FC876347

Overview
NameFC876347
Unique NameFC876347
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length628
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876347_ssr12 microsatellite FC876347_ssr12:12..25. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10254 contig Ccv1_Contig10254:2..629. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876347 vs. ExPASy Swiss-Prot
Match: SAHH_MYCUA (Adenosylhomocysteinase OS=Mycobacterium ulcerans (strain Agy99) GN=ahcY PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.112e-44
Identity = 91/165 (55.15%), Postives = 112/165 (67.88%), Query Frame = 2
Query:  155 SGREFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDH---------XXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGP-DLIVDDGGDATLLIHEGVKAEEIYEKTGKLP 619
            +G +FK+ DLS ADFGR E+ +AE EMPGLM+ R E+   QP KGA+I+GSLHMT+QTAVLIETLTALGAEVRW SCNIFSTQDH                       WKGE+L+EYWWC E+ L W     P ++I+DDGGDAT+L+  G++    YEK G +P
Sbjct:   14 NGIDFKIADLSLADFGRKELRIAEHEMPGLMSLRREYAEVQPLKGARISGSLHMTVQTAVLIETLTALGAEVRWASCNIFSTQDHAAAAVVVGPHGTPEEPKGVPVFAWKGESLEEYWWCAEQMLTWPDSDKPANMILDDGGDATMLVLRGMQ----YEKAGVVP 174          
BLAST of FC876347 vs. ExPASy Swiss-Prot
Match: SAHH_MYCMM (Adenosylhomocysteinase OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=ahcY PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.112e-44
Identity = 91/165 (55.15%), Postives = 112/165 (67.88%), Query Frame = 2
Query:  155 SGREFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDH---------XXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGP-DLIVDDGGDATLLIHEGVKAEEIYEKTGKLP 619
            +G +FK+ DLS ADFGR E+ +AE EMPGLM+ R E+   QP KGA+I+GSLHMT+QTAVLIETLTALGAEVRW SCNIFSTQDH                       WKGE+L+EYWWC E+ L W     P ++I+DDGGDAT+L+  G++    YEK G +P
Sbjct:   14 NGIDFKIADLSLADFGRKELRIAEHEMPGLMSLRREYAEVQPLKGARISGSLHMTVQTAVLIETLTALGAEVRWASCNIFSTQDHAAAAVVVGPHGTPEEPKGVPVFAWKGESLEEYWWCAEQMLTWPDSDKPANMILDDGGDATMLVLRGMQ----YEKAGVVP 174          
BLAST of FC876347 vs. ExPASy Swiss-Prot
Match: SAHH_DESVM (Adenosylhomocysteinase OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=ahcY PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.112e-44
Identity = 84/141 (59.57%), Postives = 104/141 (73.76%), Query Frame = 2
Query:  170 KVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDH-XXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHEGVKAE 589
            KV D++ ADFG  E++L+E E+PGLM     +G S+P KG ++TGSLHMTIQTA+LI+TL  LGA++RW SCNIFSTQDH               WKGETL++YWWCTE AL W  G GPDL+VDDGGDATL+IH+GV+ E
Sbjct:   17 KVADMALADFGHKEMQLSEREVPGLMELIRMYGVSKPLKGLRVTGSLHMTIQTAMLIKTLYELGADIRWASCNIFSTQDHAAAAIADSGMAKVFAWKGETLEDYWWCTEMALTWPDGSGPDLLVDDGGDATLMIHKGVEVE 157          
BLAST of FC876347 vs. ExPASy Swiss-Prot
Match: SAHH_METNO (Adenosylhomocysteinase OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=ahcY PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 2.758e-44
Identity = 86/145 (59.31%), Postives = 104/145 (71.72%), Query Frame = 2
Query:  155 SGREFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHEGVKAE 589
            S +++ V+D+  ADFGR EI +AE EMPGLMA R E+  SQP KGAKI GSLHMTIQTAVLIETL ALGA++RW SCNI+STQDH               KGETL EYW  T K  +W  GG P++I+DDGGDAT+ +H G++AE
Sbjct:    3 SAQDYIVRDIGLADFGRKEIAIAETEMPGLMAVRREYAASQPLKGAKIAGSLHMTIQTAVLIETLKALGADIRWVSCNIYSTQDHAAAAIAAAGIPVFAVKGETLTEYWDYTAKLFEWHDGGMPNMILDDGGDATMFVHAGLRAE 147          
BLAST of FC876347 vs. ExPASy Swiss-Prot
Match: SAHH_PELCD (Adenosylhomocysteinase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=ahcY PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 3.602e-44
Identity = 90/152 (59.21%), Postives = 109/152 (71.71%), Query Frame = 2
Query:  167 FKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHEGVKAEEIYEKTGKLPD 622
            + VKD+  A++GR EI +AE EMPGLMA R E+  ++P  GA+ITGSLHMTIQTAVLIETL  LGA++RW SCNI+STQDH              +KGETL+EYW  T KAL +    GP LIVDDGGDATLLIH GV+ E  Y +TGK+P+
Sbjct:   10 YVVKDMGLAEWGRREIRMAEAEMPGLMAIREEYRGTKPLAGARITGSLHMTIQTAVLIETLAELGADLRWASCNIYSTQDHAAAAIAATGVPVFAYKGETLEEYWEYTFKALAYEE--GPQLIVDDGGDATLLIHRGVERERAYARTGKVPE 159          
BLAST of FC876347 vs. ExPASy Swiss-Prot
Match: SAHH_SOLUE (Adenosylhomocysteinase OS=Solibacter usitatus (strain Ellin6076) GN=ahcY PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 4.704e-44
Identity = 89/154 (57.79%), Postives = 105/154 (68.18%), Query Frame = 2
Query:  128 MALSVEKSASGREFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHEGVKAE 589
            M  + EK  S   FKV DLS A++GR EI ++E EMPGLMA R ++   +P  G +ITGSLHMTIQTAVLIETL  LGA VRW SCNIFSTQDH              WKGE+L+EYWWCT +A+    G GP L+VDDGGD TLLIH+G + E
Sbjct:    1 MGTATEK-LSDATFKVADLSLAEWGRKEISVSEFEMPGLMAIRRKYAKEKPLAGVRITGSLHMTIQTAVLIETLVDLGASVRWASCNIFSTQDHAAAAIAKAGVPVFAWKGESLEEYWWCTLQAVTHPGGKGPQLVVDDGGDVTLLIHKGYELE 153          
BLAST of FC876347 vs. ExPASy Swiss-Prot
Match: SAHH_MYCLE (Adenosylhomocysteinase OS=Mycobacterium leprae GN=ahcY PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 4.704e-44
Identity = 93/165 (56.36%), Postives = 112/165 (67.88%), Query Frame = 2
Query:  155 SGREFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDH---------XXXXXXXXXXXXXXWKGETLQEYWWCTEKALDW-GPGGGPDLIVDDGGDATLLIHEGVKAEEIYEKTGKLP 619
            +G +FKV DLS A+FGR E++LAE EMPGLM+ R E+   QP KGA+I+GSLHMT+QTAVLIETLTALGAEVRW SCNIFSTQDH                       WKGETL+EYWW  E+ L W  P    ++I+DDGGDAT+L+  GV+    YEK G +P
Sbjct:   14 NGIDFKVADLSLANFGRKELDLAEYEMPGLMSLRHEYAEVQPLKGARISGSLHMTVQTAVLIETLTALGAEVRWASCNIFSTQDHAAAAVVVGPYGTPEEPKGVPVFAWKGETLEEYWWAAEQMLTWPDPDKPVNMILDDGGDATMLVLRGVQ----YEKAGVVP 174          
BLAST of FC876347 vs. ExPASy Swiss-Prot
Match: SAHH_MYCLB (Adenosylhomocysteinase OS=Mycobacterium leprae (strain Br4923) GN=ahcY PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 4.704e-44
Identity = 93/165 (56.36%), Postives = 112/165 (67.88%), Query Frame = 2
Query:  155 SGREFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDH---------XXXXXXXXXXXXXXWKGETLQEYWWCTEKALDW-GPGGGPDLIVDDGGDATLLIHEGVKAEEIYEKTGKLP 619
            +G +FKV DLS A+FGR E++LAE EMPGLM+ R E+   QP KGA+I+GSLHMT+QTAVLIETLTALGAEVRW SCNIFSTQDH                       WKGETL+EYWW  E+ L W  P    ++I+DDGGDAT+L+  GV+    YEK G +P
Sbjct:   14 NGIDFKVADLSLANFGRKELDLAEYEMPGLMSLRHEYAEVQPLKGARISGSLHMTVQTAVLIETLTALGAEVRWASCNIFSTQDHAAAAVVVGPYGTPEEPKGVPVFAWKGETLEEYWWAAEQMLTWPDPDKPVNMILDDGGDATMLVLRGVQ----YEKAGVVP 174          
BLAST of FC876347 vs. ExPASy Swiss-Prot
Match: SAHH_AGRRK (Adenosylhomocysteinase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=ahcY PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 4.704e-44
Identity = 87/142 (61.27%), Postives = 103/142 (72.54%), Query Frame = 2
Query:  164 EFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHEGVKAE 589
            ++ V D+  ADFGR EI +AE EMPGLMACRAEFG ++P KGA+ITGSLHMTIQTAVLIETL ALGAEVRW SCNIFSTQDH               KGE+L++YW  T+K   W  GG  ++I+DDGGDAT+ I  G +AE
Sbjct:    6 DYIVADIGLADFGRKEITIAETEMPGLMACRAEFGETKPLKGARITGSLHMTIQTAVLIETLVALGAEVRWASCNIFSTQDHAAAAIAASGVPVYAIKGESLEDYWIYTDKIFQWADGGFSNMILDDGGDATMYILLGARAE 147          
BLAST of FC876347 vs. ExPASy Swiss-Prot
Match: SAHH_RHIEC (Adenosylhomocysteinase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=ahcY PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 6.144e-44
Identity = 86/143 (60.14%), Postives = 104/143 (72.73%), Query Frame = 2
Query:  161 REFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHEGVKAE 589
            +++ V D+  ADFGR EI +AE EMPGLM+CRAEFG ++P KGA+ITGSLHMTIQTAVLIETL ALGAEVRW SCNIFSTQDH               KGE+L++YW  T+K   W  GG  ++I+DDGGDAT+ I  G +AE
Sbjct:    5 KDYVVADIGLADFGRKEITIAETEMPGLMSCRAEFGEAKPLKGARITGSLHMTIQTAVLIETLVALGAEVRWASCNIFSTQDHAAAAIAAAGVPVFAIKGESLEDYWVYTDKIFQWADGGLSNMILDDGGDATMYILLGARAE 147          
The following BLAST results are available for this feature:
BLAST of FC876347 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
SAHH_MYCUA2.112e-4455.15Adenosylhomocysteinase OS=Mycobacterium ulcerans (... [more]
SAHH_MYCMM2.112e-4455.15Adenosylhomocysteinase OS=Mycobacterium marinum (s... [more]
SAHH_DESVM2.112e-4459.57Adenosylhomocysteinase OS=Desulfovibrio vulgaris (... [more]
SAHH_METNO2.758e-4459.31Adenosylhomocysteinase OS=Methylobacterium nodulan... [more]
SAHH_PELCD3.602e-4459.21Adenosylhomocysteinase OS=Pelobacter carbinolicus ... [more]
SAHH_SOLUE4.704e-4457.79Adenosylhomocysteinase OS=Solibacter usitatus (str... [more]
SAHH_MYCLE4.704e-4456.36Adenosylhomocysteinase OS=Mycobacterium leprae GN=... [more]
SAHH_MYCLB4.704e-4456.36Adenosylhomocysteinase OS=Mycobacterium leprae (st... [more]
SAHH_AGRRK4.704e-4461.27Adenosylhomocysteinase OS=Agrobacterium radiobacte... [more]
SAHH_RHIEC6.144e-4460.14Adenosylhomocysteinase OS=Rhizobium etli (strain C... [more]

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Properties
Property NameValue
Genbank descriptionC32003G01EF DevOvary1 Citrus clementina cDNA clone C32003G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876347 ID=FC876347; Name=FC876347; organism=Citrus clementina; type=EST; length=628bp
GGCTCACCCCACTCTCTCTCTCTCTCGCTTGTACAATCATTCACTTTGTT
TGGTTAGTTTCCAAAGAGAGAGTAGATTGCCCTCTCTTCCTTCTTTCTTT
TAGATCTATCAATTCTATTAATCAACCATGGCTTTGTCCGTCGAGAAATC
CGCTAGCGGTCGTGAATTCAAGGTGAAGGATCTGTCCCAGGCTGACTTCG
GCCGCCTCGAAATCGAGTTGGCCGAAGTCGAAATGCCGGGGCTCATGGCT
TGCCGCGCCGAGTTCGGCCCTTCACAGCCTTTCAAAGGAGCCAAGATCAC
CGGTTCACTCCACATGACCATCCAGACGGCCGTCCTCATCGAGACACTCA
CCGCTCTCGGCGCCGAAGTCCGCTGGTGCTCCTGCAACATCTTCTCAACC
CAAGACCACGCGGCCGCCGCCATCGCACGTGACTCCGCCTCCGTCTTTGC
CTGGAAGGGTGAGACCCTCCAGGAGTACTGGTGGTGCACGGAGAAAGCCC
TGGACTGGGGTCCCGGCGGCGGCCCAGATCTCATCGTCGATGACGGTGGT
GACGCCACGTTGTTGATCCACGAGGGAGTCAAAGCTGAGGAGATCTACGA
GAAGACCGGGAAGTTGCCCGACCCGGNC
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