FC876345

Overview
NameFC876345
Unique NameFC876345
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length551
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9339 contig Ccv1_Contig9339:811..1360. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876345 vs. ExPASy Swiss-Prot
Match: EF1A_HELAL (Elongation factor 1-alpha (Fragment) OS=Heliocheilus albipunctella PE=3 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 4.188e-69
Identity = 117/173 (67.63%), Postives = 150/173 (86.71%), Query Frame = 1
Query:    1 KIGGIGTAPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSPIALKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVDTFSDYPPLGRFAVR 519
            KIGGIGT PVGRVETG+LKPG +V F P+ +TTEVKSVEMHHEALQEA+PGDNVGFNVKNV+VK+L+RG+VA +SK++P + AA+FT+QVI++NHPGQI NGY PVLDCHT+ IA KF+E+  K+DRR+GK  E  PK +K+GDA +V ++P+KP+ V++F ++PPLGRFAVR
Sbjct:  241 KIGGIGTVPVGRVETGILKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of FC876345 vs. ExPASy Swiss-Prot
Match: EF1A_ENTHI (Elongation factor 1-alpha OS=Entamoeba histolytica PE=2 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 4.188e-69
Identity = 121/184 (65.76%), Postives = 154/184 (83.70%), Query Frame = 1
Query:    1 KIGGIGTAPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSPIALKFSELVTKIDRRSGKELE-KEPKFLKNGDAGMVKMIPTKPMVVDTFSDYPPLGRFAVRDMRHTAAVGV 549
            KI GIGT PVGRVETG+LKPG +V F PSG+++E KS+EMHH AL +A+PGDNVGFNV+N+ VKD+KRG VAS++K+ PA    +FT+QVI+MNHPGQI  GY PVLDCHTS IA KF EL++KIDRR+GK +E  EP+++KNGD+ +VK++PTKP+ V+ F+ +PPLGRFAVRDM+ T AVGV
Sbjct:  241 KISGIGTVPVGRVETGILKPGTIVQFAPSGVSSECKSIEMHHTALAQAIPGDNVGFNVRNLTVKDIKRGNVASDAKNQPAVGCEDFTAQVIVMNHPGQIRKGYTPVLDCHTSHIACKFEELLSKIDRRTGKSMEGGEPEYIKNGDSALVKIVPTKPLCVEEFAKFPPLGRFAVRDMKQTVAVGV 424          
BLAST of FC876345 vs. ExPASy Swiss-Prot
Match: EF1A_ANIIF (Elongation factor 1-alpha (Fragment) OS=Anicla infecta PE=3 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 4.188e-69
Identity = 117/173 (67.63%), Postives = 150/173 (86.71%), Query Frame = 1
Query:    1 KIGGIGTAPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSPIALKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVDTFSDYPPLGRFAVR 519
            KIGGIGT PVGRVETG+LKPG +V F P+ +TTEVKSVEMHHEALQEA+PGDNVGFNVKNV+VK+L+RG+VA +SK++P + AA+FT+QVI++NHPGQI NGY PVLDCHT+ IA KF+E+  K+DRR+GK  E  PK +K+GDA +V ++P+KP+ V++F ++PPLGRFAVR
Sbjct:  241 KIGGIGTVPVGRVETGILKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of FC876345 vs. ExPASy Swiss-Prot
Match: EF1A_ADIBE (Elongation factor 1-alpha (Fragment) OS=Adisura bella PE=3 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 4.188e-69
Identity = 117/173 (67.63%), Postives = 150/173 (86.71%), Query Frame = 1
Query:    1 KIGGIGTAPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSPIALKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVDTFSDYPPLGRFAVR 519
            KIGGIGT PVGRVETG+LKPG +V F P+ +TTEVKSVEMHHEALQEA+PGDNVGFNVKNV+VK+L+RG+VA +SK++P + AA+FT+QVI++NHPGQI NGY PVLDCHT+ IA KF+E+  K+DRR+GK  E  PK +K+GDA +V ++P+KP+ V++F ++PPLGRFAVR
Sbjct:  241 KIGGIGTVPVGRVETGILKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of FC876345 vs. ExPASy Swiss-Prot
Match: EF1A_PLAFK (Elongation factor 1-alpha OS=Plasmodium falciparum (isolate K1 / Thailand) GN=MEF-1 PE=3 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 1.218e-68
Identity = 118/183 (64.48%), Postives = 154/183 (84.15%), Query Frame = 1
Query:    1 KIGGIGTAPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSPIALKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVDTFSDYPPLGRFAVRDMRHTAAVGV 549
            KIGGIGT PVGRVETG+LK GMV+ F PS + +E KSVEMH E L+EA PGDN+GFNVKNV+VK++KRG+VAS++K++PA+  + FT+QVII+NHPG+I NGY P+LDCHTS I+ KF  + +KID+RSGK +E+ PK +K+GD+ +V + P KPMVV+TF++YPPLGRFA+RDMR T AVG+
Sbjct:  241 KIGGIGTVPVGRVETGILKAGMVLNFAPSAVVSECKSVEMHKEVLEEARPGDNIGFNVKNVSVKEIKRGYVASDTKNEPAKGCSKFTAQVIILNHPGEIKNGYTPLLDCHTSHISCKFLNIDSKIDKRSGKVVEENPKAIKSGDSALVSLEPKKPMVVETFTEYPPLGRFAIRDMRQTIAVGI 423          
BLAST of FC876345 vs. ExPASy Swiss-Prot
Match: EF1A1_XENLA (Elongation factor 1-alpha OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 253.062 bits (645), Expect = 6.686e-67
Identity = 118/183 (64.48%), Postives = 145/183 (79.23%), Query Frame = 1
Query:    1 KIGGIGTAPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSPIALKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVDTFSDYPPLGRFAVRDMRHTAAVGV 549
            KIGGIGT PVG++ETG+LKPGM ++F PSG + EVKS+EMHHE LQ A PG N+GFNVKN+AVK LKRG VA NSK DP  EA++FT+QVII+NHPG I  GY+PV+DCHT+ I  +F+EL  KIDRR+GK+LE  P  LK+GDA ++ + P KP  V+ F DYPPLGRFA RD++ T AVGV
Sbjct:  258 KIGGIGTVPVGKIETGILKPGMTISFAPSGFSAEVKSIEMHHEPLQMAFPGFNIGFNVKNIAVKSLKRGNVAGNSKSDPPTEASSFTAQVIILNHPGFIKAGYSPVIDCHTAHITCQFAELQEKIDRRTGKKLEDNPGLLKSGDAAIITLKPIKPFCVERFFDYPPLGRFAARDLKQTVAVGV 440          
BLAST of FC876345 vs. ExPASy Swiss-Prot
Match: EF1A_BLAHO (Elongation factor 1-alpha OS=Blastocystis hominis PE=2 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 2.629e-63
Identity = 113/183 (61.75%), Postives = 147/183 (80.33%), Query Frame = 1
Query:    1 KIGGIGTAPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSPIALKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVDTFSDYPPLGRFAVRDMRHTAAVGV 549
            KIGGIGT PVGRVETGVLKPGM VTF P  ++TEVKSVEMHHE++ +ALPGDNVGFNV NV+V+D+ RG V  ++K+DP  +  +  +QVI+MNHP  I  GY PV+DCHT+ IA KF ++++++D+R+GK L + P  +KNG + M +++P+KPM V+TFSDYPPLGRFAVRDMR T AVG+
Sbjct:  245 KIGGIGTVPVGRVETGVLKPGMTVTFAPVNVSTEVKSVEMHHESIPQALPGDNVGFNVNNVSVEDIHRGNVCGDAKNDPPCKTES-DAQVIVMNHPSGIRPGYCPVVDCHTAHIACKFEKIMSEMDKRTGKVLRENPDIVKNGKSMMAQLVPSKPMCVETFSDYPPLGRFAVRDMRQTVAVGI 426          
BLAST of FC876345 vs. ExPASy Swiss-Prot
Match: EF1A2_EUPCR (Elongation factor 1-alpha 2 OS=Euplotes crassus GN=EFA2 PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 7.667e-55
Identity = 105/183 (57.38%), Postives = 138/183 (75.41%), Query Frame = 1
Query:    1 KIGGIGTAPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSPIALKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVDTFSDYPPLGRFAVRDMRHTAAVGV 549
            KI GIGT PVGRVETGVLK GM V F  +G T+EVKS+E HH  L+EA PG NVGFNV+ +  K++K G V  ++K+DP + A +F +QVI+MNHPG I  GY PVLD HT+ +A KF  L++K + R+GK +E+ PKFLKNG++G+V+++PTKP+ V+ FS Y  LGRF +RDM+ T AVGV
Sbjct:  242 KIAGIGTVPVGRVETGVLKRGMEVQF-TTGATSEVKSLEAHHNKLEEAEPGLNVGFNVR-LEAKEIKAGHVCGDAKNDPPKNAESFIAQVIVMNHPGHIKAGYQPVLDIHTAHVATKFKTLLSKNEARTGKLIEEAPKFLKNGESGIVELVPTKPLCVEEFSKYAALGRFVIRDMKRTVAVGV 422          
BLAST of FC876345 vs. ExPASy Swiss-Prot
Match: EF1A_ARCFU (Elongation factor 1-alpha OS=Archaeoglobus fulgidus GN=tuf PE=3 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.353e-51
Identity = 96/182 (52.75%), Postives = 132/182 (72.53%), Query Frame = 1
Query:    4 IGGIGTAPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSPIALKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVDTFSDYPPLGRFAVRDMRHTAAVGV 549
            I G+GT PVGRVE+GVL+ G  V F P+G++ EVKS+EMHHE +QEA PGDN+GFNV+ V+ KD++RG VA +  D+P     +FT+Q++++ HP  I  GY PV+  HT+ IA +F EL  KID R+G+  E+ P+FLK GDA +VK+ PT+PMV++   D PP+GRFA+RDM  T   G+
Sbjct:  235 ISGVGTVPVGRVESGVLRVGDKVVFEPAGVSGEVKSIEMHHEPIQEAYPGDNIGFNVRGVSKKDIRRGDVAGHP-DNPPTVVKDFTAQLVVLQHPTAITVGYTPVVHAHTAQIACRFVELQKKIDPRTGQVKEENPQFLKTGDAAIVKLEPTRPMVIERVKDIPPMGRFAIRDMGMTIGAGM 415          
BLAST of FC876345 vs. ExPASy Swiss-Prot
Match: EF1A_METJA (Elongation factor 1-alpha OS=Methanocaldococcus jannaschii GN=tuf PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 1.768e-51
Identity = 95/182 (52.20%), Postives = 131/182 (71.98%), Query Frame = 1
Query:    4 IGGIGTAPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSPIALKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVDTFSDYPPLGRFAVRDMRHTAAVGV 549
            I G+GT PVGRVETG+L+PG  V F P+G++ EVKS+EMHHE + +A PGDN+GFNV+ V+ KD+KRG V  +  D+P   A  FT+Q++++ HP  I  GY PV   HT+ +A  F EL+ K+D R+G+ +E+ P+FLK GDA +VK+ PTKPMV++   + P LGRFA+RDM  T A G+
Sbjct:  239 ITGVGTVPVGRVETGILRPGDKVVFEPAGVSGEVKSIEMHHEQIPQAEPGDNIGFNVRGVSKKDIKRGDVCGHP-DNPPTVAEEFTAQIVVLQHPTAITVGYTPVFHAHTAQVACTFIELLKKLDPRTGQVIEENPQFLKTGDAAIVKIKPTKPMVIENVREIPQLGRFAIRDMGMTIAAGM 419          
The following BLAST results are available for this feature:
BLAST of FC876345 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 178
Match NameE-valueIdentityDescription
EF1A_HELAL4.188e-6967.63Elongation factor 1-alpha (Fragment) OS=Heliocheil... [more]
EF1A_ENTHI4.188e-6965.76Elongation factor 1-alpha OS=Entamoeba histolytica... [more]
EF1A_ANIIF4.188e-6967.63Elongation factor 1-alpha (Fragment) OS=Anicla inf... [more]
EF1A_ADIBE4.188e-6967.63Elongation factor 1-alpha (Fragment) OS=Adisura be... [more]
EF1A_PLAFK1.218e-6864.48Elongation factor 1-alpha OS=Plasmodium falciparum... [more]
EF1A1_XENLA6.686e-6764.48Elongation factor 1-alpha OS=Xenopus laevis PE=1 S... [more]
EF1A_BLAHO2.629e-6361.75Elongation factor 1-alpha OS=Blastocystis hominis ... [more]
EF1A2_EUPCR7.667e-5557.38Elongation factor 1-alpha 2 OS=Euplotes crassus GN... [more]
EF1A_ARCFU1.353e-5152.75Elongation factor 1-alpha OS=Archaeoglobus fulgidu... [more]
EF1A_METJA1.768e-5152.20Elongation factor 1-alpha OS=Methanocaldococcus ja... [more]

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Properties
Property NameValue
Genbank descriptionC32003F10EF DevOvary1 Citrus clementina cDNA clone C32003F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876345 ID=FC876345; Name=FC876345; organism=Citrus clementina; type=EST; length=551bp
AAGATTGGTGGCATTGGAACCGCCCCAGTGGGTCGCGTTGAGACCGGTGT
CCTCAAGCCTGGTATGGTGGTGACATTTGGCCCCTCTGGATTGACAACTG
AGGTTAAGTCTGTTGAGATGCACCACGAAGCTCTGCAGGAGGCCCTTCCG
GGTGACAATGTTGGTTTCAACGTGAAGAACGTTGCTGTCAAGGATCTCAA
GCGTGGTTTTGTTGCTTCCAACTCGAAGGATGATCCGGCCAGGGAAGCTG
CCAACTTCACCTCACAGGTCATCATCATGAACCACCCTGGCCAGATTGGA
AATGGATATGCCCCAGTGCTTGACTGCCACACCTCCCCGATTGCCCTCAA
GTTTTCTGAGCTCGTGACGAAGATTGATAGGCGATCAGGCAAGGAGCTTG
AGAAGGAGCCCAAGTTCTTGAAGAATGGAGACGCCGGAATGGTTAAGATG
ATTCCCACCAAGCCCATGGTTGTTGATACCTTCTCCGATTACCCACCCCT
TGGTCGTTTTGCTGTTAGGGACATGCGTCACACTGCTGCTGTGGGTGTTA
T
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