FC876347

Overview
NameFC876347
Unique NameFC876347
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length628
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876347_ssr12 microsatellite FC876347_ssr12:12..25. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10254 contig Ccv1_Contig10254:2..629. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876347 vs. ExPASy Swiss-Prot
Match: SAHH2_ARATH (Adenosylhomocysteinase 2 OS=Arabidopsis thaliana GN=SAHH2 PE=1 SV=1)

HSP 1 Score: 284.263 bits (726), Expect = 3.569e-76
Identity = 135/166 (81.33%), Postives = 144/166 (86.75%), Query Frame = 2
Query:  128 MALSVEKSASGREFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHEGVKAEEIYEKTGKLPDP 625
            MAL VEK++SGRE+KVKD+SQADFGRLEIELAEVEMPGL++C  EFGPSQP KGA+ITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDH              WKGETLQEYWWCTE+ALDWGPGGGPDLIVDDGGDATLLIHEGVKAEEI+ K G  PDP
Sbjct:    1 MALLVEKTSSGREYKVKDMSQADFGRLEIELAEVEMPGLVSCVTEFGPSQPLKGARITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSAAVFAWKGETLQEYWWCTERALDWGPGGGPDLIVDDGGDATLLIHEGVKAEEIFAKNGTFPDP 166          
BLAST of FC876347 vs. ExPASy Swiss-Prot
Match: SAHH_SOLLC (Adenosylhomocysteinase OS=Solanum lycopersicum GN=SAHH PE=2 SV=1)

HSP 1 Score: 280.411 bits (716), Expect = 5.153e-75
Identity = 136/166 (81.93%), Postives = 142/166 (85.54%), Query Frame = 2
Query:  128 MALSVEKSASGREFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHEGVKAEEIYEKTGKLPDP 625
            MAL VEK+ SGRE+KVKD+SQADFGRLEIELAEVEMPGLMA RAEFGPSQP KGAKIT SLHMTIQTA LIETLTALGAEVRWCSCNIFSTQDH              WKGETLQEYWWCTE+ALDWGPGGGPDLIVDDGGDATLLIHEGVKAEE + K G +PDP
Sbjct:    1 MALLVEKTTSGREYKVKDMSQADFGRLEIELAEVEMPGLMASRAEFGPSQPVKGAKITCSLHMTIQTAFLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSAAVFAWKGETLQEYWWCTERALDWGPGGGPDLIVDDGGDATLLIHEGVKAEEEFAKNGTVPDP 166          
BLAST of FC876347 vs. ExPASy Swiss-Prot
Match: SAHH_STRGG (Adenosylhomocysteinase OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=ahcY PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 1.972e-50
Identity = 102/166 (61.45%), Postives = 117/166 (70.48%), Query Frame = 2
Query:  161 REFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDH---------XXXXXXXXXXXXXXWKGETLQEYWWCTEKALDW--GPGGGPDLIVDDGGDATLLIHEGVKAEEIYEKTGKLPDP 625
            ++FKV DLS A FGR EI LAE EMPGLM+ R EF  +QP  GA+ITGSLHMT+QTAVLIETL ALGAEVRW SCNIFSTQDH                       WKGETL+EYWWCTE+AL W   P GGP++I+DDGGDATLL+H+GV+    +EK G  PDP
Sbjct:    8 QDFKVADLSLAPFGRKEITLAEHEMPGLMSIRKEFAAAQPLAGARITGSLHMTVQTAVLIETLVALGAEVRWASCNIFSTQDHAAAAIAVGPNGTPEAPAGVPVFAWKGETLEEYWWCTEQALTWPNTPTGGPNMILDDGGDATLLVHKGVE----FEKAGAAPDP 169          
BLAST of FC876347 vs. ExPASy Swiss-Prot
Match: SAHH_STRAZ (Adenosylhomocysteinase OS=Streptomyces atroolivaceus GN=ahcY PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 1.972e-50
Identity = 97/153 (63.40%), Postives = 114/153 (74.51%), Query Frame = 2
Query:  164 EFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHEGVKAEEIYEKTGKLPD 622
            +FKV DLS A FGR EI LAE EMPGLM+ R E+  +QP  GA+ITGSLHMT+QTAVLIETL ALGA+VRW SCNI+STQDH              WKGETL+EYWWCTE+AL W    GP++I+DDGGDATLL+H+GV+    Y KTG LP+
Sbjct:   11 DFKVADLSLAAFGRKEITLAEHEMPGLMSIREEYAAAQPLAGARITGSLHMTVQTAVLIETLVALGADVRWVSCNIYSTQDHAAAAIAAAGIPVFAWKGETLEEYWWCTEQALTWPGHTGPNMILDDGGDATLLVHKGVE----YRKTGILPE 159          
BLAST of FC876347 vs. ExPASy Swiss-Prot
Match: SAHH_STRAW (Adenosylhomocysteinase OS=Streptomyces avermitilis GN=ahcY PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 4.393e-50
Identity = 100/164 (60.98%), Postives = 118/164 (71.95%), Query Frame = 2
Query:  161 REFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDH---------XXXXXXXXXXXXXXWKGETLQEYWWCTEKALDW--GPGGGPDLIVDDGGDATLLIHEGVKAEEIYEKTGKLP 619
            ++FKV DLS A+FGR EI LAE EMPGLM+ R E+  +QP  GA++TGSLHMT+QTAVLIETL ALGAEVRW SCNIFSTQDH                       WKGETL+EYWWCTE+AL W   P GGP++I+DDGGDATLL+H+GV+    YEK GK+P
Sbjct:    8 QDFKVADLSLAEFGRKEITLAEHEMPGLMSIRKEYAEAQPLAGARVTGSLHMTVQTAVLIETLVALGAEVRWASCNIFSTQDHAAAAIAVGPNGTPDNPQGVPVFAWKGETLEEYWWCTEQALTWPNTPTGGPNMILDDGGDATLLVHKGVE----YEKDGKVP 167          
BLAST of FC876347 vs. ExPASy Swiss-Prot
Match: SAHH_STRCO (Adenosylhomocysteinase OS=Streptomyces coelicolor GN=ahcY PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 5.737e-50
Identity = 101/164 (61.59%), Postives = 117/164 (71.34%), Query Frame = 2
Query:  161 REFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDH---------XXXXXXXXXXXXXXWKGETLQEYWWCTEKALDW--GPGGGPDLIVDDGGDATLLIHEGVKAEEIYEKTGKLP 619
            ++FKV DLS A FGR EI LAE EMPGLMA R E+  +QP  GA++TGSLHMT+QTAVLIETL ALGAEVRW SCNIFSTQDH                       WKGETL+EYWWCTE+AL W   P GGP++I+DDGGDATLL+H+GV+    YEK GK+P
Sbjct:    8 QDFKVADLSLAAFGRKEITLAEHEMPGLMAIRKEYAEAQPLAGARVTGSLHMTVQTAVLIETLVALGAEVRWASCNIFSTQDHAAAAIAVGPNGTPDNPQGVPVFAWKGETLEEYWWCTEQALTWPNTPTGGPNMILDDGGDATLLVHKGVE----YEKDGKVP 167          
BLAST of FC876347 vs. ExPASy Swiss-Prot
Match: SAHH_STRAA (Adenosylhomocysteinase OS=Streptomyces argillaceus GN=ahcY PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.669e-49
Identity = 100/168 (59.52%), Postives = 118/168 (70.24%), Query Frame = 2
Query:  149 SASGREFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDH---------XXXXXXXXXXXXXXWKGETLQEYWWCTEKALDW--GPGGGPDLIVDDGGDATLLIHEGVKAEEIYEKTGKLP 619
            SA   +FKV DLS A+FGR EI LAE EMPGLM+ R E+  +QP  GA++TGSLHMT+QTAVLIETL ALGA+VRW SCNIFSTQ H                       WKGETL+EYWWCTE+AL W   P GGP++I+DDGGDATLL+H+GV+    YEK GK+P
Sbjct:    2 SADFTDFKVADLSLAEFGRKEITLAEHEMPGLMSIRREYAEAQPLAGARVTGSLHMTVQTAVLIETLVALGAQVRWASCNIFSTQGHAAAAIAVGPDGTPDNPRAVPVFAWKGETLEEYWWCTEQALTWPDSPTGGPNMILDDGGDATLLVHKGVE----YEKDGKVP 165          
BLAST of FC876347 vs. ExPASy Swiss-Prot
Match: SAHH_DESAD (Adenosylhomocysteinase OS=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=ahcY PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 3.719e-49
Identity = 94/150 (62.67%), Postives = 112/150 (74.67%), Query Frame = 2
Query:  146 KSASGREFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDH-XXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHEGVKAEE 592
            K  S  ++KV D+S AD+G  E++L+E EMPGLM+ R ++G  +P KG K+ GSLHMTIQTA+LIETL ALGA++RW SCNIFSTQDH               WKGETL+EYWWCTE+AL W  G GPDLIVDDGGDATLLIH GVKAE+
Sbjct:    3 KVDSKLDYKVADISLADWGNKEMQLSEREMPGLMSIREKYGKEKPLKGLKVMGSLHMTIQTAMLIETLHALGADIRWASCNIFSTQDHAAAAIAANGTAKVFAWKGETLEEYWWCTEQALTWPDGSGPDLIVDDGGDATLLIHHGVKAEK 152          
BLAST of FC876347 vs. ExPASy Swiss-Prot
Match: SAHH_BACFR (Adenosylhomocysteinase OS=Bacteroides fragilis GN=ahcY PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 8.284e-49
Identity = 92/141 (65.25%), Postives = 109/141 (77.30%), Query Frame = 2
Query:  167 FKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHEGVKAE 589
            +KV D++ ADFGR EI+LAE EMPGLMA R ++G S+P KGA+I GSLHMTIQTAVLIETL ALGAEVRWCSCNI+STQDH              WKGETL +YWWCT +AL++  G GP +IVDDGGDAT++IH G +AE
Sbjct:   26 YKVADITLADFGRKEIDLAEKEMPGLMALREKYGESKPLKGARIMGSLHMTIQTAVLIETLVALGAEVRWCSCNIYSTQDHAAAAIAASGVAVFAWKGETLADYWWCTLQALNFEGGKGPTVIVDDGGDATMMIHVGYEAE 166          
BLAST of FC876347 vs. ExPASy Swiss-Prot
Match: SAHH_PLAYO (Adenosylhomocysteinase OS=Plasmodium yoelii yoelii GN=PY02893 PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.413e-48
Identity = 91/154 (59.09%), Postives = 113/154 (73.38%), Query Frame = 2
Query:  170 KVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDH-XXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGG-GPDLIVDDGGDATLLIHEGVKAEEIYEKTGKLPDP 625
            K+KDLS A FG+L++E++E EMPG+M  R E+   +PFKGAKITG LHMTI+TA+LIETL  LGA +RWCSCNIFST D+               W+GETL+EYWWC EKAL WG  G GPDLIVDDG DA+ L+H+G + E++YE+   LPDP
Sbjct:    7 KIKDLSLAPFGKLQMEISETEMPGIMTIREEYEKLKPFKGAKITGCLHMTIETALLIETLQKLGARIRWCSCNIFSTLDYAAAAVSTLENVSVFAWRGETLEEYWWCVEKALTWGENGEGPDLIVDDGADASYLVHKGAEYEKLYEEKKILPDP 160          
The following BLAST results are available for this feature:
BLAST of FC876347 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
SAHH2_ARATH3.569e-7681.33Adenosylhomocysteinase 2 OS=Arabidopsis thaliana G... [more]
SAHH_SOLLC5.153e-7581.93Adenosylhomocysteinase OS=Solanum lycopersicum GN=... [more]
SAHH_STRGG1.972e-5061.45Adenosylhomocysteinase OS=Streptomyces griseus sub... [more]
SAHH_STRAZ1.972e-5063.40Adenosylhomocysteinase OS=Streptomyces atroolivace... [more]
SAHH_STRAW4.393e-5060.98Adenosylhomocysteinase OS=Streptomyces avermitilis... [more]
SAHH_STRCO5.737e-5061.59Adenosylhomocysteinase OS=Streptomyces coelicolor ... [more]
SAHH_STRAA1.669e-4959.52Adenosylhomocysteinase OS=Streptomyces argillaceus... [more]
SAHH_DESAD3.719e-4962.67Adenosylhomocysteinase OS=Desulfovibrio salexigens... [more]
SAHH_BACFR8.284e-4965.25Adenosylhomocysteinase OS=Bacteroides fragilis GN=... [more]
SAHH_PLAYO1.413e-4859.09Adenosylhomocysteinase OS=Plasmodium yoelii yoelii... [more]

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Properties
Property NameValue
Genbank descriptionC32003G01EF DevOvary1 Citrus clementina cDNA clone C32003G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876347 ID=FC876347; Name=FC876347; organism=Citrus clementina; type=EST; length=628bp
GGCTCACCCCACTCTCTCTCTCTCTCGCTTGTACAATCATTCACTTTGTT
TGGTTAGTTTCCAAAGAGAGAGTAGATTGCCCTCTCTTCCTTCTTTCTTT
TAGATCTATCAATTCTATTAATCAACCATGGCTTTGTCCGTCGAGAAATC
CGCTAGCGGTCGTGAATTCAAGGTGAAGGATCTGTCCCAGGCTGACTTCG
GCCGCCTCGAAATCGAGTTGGCCGAAGTCGAAATGCCGGGGCTCATGGCT
TGCCGCGCCGAGTTCGGCCCTTCACAGCCTTTCAAAGGAGCCAAGATCAC
CGGTTCACTCCACATGACCATCCAGACGGCCGTCCTCATCGAGACACTCA
CCGCTCTCGGCGCCGAAGTCCGCTGGTGCTCCTGCAACATCTTCTCAACC
CAAGACCACGCGGCCGCCGCCATCGCACGTGACTCCGCCTCCGTCTTTGC
CTGGAAGGGTGAGACCCTCCAGGAGTACTGGTGGTGCACGGAGAAAGCCC
TGGACTGGGGTCCCGGCGGCGGCCCAGATCTCATCGTCGATGACGGTGGT
GACGCCACGTTGTTGATCCACGAGGGAGTCAAAGCTGAGGAGATCTACGA
GAAGACCGGGAAGTTGCCCGACCCGGNC
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