), Query Frame = 3
Query:   96 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGA 641
            ++TFLFTSESVNEGHPDKLCDQISDAVLDACL QDPESKVACETCTKTN+VMVFGEITTKA VDYEKIVR TCR IGFVS DVGLDAD+CKVLV IEQQSPDIAQGVHGH ++RPE+IGAGDQGHMFGYATDET E MPLSHVLATKLGARLTEVRKN TC WLRPDGKTQVTVEYYN+NGA
Sbjct:    5 VDTFLFTSESVNEGHPDKLCDQISDAVLDACLAQDPESKVACETCTKTNLVMVFGEITTKANVDYEKIVRQTCRDIGFVSADVGLDADNCKVLVYIEQQSPDIAQGVHGHLSRRPEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCPWLRPDGKTQVTVEYYNENGA 186          
BLAST of FC876339 vs. ExPASy Swiss-Prot
Match: METK4_ARATH (S-adenosylmethionine synthetase 4 OS=Arabidopsis thaliana GN=METK4 PE=1 SV=1)

HSP 1 Score: 340.117 bits (871), Expect = 5.706e-93
Identity = 160/182 (87.91%), Postives = 172/182 (94.51%), Query Frame = 3
Query:   96 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGA 641
            ME+FLFTSESVNEGHPDKLCDQISDA+LDACLEQDPESKVACETCTKTNMVMVFGEITTKA VDYE+IVR TCR IGFVS DVGLDAD+CKVLVNIEQQSPDIAQGVHGH TK+PE++GAGDQGHMFGYATDET E MPL+HVLATKLGA+LTEVRKN TC WLRPDGKTQVT+EY N++GA
Sbjct:    1 MESFLFTSESVNEGHPDKLCDQISDAILDACLEQDPESKVACETCTKTNMVMVFGEITTKANVDYEQIVRKTCREIGFVSADVGLDADNCKVLVNIEQQSPDIAQGVHGHLTKKPEEVGAGDQGHMFGYATDETPELMPLTHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTIEYINESGA 182          
BLAST of FC876339 vs. ExPASy Swiss-Prot
Match: METK2_ATRNU (S-adenosylmethionine synthetase 2 OS=Atriplex nummularia GN=SAMS2 PE=1 SV=1)

HSP 1 Score: 339.347 bits (869), Expect = 9.733e-93
Identity = 162/182 (89.01%), Postives = 171/182 (93.96%), Query Frame = 3
Query:   96 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGA 641
            ++TFLFTSESVNEGHPDKLCDQISDAVLDACL QDPESKVACETCTKTN+VMVFGEITTKA VDYEKIVR TCR IGFVS DVGLDAD+CKVLV IEQQSPDIAQGVHGH ++RPE+IGAGDQGHMFGYA+DET E MPLSHVLATKLGARLTEVRKN TC WLRPDGKTQVTVEYYN+NGA
Sbjct:    5 VDTFLFTSESVNEGHPDKLCDQISDAVLDACLAQDPESKVACETCTKTNLVMVFGEITTKADVDYEKIVRQTCRDIGFVSADVGLDADNCKVLVYIEQQSPDIAQGVHGHLSRRPEEIGAGDQGHMFGYASDETPELMPLSHVLATKLGARLTEVRKNGTCPWLRPDGKTQVTVEYYNENGA 186          
BLAST of FC876339 vs. ExPASy Swiss-Prot
Match: METK4_POPTR (S-adenosylmethionine synthetase 4 OS=Populus trichocarpa GN=METK4 PE=2 SV=1)

HSP 1 Score: 338.961 bits (868), Expect = 1.271e-92
Identity = 160/182 (87.91%), Postives = 170/182 (93.41%), Query Frame = 3
Query:   96 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGA 641
            M+TFLFTSESVNEGHPDKLCDQ+SDA+LDACL QDPESKVACETC+KTNMVMVFGEITTKA VDYEKIVRDTCR IGF S DVGLDAD+CKVLVNIEQQSPDIAQGVHGH TK+PE+IGAGDQGHMFGYATDET E MPL+HVLATKLGA+LTEVRKN TC WLRPDGKTQVTVEY N+ GA
Sbjct:    1 MDTFLFTSESVNEGHPDKLCDQVSDAILDACLAQDPESKVACETCSKTNMVMVFGEITTKANVDYEKIVRDTCRGIGFTSADVGLDADNCKVLVNIEQQSPDIAQGVHGHLTKKPEEIGAGDQGHMFGYATDETPELMPLTHVLATKLGAKLTEVRKNKTCPWLRPDGKTQVTVEYKNEGGA 182          
BLAST of FC876339 vs. ExPASy Swiss-Prot
Match: METK3_HORVU (S-adenosylmethionine synthetase 3 OS=Hordeum vulgare GN=SAM3 PE=2 SV=1)

HSP 1 Score: 335.109 bits (858), Expect = 1.836e-91
Identity = 160/181 (88.40%), Postives = 170/181 (93.92%), Query Frame = 3
Query:   99 ETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGA 641
            ETFLFTSESVNEGHPDKLCDQ+SDAVLDACL QD +SKVACET TKTNMVMV GEITTKA VDYEKIVRDTCR+IGF+SDDVGLDAD CKVLVNIEQQSPDIAQGVHGHFTKRPE++GAGDQG MFGYATDET E MPLSHVLATKLGARLTEVRKN TC+W+RPDGKTQVTVEY N++GA
Sbjct:    4 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDADSKVACETVTKTNMVMVLGEITTKATVDYEKIVRDTCRNIGFISDDVGLDADRCKVLVNIEQQSPDIAQGVHGHFTKRPEEVGAGDQGIMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCAWVRPDGKTQVTVEYLNEDGA 184          
BLAST of FC876339 vs. ExPASy Swiss-Prot
Match: METK_CHLRE (S-adenosylmethionine synthetase OS=Chlamydomonas reinhardtii GN=METM PE=3 SV=1)

HSP 1 Score: 305.834 bits (782), Expect = 1.193e-82
Identity = 145/182 (79.67%), Postives = 160/182 (87.91%), Query Frame = 3
Query:   96 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGA 641
            +E+FL+TSESVNEGHPDK+CDQ+SDAVLDACLEQDP+SKVACETC KT MVMVFGEITTKAKVDYE IVR  C+ IGF S+DVGLDAD CKVLV+IE+QSPDI QGVHG  TK  E+IGAGDQGHMFGYATDET E MPL+HVLAT+LG +LTEVRKN  C WLRPDGKTQVTVEY  + GA
Sbjct:    4 LESFLYTSESVNEGHPDKICDQVSDAVLDACLEQDPDSKVACETCCKTGMVMVFGEITTKAKVDYEAIVRKVCKEIGFTSEDVGLDADKCKVLVHIEEQSPDIGQGVHGMGTKALEEIGAGDQGHMFGYATDETPELMPLTHVLATQLGYKLTEVRKNGVCPWLRPDGKTQVTVEYKREGGA 185          
BLAST of FC876339 vs. ExPASy Swiss-Prot
Match: METK1_PEA (S-adenosylmethionine synthetase 1 (Fragment) OS=Pisum sativum GN=SAMS1 PE=2 SV=2)

HSP 1 Score: 291.967 bits (746), Expect = 1.782e-78
Identity = 138/155 (89.03%), Postives = 147/155 (94.84%), Query Frame = 3
Query:  177 LDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGA 641
            +DACLEQD +SKVACETCTKTN+VMVFGEITTKA VDYEKIVR+TCR+IGFVS DVGLDAD+CKVLVNIEQQSPDIAQGVHGHFTK+PE+IGAGDQGHMFGYATDET E MPLSHVLATKLGARLTEVRKN TC+WLRPDG TQVTVEYYND GA
Sbjct:    3 VDACLEQDSDSKVACETCTKTNLVMVFGEITTKANVDYEKIVRNTCRNIGFVSADVGLDADNCKVLVNIEQQSPDIAQGVHGHFTKKPEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCAWLRPDGNTQVTVEYYNDKGA 157          
BLAST of FC876339 vs. ExPASy Swiss-Prot
Match: METK_OSTLU (S-adenosylmethionine synthetase OS=Ostreococcus lucimarinus (strain CCE9901) GN=METK-1 PE=3 SV=1)

HSP 1 Score: 290.812 bits (743), Expect = 3.970e-78
Identity = 137/179 (76.54%), Postives = 151/179 (84.36%), Query Frame = 3
Query:  105 FLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGA 641
            FLFTSESVNEGHPDKL DQISD +LDACL QDP+SKVACET TKTNMVMVFGEITTKAKVDYE +VR  CR +GF+SD+ GLD + C+VLV +  QSPDI QGVHG  TK  EDIGAGDQGHMFGYATDET E MPL+HVLATKLG RLT VRK+ TC W+ PDGKTQVT+EY N+ GA
Sbjct:    3 FLFTSESVNEGHPDKLADQISDGILDACLAQDPDSKVACETATKTNMVMVFGEITTKAKVDYEAVVRQVCRDVGFISDETGLDGNKCRVLVELHDQSPDIGQGVHGMGTKSDEDIGAGDQGHMFGYATDETPELMPLTHVLATKLGHRLTVVRKDGTCPWVLPDGKTQVTIEYENEGGA 181          
BLAST of FC876339 vs. ExPASy Swiss-Prot
Match: METK_OSTTA (S-adenosylmethionine synthetase OS=Ostreococcus tauri GN=METK PE=3 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 8.844e-78
Identity = 136/179 (75.98%), Postives = 153/179 (85.47%), Query Frame = 3
Query:  105 FLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGA 641
            FLFTSESVNEGHPDKL DQISD +LDACLEQDP+SKVACET TKTNMVMVFGEITTKAKVDYE +VR  CR +GF+S++ GLD ++C+VLV +  QSPDI QGVHG  TK  E+IGAGDQGHMFGYATDET E MPL+HVLATKLG RLT VRK+ TC W+ PDGKTQVT+EY N+ GA
Sbjct:    3 FLFTSESVNEGHPDKLADQISDGILDACLEQDPDSKVACETATKTNMVMVFGEITTKAKVDYEAVVRQVCRDVGFISNETGLDGNNCRVLVELHDQSPDIGQGVHGMGTKSLEEIGAGDQGHMFGYATDETPELMPLTHVLATKLGHRLTVVRKDGTCPWVLPDGKTQVTIEYENEGGA 181          
BLAST of FC876339 vs. ExPASy Swiss-Prot
Match: METK3_ACTCH (S-adenosylmethionine synthetase 3 (Fragment) OS=Actinidia chinensis GN=SAM3 PE=2 SV=1)

HSP 1 Score: 286.574 bits (732), Expect = 7.487e-77
Identity = 134/149 (89.93%), Postives = 142/149 (95.30%), Query Frame = 3
Query:  195 QDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGA 641
            QDP+SKVACETCTKTNMVMVFGEITTK  +DYEKIVRDTCR+IGFVSDDVGLDAD+CKVLVNIEQQSPDIAQGVHGH TKRPE+IGAGDQGHMFGYATDET E MPLSHVLATKLGARLTEVRK+ TC WLRPDGKTQVT+EYYN+NGA
Sbjct:    1 QDPDSKVACETCTKTNMVMVFGEITTKGNIDYEKIVRDTCRNIGFVSDDVGLDADNCKVLVNIEQQSPDIAQGVHGHLTKRPEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKDGTCPWLRPDGKTQVTIEYYNENGA 149          
The following BLAST results are available for this feature:
BLAST of FC876339 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK1_ATRNU2.561e-9389.56S-adenosylmethionine synthetase 1 OS=Atriplex numm... [more]
METK4_ARATH5.706e-9387.91S-adenosylmethionine synthetase 4 OS=Arabidopsis t... [more]
METK2_ATRNU9.733e-9389.01S-adenosylmethionine synthetase 2 OS=Atriplex numm... [more]
METK4_POPTR1.271e-9287.91S-adenosylmethionine synthetase 4 OS=Populus trich... [more]
METK3_HORVU1.836e-9188.40S-adenosylmethionine synthetase 3 OS=Hordeum vulga... [more]
METK_CHLRE1.193e-8279.67S-adenosylmethionine synthetase OS=Chlamydomonas r... [more]
METK1_PEA1.782e-7889.03S-adenosylmethionine synthetase 1 (Fragment) OS=Pi... [more]
METK_OSTLU3.970e-7876.54S-adenosylmethionine synthetase OS=Ostreococcus lu... [more]
METK_OSTTA8.844e-7875.98S-adenosylmethionine synthetase OS=Ostreococcus ta... [more]
METK3_ACTCH7.487e-7789.93S-adenosylmethionine synthetase 3 (Fragment) OS=Ac... [more]

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Properties
Property NameValue
Genbank descriptionC32003E11EF DevOvary1 Citrus clementina cDNA clone C32003E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876339 ID=FC876339; Name=FC876339; organism=Citrus clementina; type=EST; length=641bp
CAAACTCAATTGAGTTCCGCTTTGCTATTGAGGTCTGGTCTTAAGTCTGA
ATCTTAGATCTGCGCCGAAACACTTGCCAGCCACAGCTTGATAAGATGGA
GACCTTTCTATTCACCTCTGAATCTGTGAACGAGGGTCACCCCGACAAGT
TGTGCGACCAGATCTCTGATGCGGTGCTTGACGCCTGCCTTGAGCAGGAT
CCTGAGAGCAAGGTTGCCTGTGAGACATGCACCAAGACCAACATGGTCAT
GGTCTTTGGAGAGATTACCACCAAGGCCAAGGTAGACTATGAGAAGATTG
TTCGCGACACTTGCCGTTCCATTGGATTTGTTTCTGATGATGTGGGTCTT
GACGCCGATCACTGCAAAGTCCTGGTCAATATTGAGCAACAAAGCCCGGA
TATTGCCCAGGGTGTTCATGGCCACTTTACAAAGCGCCCTGAGGACATTG
GTGCTGGTGACCAGGGCCATATGTTTGGTTATGCTACTGATGAGACCTCT
GAATTTATGCCTTTGAGCCATGTCCTTGCCACCAAACTTGGTGCTCGTCT
CACGGAGGTTAGGAAGAATAGTACCTGCTCTTGGCTAAGGCCCGATGGGA
AGACCCAGGTCACTGTTGAGTACTACAACGACAATGGTGCC
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