FC876347

Overview
NameFC876347
Unique NameFC876347
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length628
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876347_ssr12 microsatellite FC876347_ssr12:12..25. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10254 contig Ccv1_Contig10254:2..629. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876347 vs. ExPASy Swiss-Prot
Match: SAHH_PLAF7 (Adenosylhomocysteinase OS=Plasmodium falciparum (isolate 3D7) GN=PFE1050w PE=1 SV=2)

HSP 1 Score: 192.586 bits (488), Expect = 1.413e-48
Identity = 90/155 (58.06%), Postives = 113/155 (72.90%), Query Frame = 2
Query:  170 KVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDH-XXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPG--GGPDLIVDDGGDATLLIHEGVKAEEIYEKTGKLPDP 625
            KVKD+S A FG++++E++E EMPGLM  R E+G  QP K AKITG LHMT++ A+LIETL  LGA++RWCSCNI+ST D+               WK ETL+EYWWC E AL WG G   GPD+IVDDGGDATLL+H+GV+ E++YE+   LPDP
Sbjct:    7 KVKDISLAPFGKMQMEISENEMPGLMRIREEYGKDQPLKNAKITGCLHMTVECALLIETLQKLGAQIRWCSCNIYSTADYAAAAVSTLENVTVFAWKNETLEEYWWCVESALTWGDGDDNGPDMIVDDGGDATLLVHKGVEYEKLYEEKNILPDP 161          
BLAST of FC876347 vs. ExPASy Swiss-Prot
Match: SAHH_DESDG (Adenosylhomocysteinase OS=Desulfovibrio desulfuricans (strain G20) GN=ahcY PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.413e-48
Identity = 94/144 (65.28%), Postives = 109/144 (75.69%), Query Frame = 2
Query:  164 EFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDH-XXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHEGVKAEE 592
            E KVKDLSQADFG  E++L+E EMPGLM   A+ G  +P KG K+TGSLHMTIQTA+LI+TL  LGA++RW SCNIFSTQDH               WKGETL+EYWWCTE AL W  G GPDLIVDDGGDAT+LIH+GV+AE+
Sbjct:   15 ENKVKDLSQADFGYKEMQLSEREMPGLMELIAKHGAEKPLKGLKVTGSLHMTIQTAMLIKTLYELGADIRWASCNIFSTQDHAAAAIADSGMAKVFAWKGETLEEYWWCTEMALTWPDGSGPDLIVDDGGDATMLIHKGVEAEK 158          
BLAST of FC876347 vs. ExPASy Swiss-Prot
Match: SAHH_BACTN (Adenosylhomocysteinase OS=Bacteroides thetaiotaomicron GN=ahcY PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.148e-48
Identity = 91/141 (64.54%), Postives = 108/141 (76.60%), Query Frame = 2
Query:  167 FKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHEGVKAE 589
            +KV D++ ADFGR EI+LAE EMPGLMA R ++G S+P KGA+I GSLHMTIQTAVLIETL ALGAEVRWCSCNI+STQDH              WKGE L +YWWCT +AL++  G GP++IVDDGGDAT++IH G  AE
Sbjct:   15 YKVADITLADFGRKEIDLAEKEMPGLMALREKYGESKPLKGARIMGSLHMTIQTAVLIETLVALGAEVRWCSCNIYSTQDHAAAAIAASGVAVFAWKGENLADYWWCTLQALNFPGGKGPNVIVDDGGDATMMIHVGYDAE 155          
BLAST of FC876347 vs. ExPASy Swiss-Prot
Match: SAHH_CHLL2 (Adenosylhomocysteinase OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=ahcY PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.562e-47
Identity = 93/156 (59.62%), Postives = 111/156 (71.15%), Query Frame = 2
Query:  152 ASGREFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHEGVKAEEIYEKTGKLP 619
            A+   +KV D++ A++GR EIE+AE EMPGLMA R ++   +P KGA+ITGSLHMTIQTAVLIETL  LGAEVRW SCNIFSTQDH              WKGE+L EYWWCT + L++  G GP+LIVDDGGDATL+IH G K E   E   K+P
Sbjct:    5 ATALAYKVADITLAEWGRKEIEIAEKEMPGLMATRRKYAGQKPLKGARITGSLHMTIQTAVLIETLVDLGAEVRWASCNIFSTQDHAAAAIAAAGIPVFAWKGESLDEYWWCTRQILEFEDGKGPNLIVDDGGDATLMIHLGYKIENNPELLEKVP 160          
BLAST of FC876347 vs. ExPASy Swiss-Prot
Match: SAHH_PLACH (Adenosylhomocysteinase OS=Plasmodium chabaudi GN=PC000295.02.0 PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.665e-47
Identity = 89/154 (57.79%), Postives = 113/154 (73.38%), Query Frame = 2
Query:  170 KVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDH-XXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGG-GPDLIVDDGGDATLLIHEGVKAEEIYEKTGKLPDP 625
            K+KDLS A FG+L++E++E EMPGLM  R E+   +P KGAKITG LHMTI+TA+L+ETL  LGA++RWCSCNI+ST D+               W+GETL+EYWWC EKAL WG  G GPDLIVDDG DA+ L+H+G + E++YE+   LPDP
Sbjct:    7 KIKDLSLAPFGKLQMEISETEMPGLMTIREEYEKLKPLKGAKITGCLHMTIETALLMETLQKLGAKLRWCSCNIYSTLDYAAAAVSTLENVSVFAWRGETLEEYWWCVEKALTWGENGEGPDLIVDDGADASYLVHKGAEYEKLYEEKKILPDP 160          
BLAST of FC876347 vs. ExPASy Swiss-Prot
Match: SAHH_RHOPT (Adenosylhomocysteinase OS=Rhodopseudomonas palustris (strain TIE-1) GN=ahcY PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 7.754e-47
Identity = 90/147 (61.22%), Postives = 107/147 (72.79%), Query Frame = 2
Query:  149 SASGREFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHEGVKAE 589
            +A   ++ VKD+  A+FGR EI LAE EMPGLMA R E+GP QP KGAKI GSLHMTIQTAVLIETL ALGAEVRW SCNI+STQDH               KGETL++YW  T K  DW  GG P++I+DDGGDAT+ +H+G++AE
Sbjct:    2 TAKFTDYIVKDIGLAEFGRKEISLAETEMPGLMATREEYGPKQPLKGAKIAGSLHMTIQTAVLIETLVALGAEVRWVSCNIYSTQDHAAAAIAAAGIPVFAVKGETLKDYWDYTAKLFDWSDGGTPNMILDDGGDATMFVHQGLRAE 148          
BLAST of FC876347 vs. ExPASy Swiss-Prot
Match: SAHH_RHOPA (Adenosylhomocysteinase OS=Rhodopseudomonas palustris GN=ahcY PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 7.754e-47
Identity = 90/147 (61.22%), Postives = 107/147 (72.79%), Query Frame = 2
Query:  149 SASGREFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHEGVKAE 589
            +A   ++ VKD+  A+FGR EI LAE EMPGLMA R E+GP QP KGAKI GSLHMTIQTAVLIETL ALGAEVRW SCNI+STQDH               KGETL++YW  T K  DW  GG P++I+DDGGDAT+ +H+G++AE
Sbjct:    2 TAKFTDYIVKDIGLAEFGRKEISLAETEMPGLMATREEYGPKQPLKGAKIAGSLHMTIQTAVLIETLVALGAEVRWVSCNIYSTQDHAAAAIAAAGIPVFAVKGETLKDYWDYTAKLFDWSDGGTPNMILDDGGDATMFVHQGLRAE 148          
BLAST of FC876347 vs. ExPASy Swiss-Prot
Match: SAHH_PELLD (Adenosylhomocysteinase OS=Pelodictyon luteolum (strain DSM 273) GN=ahcY PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 3.848e-46
Identity = 88/146 (60.27%), Postives = 107/146 (73.29%), Query Frame = 2
Query:  152 ASGREFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHEGVKAE 589
            A+   +KV D+S A++GR EI++AE EMPGLMA R ++   +P KGA++ GSLHMTIQTAVLIETL  LGA+VRW SCNIFSTQDH              WKGETL++YWWCT + LD+G G GP+LIVDDGGDATL+I  G K E
Sbjct:    5 ATALAYKVADISLAEWGRKEIDIAEKEMPGLMAIRKKYAGQKPLKGARVAGSLHMTIQTAVLIETLVDLGADVRWASCNIFSTQDHAAAAIAATGVPVFAWKGETLEDYWWCTRQILDFGDGQGPNLIVDDGGDATLMIILGYKIE 150          
BLAST of FC876347 vs. ExPASy Swiss-Prot
Match: SAHH_PELPB (Adenosylhomocysteinase OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=ahcY PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 5.026e-46
Identity = 92/152 (60.53%), Postives = 107/152 (70.39%), Query Frame = 2
Query:  164 EFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHEGVKAEEIYEKTGKLP 619
            ++KV DLS A++GR EI++AE EMPGLMA R ++    P KGA+I GSLHMTIQTAVLIETL  LGAEVRW SCNIFSTQDH              WKGETL+EYWWCT + L++  G GP+LIVDDGGDATL+I  G K E   E   K P
Sbjct:    9 DYKVADLSLAEWGRKEIDVAEKEMPGLMATRRKYAGQYPLKGARIAGSLHMTIQTAVLIETLVELGAEVRWASCNIFSTQDHAAAAIAKSGVPVFAWKGETLEEYWWCTRQILEFEGGKGPNLIVDDGGDATLMIILGYKIENNPELLEKAP 160          
BLAST of FC876347 vs. ExPASy Swiss-Prot
Match: SAHH_CHLPD (Adenosylhomocysteinase OS=Chlorobium phaeobacteroides (strain DSM 266) GN=ahcY PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 8.573e-46
Identity = 88/141 (62.41%), Postives = 103/141 (73.05%), Query Frame = 2
Query:  167 FKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHEGVKAE 589
            +KV D+S A++GR EI++AE EMPGLMA R ++   +P KGA+I GSLHMTIQTAVLIETL  LGA+VRW SCNIFSTQDH              WKGETL EYWWCT + L++  G GP LIVDDGGDATL+IH G K E
Sbjct:   10 YKVADMSLAEWGRKEIDIAEKEMPGLMATRKKYAGQKPLKGARIAGSLHMTIQTAVLIETLVELGADVRWASCNIFSTQDHAAAAIAKAGIPVFAWKGETLDEYWWCTRQILEFEGGKGPHLIVDDGGDATLMIHLGYKIE 150          
The following BLAST results are available for this feature:
BLAST of FC876347 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
SAHH_PLAF71.413e-4858.06Adenosylhomocysteinase OS=Plasmodium falciparum (i... [more]
SAHH_DESDG1.413e-4865.28Adenosylhomocysteinase OS=Desulfovibrio desulfuric... [more]
SAHH_BACTN3.148e-4864.54Adenosylhomocysteinase OS=Bacteroides thetaiotaomi... [more]
SAHH_CHLL21.562e-4759.62Adenosylhomocysteinase OS=Chlorobium limicola (str... [more]
SAHH_PLACH2.665e-4757.79Adenosylhomocysteinase OS=Plasmodium chabaudi GN=P... [more]
SAHH_RHOPT7.754e-4761.22Adenosylhomocysteinase OS=Rhodopseudomonas palustr... [more]
SAHH_RHOPA7.754e-4761.22Adenosylhomocysteinase OS=Rhodopseudomonas palustr... [more]
SAHH_PELLD3.848e-4660.27Adenosylhomocysteinase OS=Pelodictyon luteolum (st... [more]
SAHH_PELPB5.026e-4660.53Adenosylhomocysteinase OS=Pelodictyon phaeoclathra... [more]
SAHH_CHLPD8.573e-4662.41Adenosylhomocysteinase OS=Chlorobium phaeobacteroi... [more]

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Properties
Property NameValue
Genbank descriptionC32003G01EF DevOvary1 Citrus clementina cDNA clone C32003G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876347 ID=FC876347; Name=FC876347; organism=Citrus clementina; type=EST; length=628bp
GGCTCACCCCACTCTCTCTCTCTCTCGCTTGTACAATCATTCACTTTGTT
TGGTTAGTTTCCAAAGAGAGAGTAGATTGCCCTCTCTTCCTTCTTTCTTT
TAGATCTATCAATTCTATTAATCAACCATGGCTTTGTCCGTCGAGAAATC
CGCTAGCGGTCGTGAATTCAAGGTGAAGGATCTGTCCCAGGCTGACTTCG
GCCGCCTCGAAATCGAGTTGGCCGAAGTCGAAATGCCGGGGCTCATGGCT
TGCCGCGCCGAGTTCGGCCCTTCACAGCCTTTCAAAGGAGCCAAGATCAC
CGGTTCACTCCACATGACCATCCAGACGGCCGTCCTCATCGAGACACTCA
CCGCTCTCGGCGCCGAAGTCCGCTGGTGCTCCTGCAACATCTTCTCAACC
CAAGACCACGCGGCCGCCGCCATCGCACGTGACTCCGCCTCCGTCTTTGC
CTGGAAGGGTGAGACCCTCCAGGAGTACTGGTGGTGCACGGAGAAAGCCC
TGGACTGGGGTCCCGGCGGCGGCCCAGATCTCATCGTCGATGACGGTGGT
GACGCCACGTTGTTGATCCACGAGGGAGTCAAAGCTGAGGAGATCTACGA
GAAGACCGGGAAGTTGCCCGACCCGGNC
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