FC876345

Overview
NameFC876345
Unique NameFC876345
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length551
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9339 contig Ccv1_Contig9339:811..1360. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876345 vs. ExPASy Swiss-Prot
Match: EF1A_RHYAM (Elongation factor 1-alpha (Fragment) OS=Rhynchosciara americana PE=2 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 1.177e-71
Identity = 125/183 (68.31%), Postives = 154/183 (84.15%), Query Frame = 1
Query:    1 KIGGIGTAPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSPIALKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVDTFSDYPPLGRFAVRDMRHTAAVGV 549
            KIGGIGT PVGR+ETG+LKPG VV F P+ +TTEVKSVEMHHEAL EA+PGDNVGFNVKNV+VK+L+RG+VA +SK +P + A NFT+QVI++NHPGQI NGY PVLDCHT+ IA KF+E+  K+DRRSGK  E  PK +K+GDA +V + P+KP+ V++F ++PPLGRFAVRDMR T AVGV
Sbjct:  204 KIGGIGTVPVGRLETGILKPGTVVVFAPANITTEVKSVEMHHEALTEAVPGDNVGFNVKNVSVKELRRGYVAGDSKANPPKGAENFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKXKVDRRSGKSTEDNPKAIKSGDAAIVILQPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGV 386          
BLAST of FC876345 vs. ExPASy Swiss-Prot
Match: EF1A_DICDI (Elongation factor 1-alpha OS=Dictyostelium discoideum GN=eef1a1 PE=1 SV=2)

HSP 1 Score: 265.774 bits (678), Expect = 9.967e-71
Identity = 127/186 (68.28%), Postives = 155/186 (83.33%), Query Frame = 1
Query:    1 KIGGIGTAPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSPIALKFSELVTKIDRRSGKELEKE---PKFLKNGDAGMVKMIPTKPMVVDTFSDYPPLGRFAVRDMRHTAAVGV 549
            KIGGIGT PVGRVETG++KPGMVVTF P+GL+TEVKSVEMHHE L EA PGDNVGFNVKNV+VK++KRG VA +SK+DP +E   F +QVI++NHPGQI  GY+PVLDCHT+ IA KF+E+V K+DRR+G  + KE      LKNGDA MV++ P++PM V++F++YPPLGRFAVRDMR T AVGV
Sbjct:  243 KIGGIGTVPVGRVETGIIKPGMVVTFAPAGLSTEVKSVEMHHEQLPEARPGDNVGFNVKNVSVKEIKRGMVAGDSKNDPPQETEKFVAQVIVLNHPGQIHAGYSPVLDCHTAHIACKFTEIVDKVDRRTGAVVAKEGTAAVVLKNGDAAMVELTPSRPMCVESFTEYPPLGRFAVRDMRQTVAVGV 428          
BLAST of FC876345 vs. ExPASy Swiss-Prot
Match: EF1A1_EUPCR (Elongation factor 1-alpha 1 OS=Euplotes crassus GN=EFA1 PE=3 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 8.438e-70
Identity = 123/183 (67.21%), Postives = 149/183 (81.42%), Query Frame = 1
Query:    1 KIGGIGTAPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSPIALKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVDTFSDYPPLGRFAVRDMRHTAAVGV 549
            KIGGIGT PVGRVETGVLK GMV+TF P G + E KSVEMHHE + EA PG+NVGFNVK ++VKD+KRGFVAS+SK+DPA +  +F S  I+MNHPG+I  GY PV+DCHT+ IA KF EL+TK D+RSGK  E+ PKFLK GDAG++++ P+KP+ V+TF+ Y PLGRFAVRDMR T AVGV
Sbjct:  243 KIGGIGTVPVGRVETGVLKAGMVITFAPKGCSAECKSVEMHHEEVPEAAPGNNVGFNVKGLSVKDIKRGFVASDSKNDPATDTESFVSHTIVMNHPGEIKAGYTPVIDCHTAHIACKFEELLTKADKRSGKMTEENPKFLKAGDAGLIRLSPSKPLCVETFATYAPLGRFAVRDMRQTVAVGV 425          
BLAST of FC876345 vs. ExPASy Swiss-Prot
Match: EF1A_TETPY (Elongation factor 1-alpha OS=Tetrahymena pyriformis PE=2 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 1.439e-69
Identity = 124/183 (67.76%), Postives = 149/183 (81.42%), Query Frame = 1
Query:    1 KIGGIGTAPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSPIALKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVDTFSDYPPLGRFAVRDMRHTAAVGV 549
            KIGGIGT PVGRVETGV+KPGM + F P+ +  E KSVEMHHE L EA+PGDNVGFN+K V+VKD++RG VAS++K+DPA+EAA F SQVIIMNHPGQI  GY PVLDCHT+ IA KF  +  KIDRR+GK  E+ PKF+KNGDA +V +IPTK + V+ F +YPPLGR+AVRDM+ T AVGV
Sbjct:  244 KIGGIGTVPVGRVETGVIKPGMSIQFAPNKVIAECKSVEMHHEQLPEAVPGDNVGFNIKGVSVKDIRRGNVASDAKNDPAKEAATFYSQVIIMNHPGQIQAGYTPVLDCHTAHIACKFETIHDKIDRRTGKSQEENPKFIKNGDAALVTLIPTKALCVEVFQEYPPLGRYAVRDMKQTVAVGV 426          
BLAST of FC876345 vs. ExPASy Swiss-Prot
Match: EF1A_SPOFR (Elongation factor 1-alpha (Fragment) OS=Spodoptera frugiperda PE=1 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 4.188e-69
Identity = 117/173 (67.63%), Postives = 150/173 (86.71%), Query Frame = 1
Query:    1 KIGGIGTAPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSPIALKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVDTFSDYPPLGRFAVR 519
            KIGGIGT PVGRVETG+LKPG +V F P+ +TTEVKSVEMHHEALQEA+PGDNVGFNVKNV+VK+L+RG+VA +SK++P + AA+FT+QVI++NHPGQI NGY PVLDCHT+ IA KF+E+  K+DRR+GK  E  PK +K+GDA +V ++P+KP+ V++F ++PPLGRFAVR
Sbjct:  241 KIGGIGTVPVGRVETGILKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of FC876345 vs. ExPASy Swiss-Prot
Match: EF1A_HELZE (Elongation factor 1-alpha (Fragment) OS=Heliothis zea PE=3 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 4.188e-69
Identity = 117/173 (67.63%), Postives = 150/173 (86.71%), Query Frame = 1
Query:    1 KIGGIGTAPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSPIALKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVDTFSDYPPLGRFAVR 519
            KIGGIGT PVGRVETG+LKPG +V F P+ +TTEVKSVEMHHEALQEA+PGDNVGFNVKNV+VK+L+RG+VA +SK++P + AA+FT+QVI++NHPGQI NGY PVLDCHT+ IA KF+E+  K+DRR+GK  E  PK +K+GDA +V ++P+KP+ V++F ++PPLGRFAVR
Sbjct:  241 KIGGIGTVPVGRVETGILKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of FC876345 vs. ExPASy Swiss-Prot
Match: EF1A_HELVI (Elongation factor 1-alpha (Fragment) OS=Heliothis virescens PE=3 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 4.188e-69
Identity = 117/173 (67.63%), Postives = 150/173 (86.71%), Query Frame = 1
Query:    1 KIGGIGTAPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSPIALKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVDTFSDYPPLGRFAVR 519
            KIGGIGT PVGRVETG+LKPG +V F P+ +TTEVKSVEMHHEALQEA+PGDNVGFNVKNV+VK+L+RG+VA +SK++P + AA+FT+QVI++NHPGQI NGY PVLDCHT+ IA KF+E+  K+DRR+GK  E  PK +K+GDA +V ++P+KP+ V++F ++PPLGRFAVR
Sbjct:  241 KIGGIGTVPVGRVETGILKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of FC876345 vs. ExPASy Swiss-Prot
Match: EF1A_HELGL (Elongation factor 1-alpha (Fragment) OS=Helicoverpa gelotopoeon PE=3 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 4.188e-69
Identity = 117/173 (67.63%), Postives = 150/173 (86.71%), Query Frame = 1
Query:    1 KIGGIGTAPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSPIALKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVDTFSDYPPLGRFAVR 519
            KIGGIGT PVGRVETG+LKPG +V F P+ +TTEVKSVEMHHEALQEA+PGDNVGFNVKNV+VK+L+RG+VA +SK++P + AA+FT+QVI++NHPGQI NGY PVLDCHT+ IA KF+E+  K+DRR+GK  E  PK +K+GDA +V ++P+KP+ V++F ++PPLGRFAVR
Sbjct:  241 KIGGIGTVPVGRVETGILKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of FC876345 vs. ExPASy Swiss-Prot
Match: EF1A_HELDI (Elongation factor 1-alpha (Fragment) OS=Heliocheilus discalis PE=3 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 4.188e-69
Identity = 117/173 (67.63%), Postives = 150/173 (86.71%), Query Frame = 1
Query:    1 KIGGIGTAPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSPIALKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVDTFSDYPPLGRFAVR 519
            KIGGIGT PVGRVETG+LKPG +V F P+ +TTEVKSVEMHHEALQEA+PGDNVGFNVKNV+VK+L+RG+VA +SK++P + AA+FT+QVI++NHPGQI NGY PVLDCHT+ IA KF+E+  K+DRR+GK  E  PK +K+GDA +V ++P+KP+ V++F ++PPLGRFAVR
Sbjct:  241 KIGGIGTVPVGRVETGILKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of FC876345 vs. ExPASy Swiss-Prot
Match: EF1A_HELAM (Elongation factor 1-alpha (Fragment) OS=Helicoverpa armigera PE=3 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 4.188e-69
Identity = 117/173 (67.63%), Postives = 150/173 (86.71%), Query Frame = 1
Query:    1 KIGGIGTAPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSPIALKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVDTFSDYPPLGRFAVR 519
            KIGGIGT PVGRVETG+LKPG +V F P+ +TTEVKSVEMHHEALQEA+PGDNVGFNVKNV+VK+L+RG+VA +SK++P + AA+FT+QVI++NHPGQI NGY PVLDCHT+ IA KF+E+  K+DRR+GK  E  PK +K+GDA +V ++P+KP+ V++F ++PPLGRFAVR
Sbjct:  241 KIGGIGTVPVGRVETGILKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
The following BLAST results are available for this feature:
BLAST of FC876345 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 178
Match NameE-valueIdentityDescription
EF1A_RHYAM1.177e-7168.31Elongation factor 1-alpha (Fragment) OS=Rhynchosci... [more]
EF1A_DICDI9.967e-7168.28Elongation factor 1-alpha OS=Dictyostelium discoid... [more]
EF1A1_EUPCR8.438e-7067.21Elongation factor 1-alpha 1 OS=Euplotes crassus GN... [more]
EF1A_TETPY1.439e-6967.76Elongation factor 1-alpha OS=Tetrahymena pyriformi... [more]
EF1A_SPOFR4.188e-6967.63Elongation factor 1-alpha (Fragment) OS=Spodoptera... [more]
EF1A_HELZE4.188e-6967.63Elongation factor 1-alpha (Fragment) OS=Heliothis ... [more]
EF1A_HELVI4.188e-6967.63Elongation factor 1-alpha (Fragment) OS=Heliothis ... [more]
EF1A_HELGL4.188e-6967.63Elongation factor 1-alpha (Fragment) OS=Helicoverp... [more]
EF1A_HELDI4.188e-6967.63Elongation factor 1-alpha (Fragment) OS=Heliocheil... [more]
EF1A_HELAM4.188e-6967.63Elongation factor 1-alpha (Fragment) OS=Helicoverp... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32003F10EF DevOvary1 Citrus clementina cDNA clone C32003F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876345 ID=FC876345; Name=FC876345; organism=Citrus clementina; type=EST; length=551bp
AAGATTGGTGGCATTGGAACCGCCCCAGTGGGTCGCGTTGAGACCGGTGT
CCTCAAGCCTGGTATGGTGGTGACATTTGGCCCCTCTGGATTGACAACTG
AGGTTAAGTCTGTTGAGATGCACCACGAAGCTCTGCAGGAGGCCCTTCCG
GGTGACAATGTTGGTTTCAACGTGAAGAACGTTGCTGTCAAGGATCTCAA
GCGTGGTTTTGTTGCTTCCAACTCGAAGGATGATCCGGCCAGGGAAGCTG
CCAACTTCACCTCACAGGTCATCATCATGAACCACCCTGGCCAGATTGGA
AATGGATATGCCCCAGTGCTTGACTGCCACACCTCCCCGATTGCCCTCAA
GTTTTCTGAGCTCGTGACGAAGATTGATAGGCGATCAGGCAAGGAGCTTG
AGAAGGAGCCCAAGTTCTTGAAGAATGGAGACGCCGGAATGGTTAAGATG
ATTCCCACCAAGCCCATGGTTGTTGATACCTTCTCCGATTACCCACCCCT
TGGTCGTTTTGCTGTTAGGGACATGCGTCACACTGCTGCTGTGGGTGTTA
T
back to top