FC876345

Overview
NameFC876345
Unique NameFC876345
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length551
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9339 contig Ccv1_Contig9339:811..1360. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC876345 vs. ExPASy Swiss-Prot
Match: EF1A_PEA (Elongation factor 1-alpha OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 333.954 bits (855), Expect = 2.980e-91
Identity = 162/183 (88.52%), Postives = 174/183 (95.08%), Query Frame = 1 
Query:    1 KIGGIGTAPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSPIALKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVDTFSDYPPLGRFAVRDMRHTAAVGV 549
            KIGGIGT PVGRVETGV+KPGM+VTF P+GLTTEVKSVEMHHEAL EALPGDNV FNVKNVAVKDLK G VASNSKDDPA++AANFTSQVIIMNHPGQIGNGYAPVLDCHTS IA+KF+EL+TKIDRRSGKE+EKEPKFLKNGDAGMVKMIPTKPMVV+TF++YPPLGRFAVRDMR T AVGV
Sbjct:  243 KIGGIGTVPVGRVETGVVKPGMLVTFAPTGLTTEVKSVEMHHEALTEALPGDNVRFNVKNVAVKDLKHGLVASNSKDDPAKDAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELITKIDRRSGKEIEKEPKFLKNGDAGMVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGV 425
[Close]
BLAST of FC876345 vs. ExPASy Swiss-Prot
Match: EF1A1_DAUCA (Elongation factor 1-alpha OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 333.183 bits (853), Expect = 5.083e-91
Identity = 162/183 (88.52%), Postives = 175/183 (95.63%), Query Frame = 1 
Query:    1 KIGGIGTAPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSPIALKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVDTFSDYPPLGRFAVRDMRHTAAVGV 549
            KIGGIGT PVGRVETG +KPGMVVTFGPSGLTTEVKSVEMHHE+L EALPGDNVGFNVKNV+VKDLKRG+VASNSKDDPA+ AA+FTSQVIIMNHPGQIGNGYAPVLDCHTS IA+KF+EL+TKIDRRSGKELEKEPKFLKNGDAGMVKM+PTKPMVV+TF++YPPLGRFAVR MR T AVGV
Sbjct:  243 KIGGIGTVPVGRVETGTIKPGMVVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELLTKIDRRSGKELEKEPKFLKNGDAGMVKMLPTKPMVVETFAEYPPLGRFAVRVMRQTVAVGV 425
[Close]
BLAST of FC876345 vs. ExPASy Swiss-Prot
Match: EF1A2_HORVU (Elongation factor 1-alpha OS=Hordeum vulgare GN=BLT63 PE=1 SV=1)

HSP 1 Score: 330.872 bits (847), Expect = 2.523e-90
Identity = 161/183 (87.98%), Postives = 172/183 (93.99%), Query Frame = 1 
Query:    1 KIGGIGTAPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSPIALKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVDTFSDYPPLGRFAVRDMRHTAAVGV 549
            KIGGIGT PVGRVETGV+KPGMVVTFGP+GLTTEVKSVEMHHE+L EALPGDNVGFNVKNVAVKDLKRG+VASNSKDDPA+EAANFT+QVIIMNHPGQI NGYAPVLDCHTS IA+KF+E+ TKIDRRSGKELE  PKFLKNGDAG VKMIPTKPMVV+TF+ YPPLGRFAVRDMR T AVGV
Sbjct:  243 KIGGIGTVPVGRVETGVIKPGMVVTFGPTGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAANFTAQVIIMNHPGQISNGYAPVLDCHTSHIAVKFAEIQTKIDRRSGKELEAAPKFLKNGDAGFVKMIPTKPMVVETFAQYPPLGRFAVRDMRQTVAVGV 425
[Close]
BLAST of FC876345 vs. ExPASy Swiss-Prot
Match: EF1A1_HORVU (Elongation factor 1-alpha OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 329.331 bits (843), Expect = 7.341e-90
Identity = 160/183 (87.43%), Postives = 172/183 (93.99%), Query Frame = 1 
Query:    1 KIGGIGTAPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSPIALKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVDTFSDYPPLGRFAVRDMRHTAAVGV 549
            KIGGIGT PVGRVETGV+KPGMVVTFGP+GLTTEVKSVE+HHE+L EALPGDNVGFNVKNVAVKDLKRG+VASNSKDDPA+EAANFT+QVIIMNHPGQI NGYAPVLDCHTS IA+KF+E+ TKIDRRSGKELE  PKFLKNGDAG VKMIPTKPMVV+TF+ YPPLGRFAVRDMR T AVGV
Sbjct:  243 KIGGIGTVPVGRVETGVIKPGMVVTFGPTGLTTEVKSVEVHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAANFTAQVIIMNHPGQISNGYAPVLDCHTSHIAVKFAEIQTKIDRRSGKELEAAPKFLKNGDAGFVKMIPTKPMVVETFAQYPPLGRFAVRDMRQTVAVGV 425
[Close]
BLAST of FC876345 vs. ExPASy Swiss-Prot
Match: EF1A2_XENLA (Elongation factor 1-alpha, oocyte form OS=Xenopus laevis GN=eef1ao PE=1 SV=1)

HSP 1 Score: 295.434 bits (755), Expect = 1.175e-79
Identity = 142/183 (77.60%), Postives = 163/183 (89.07%), Query Frame = 1 
Query:    1 KIGGIGTAPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSPIALKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVDTFSDYPPLGRFAVRDMRHTAAVGV 549
            KIGGIGT PVGRVETGVLKPGM+VTF PS +TTEVKSVEMHHEALQEALPGDNVGFNVKN++VKD++RG VA +SK+DP  +A +FT+QVII+NHPGQI  GYAPVLDCHT+ IA KF+EL  KIDRRSGK+LE +PKFLK+GDA +V+MIP KPM V++FSDYPPLGRFAVRDMR T AVGV
Sbjct:  255 KIGGIGTVPVGRVETGVLKPGMIVTFAPSNVTTEVKSVEMHHEALQEALPGDNVGFNVKNISVKDIRRGNVAGDSKNDPPMQAGSFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKQKIDRRSGKKLEDDPKFLKSGDAAIVEMIPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGV 437
[Close]
BLAST of FC876345 vs. ExPASy Swiss-Prot
Match: EF1A3_XENLA (Elongation factor 1-alpha, oocyte form OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 294.278 bits (752), Expect = 2.617e-79
Identity = 142/183 (77.60%), Postives = 162/183 (88.52%), Query Frame = 1 
Query:    1 KIGGIGTAPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSPIALKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVDTFSDYPPLGRFAVRDMRHTAAVGV 549
            KIGGIGT PVGRVETGVLKPGM+VTF PS +TTEVKSVEMHHEAL EALPGDNVGFNVKN++VKD++RG VA +SK+DP  +A +FT+QVII+NHPGQI  GYAPVLDCHT+ IA KF+EL  KIDRRSGK+LE +PKFLK+GDA +V+MIP KPM V+TFSDYPPLGRFAVRDMR T AVGV
Sbjct:  255 KIGGIGTVPVGRVETGVLKPGMIVTFAPSNVTTEVKSVEMHHEALVEALPGDNVGFNVKNISVKDIRRGNVAGDSKNDPPMQAGSFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKQKIDRRSGKKLEDDPKFLKSGDAAIVEMIPGKPMCVETFSDYPPLGRFAVRDMRQTVAVGV 437
[Close]
BLAST of FC876345 vs. ExPASy Swiss-Prot
Match: EF1A_ONCVO (Elongation factor 1-alpha OS=Onchocerca volvulus PE=2 SV=1)

HSP 1 Score: 291.967 bits (746), Expect = 1.299e-78
Identity = 137/183 (74.86%), Postives = 161/183 (87.98%), Query Frame = 1 
Query:    1 KIGGIGTAPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSPIALKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVDTFSDYPPLGRFAVRDMRHTAAVGV 549
            KIGGIGT PVGRVETG+LKPGM+VTF P  LTTEVKSVEMHHEALQEALPGDNVGFNVKN+++KD++RG VAS+SK+DPA+E   FT+QVIIMNHPGQI  GY PVLDCHT+ IA KF+EL  K+DRRSGK++E  PK LK+GDAG++ +IPTKP+ V+TF++YPPLGRFAVRDMR T AVGV
Sbjct:  255 KIGGIGTVPVGRVETGILKPGMIVTFAPQNLTTEVKSVEMHHEALQEALPGDNVGFNVKNISIKDIRRGSVASDSKNDPAKETKMFTAQVIIMNHPGQISAGYTPVLDCHTAHIACKFAELKEKVDRRSGKKVEDNPKSLKSGDAGIIDLIPTKPLCVETFTEYPPLGRFAVRDMRQTVAVGV 437
[Close]
BLAST of FC876345 vs. ExPASy Swiss-Prot
Match: EF1A_ORYLA (Elongation factor 1-alpha OS=Oryzias latipes GN=eef1a PE=2 SV=1)

HSP 1 Score: 291.582 bits (745), Expect = 1.696e-78
Identity = 138/183 (75.41%), Postives = 162/183 (88.52%), Query Frame = 1 
Query:    1 KIGGIGTAPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSPIALKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVDTFSDYPPLGRFAVRDMRHTAAVGV 549
            KIGGIGT PVGRVETGVLKPGMVVTF P  LTTEVKSVEMHHE+L EA+PGDNVGFN+KNV+VK+++RG+VA +SK+DP + AA+F +QVII+NHPGQI  GYAPVLDCHT+ IA KF+EL+ KIDRRSGK+LE  PKF+K+GDA +VK+IP KPMVV+ FS+YPPLGRFAVRDMR T AVGV
Sbjct:  255 KIGGIGTVPVGRVETGVLKPGMVVTFAPPNLTTEVKSVEMHHESLPEAVPGDNVGFNIKNVSVKEIRRGYVAGDSKNDPPKAAASFNAQVIILNHPGQINQGYAPVLDCHTAHIACKFNELIEKIDRRSGKKLEDNPKFVKSGDAAIVKLIPQKPMVVEPFSNYPPLGRFAVRDMRQTVAVGV 437
[Close]
BLAST of FC876345 vs. ExPASy Swiss-Prot
Match: EF1A_CHICK (Elongation factor 1-alpha 1 OS=Gallus gallus GN=EEF1A PE=2 SV=1)

HSP 1 Score: 291.582 bits (745), Expect = 1.696e-78
Identity = 144/183 (78.69%), Postives = 159/183 (86.89%), Query Frame = 1 
Query:    1 KIGGIGTAPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSPIALKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVDTFSDYPPLGRFAVRDMRHTAAVGV 549
            KIGGIGT PVGRVETGVLKPGMVVTF P  +TTEVKSVEMHHEAL EALPGDNVGFNVKNV+VKD++RG VA +SK+DP  EAA FT+QVII+NHPGQI  GYAPVLDCHT+ IA KF+EL  KIDRRSGK+LE  PKFLK+GDA +V MIP KPM V++FSDYPPLGRFAVRDMR T AVGV
Sbjct:  255 KIGGIGTVPVGRVETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMIPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGV 437
[Close]
BLAST of FC876345 vs. ExPASy Swiss-Prot
Match: EF1A1_RAT (Elongation factor 1-alpha 1 OS=Rattus norvegicus GN=Eef1a1 PE=2 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 2.215e-78
Identity = 143/183 (78.14%), Postives = 159/183 (86.89%), Query Frame = 1 
Query:    1 KIGGIGTAPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSPIALKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVDTFSDYPPLGRFAVRDMRHTAAVGV 549
            KIGGIGT PVGRVETGVLKPGMVVTF P  +TTEVKSVEMHHEAL EALPGDNVGFNVKNV+VKD++RG VA +SK+DP  EAA FT+QVII+NHPGQI  GYAPVLDCHT+ IA KF+EL  KIDRRSGK+LE  PKFLK+GDA +V M+P KPM V++FSDYPPLGRFAVRDMR T AVGV
Sbjct:  255 KIGGIGTVPVGRVETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGV 437
The following BLAST results are available for this feature:
BLAST of FC876345 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 178
Match NameE-valueIdentityDescription
EF1A_PEA2.980e-9188.52Elongation factor 1-alpha OS=Pisum sativum PE=2 SV... [more]
EF1A1_DAUCA5.083e-9188.52Elongation factor 1-alpha OS=Daucus carota PE=3 SV... [more]
EF1A2_HORVU2.523e-9087.98Elongation factor 1-alpha OS=Hordeum vulgare GN=BL... [more]
EF1A1_HORVU7.341e-9087.43Elongation factor 1-alpha OS=Hordeum vulgare PE=1 ... [more]
EF1A2_XENLA1.175e-7977.60Elongation factor 1-alpha, oocyte form OS=Xenopus ... [more]
EF1A3_XENLA2.617e-7977.60Elongation factor 1-alpha, oocyte form OS=Xenopus ... [more]
EF1A_ONCVO1.299e-7874.86Elongation factor 1-alpha OS=Onchocerca volvulus P... [more]
EF1A_ORYLA1.696e-7875.41Elongation factor 1-alpha OS=Oryzias latipes GN=ee... [more]
EF1A_CHICK1.696e-7878.69Elongation factor 1-alpha 1 OS=Gallus gallus GN=EE... [more]
EF1A1_RAT2.215e-7878.14Elongation factor 1-alpha 1 OS=Rattus norvegicus G... [more]

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Properties
Property NameValue
Genbank descriptionC32003F10EF DevOvary1 Citrus clementina cDNA clone C32003F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876345 ID=FC876345; Name=FC876345; organism=Citrus clementina; type=EST; length=551bp
AAGATTGGTGGCATTGGAACCGCCCCAGTGGGTCGCGTTGAGACCGGTGT
CCTCAAGCCTGGTATGGTGGTGACATTTGGCCCCTCTGGATTGACAACTG
AGGTTAAGTCTGTTGAGATGCACCACGAAGCTCTGCAGGAGGCCCTTCCG
GGTGACAATGTTGGTTTCAACGTGAAGAACGTTGCTGTCAAGGATCTCAA
GCGTGGTTTTGTTGCTTCCAACTCGAAGGATGATCCGGCCAGGGAAGCTG
CCAACTTCACCTCACAGGTCATCATCATGAACCACCCTGGCCAGATTGGA
AATGGATATGCCCCAGTGCTTGACTGCCACACCTCCCCGATTGCCCTCAA
GTTTTCTGAGCTCGTGACGAAGATTGATAGGCGATCAGGCAAGGAGCTTG
AGAAGGAGCCCAAGTTCTTGAAGAATGGAGACGCCGGAATGGTTAAGATG
ATTCCCACCAAGCCCATGGTTGTTGATACCTTCTCCGATTACCCACCCCT
TGGTCGTTTTGCTGTTAGGGACATGCGTCACACTGCTGCTGTGGGTGTTA
T
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