FC876351

Overview
NameFC876351
Unique NameFC876351
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length404
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10254 contig Ccv1_Contig10254:1..406. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876351 vs. ExPASy Swiss-Prot
Match: SAHH2_ARATH (Adenosylhomocysteinase 2 OS=Arabidopsis thaliana GN=SAHH2 PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 2.674e-40
Identity = 79/92 (85.87%), Postives = 87/92 (94.57%), Query Frame = 1
Query:  127 MALSVQKSASGREFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGVKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQ 402
            MAL V+K++SGRE+KVKD+SQADFGRLEIELAEVEMPGL++C  EFGPSQP KG +ITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQ
Sbjct:    1 MALLVEKTSSGREYKVKDMSQADFGRLEIELAEVEMPGLVSCVTEFGPSQPLKGARITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQ 92          
BLAST of FC876351 vs. ExPASy Swiss-Prot
Match: SAHH_SOLLC (Adenosylhomocysteinase OS=Solanum lycopersicum GN=SAHH PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 7.780e-40
Identity = 81/92 (88.04%), Postives = 85/92 (92.39%), Query Frame = 1
Query:  127 MALSVQKSASGREFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGVKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQ 402
            MAL V+K+ SGRE+KVKD+SQADFGRLEIELAEVEMPGLMA RAEFGPSQP KG KIT SLHMTIQTA LIETLTALGAEVRWCSCNIFSTQ
Sbjct:    1 MALLVEKTTSGREYKVKDMSQADFGRLEIELAEVEMPGLMASRAEFGPSQPVKGAKITCSLHMTIQTAFLIETLTALGAEVRWCSCNIFSTQ 92          
BLAST of FC876351 vs. ExPASy Swiss-Prot
Match: SAHH_SPHAL (Adenosylhomocysteinase OS=Sphingopyxis alaskensis GN=ahcY PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 5.588e-30
Identity = 63/85 (74.12%), Postives = 71/85 (83.53%), Query Frame = 1
Query:  148 SASGREFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGVKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQ 402
            +A  R++ V D+  ADFGR EI +AE EMPGLMA RAE+G SQP KG +ITGSLHMTIQTAVLIETLTALGAEVRW +CNIFSTQ
Sbjct:    5 AADTRDYVVADIGLADFGRKEINIAETEMPGLMALRAEYGASQPLKGARITGSLHMTIQTAVLIETLTALGAEVRWATCNIFSTQ 89          
BLAST of FC876351 vs. ExPASy Swiss-Prot
Match: SAHH_RHOCA (Adenosylhomocysteinase OS=Rhodobacter capsulatus GN=ahcY PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 9.532e-30
Identity = 60/80 (75.00%), Postives = 69/80 (86.25%), Query Frame = 1
Query:  163 EFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGVKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQ 402
            ++ VKD+  A+FGR E+++AE EMPGLMACR EFGPSQP KG +I GSLHMTIQTAVLIETL ALGA+VRW SCNIFSTQ
Sbjct:    3 DYIVKDIKLAEFGRKELDIAETEMPGLMACREEFGPSQPLKGARIAGSLHMTIQTAVLIETLKALGADVRWASCNIFSTQ 82          
BLAST of FC876351 vs. ExPASy Swiss-Prot
Match: SAHH_OCHA4 (Adenosylhomocysteinase OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=ahcY PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.626e-29
Identity = 62/83 (74.70%), Postives = 71/83 (85.54%), Query Frame = 1
Query:  154 SGREFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGVKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQ 402
            + ++F VKDLS AD+GR E+++AE EMPGLMA R EFG SQP KG +I+GSLHMTIQTAVLIETL ALGAEVRW SCNIFSTQ
Sbjct:    3 ASQDFVVKDLSLADWGRKELDIAETEMPGLMAAREEFGKSQPLKGARISGSLHMTIQTAVLIETLQALGAEVRWASCNIFSTQ 85          
BLAST of FC876351 vs. ExPASy Swiss-Prot
Match: SAHH_SINMW (Adenosylhomocysteinase OS=Sinorhizobium medicae (strain WSM419) GN=ahcY PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.124e-29
Identity = 61/84 (72.62%), Postives = 70/84 (83.33%), Query Frame = 1
Query:  151 ASGREFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGVKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQ 402
            ++ +++ V D+  ADFGR EI +AE EMPGLMACR EFG S+P KG +ITGSLHMTIQTAVLIETL ALGAEVRW SCNIFSTQ
Sbjct:    2 SANQDYIVADIGLADFGRKEIAIAETEMPGLMACREEFGASKPLKGARITGSLHMTIQTAVLIETLVALGAEVRWASCNIFSTQ 85          
BLAST of FC876351 vs. ExPASy Swiss-Prot
Match: SAHH_RHIEC (Adenosylhomocysteinase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=ahcY PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.773e-29
Identity = 60/81 (74.07%), Postives = 69/81 (85.19%), Query Frame = 1
Query:  160 REFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGVKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQ 402
            +++ V D+  ADFGR EI +AE EMPGLM+CRAEFG ++P KG +ITGSLHMTIQTAVLIETL ALGAEVRW SCNIFSTQ
Sbjct:    5 KDYVVADIGLADFGRKEITIAETEMPGLMSCRAEFGEAKPLKGARITGSLHMTIQTAVLIETLVALGAEVRWASCNIFSTQ 85          
BLAST of FC876351 vs. ExPASy Swiss-Prot
Match: SAHH_RHIE6 (Adenosylhomocysteinase OS=Rhizobium etli (strain CIAT 652) GN=ahcY PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.773e-29
Identity = 60/81 (74.07%), Postives = 69/81 (85.19%), Query Frame = 1
Query:  160 REFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGVKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQ 402
            +++ V D+  ADFGR EI +AE EMPGLM+CRAEFG ++P KG +ITGSLHMTIQTAVLIETL ALGAEVRW SCNIFSTQ
Sbjct:    5 KDYVVADIGLADFGRKEITIAETEMPGLMSCRAEFGDAKPLKGARITGSLHMTIQTAVLIETLVALGAEVRWASCNIFSTQ 85          
BLAST of FC876351 vs. ExPASy Swiss-Prot
Match: SAHH_AGRRK (Adenosylhomocysteinase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=ahcY PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.773e-29
Identity = 61/80 (76.25%), Postives = 68/80 (85.00%), Query Frame = 1
Query:  163 EFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGVKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQ 402
            ++ V D+  ADFGR EI +AE EMPGLMACRAEFG ++P KG +ITGSLHMTIQTAVLIETL ALGAEVRW SCNIFSTQ
Sbjct:    6 DYIVADIGLADFGRKEITIAETEMPGLMACRAEFGETKPLKGARITGSLHMTIQTAVLIETLVALGAEVRWASCNIFSTQ 85          
BLAST of FC876351 vs. ExPASy Swiss-Prot
Match: SAHH_RHIME (Adenosylhomocysteinase OS=Rhizobium meliloti GN=ahcY PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 3.622e-29
Identity = 61/81 (75.31%), Postives = 68/81 (83.95%), Query Frame = 1
Query:  160 REFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGVKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQ 402
            +++ V D+  ADFGR EI +AE EMPGLMACR EFG S+P KG +ITGSLHMTIQTAVLIETL ALGAEVRW SCNIFSTQ
Sbjct:    5 QDYIVADIGLADFGRKEIAIAETEMPGLMACREEFGASKPLKGARITGSLHMTIQTAVLIETLVALGAEVRWASCNIFSTQ 85          
The following BLAST results are available for this feature:
BLAST of FC876351 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 223
Match NameE-valueIdentityDescription
SAHH2_ARATH2.674e-4085.87Adenosylhomocysteinase 2 OS=Arabidopsis thaliana G... [more]
SAHH_SOLLC7.780e-4088.04Adenosylhomocysteinase OS=Solanum lycopersicum GN=... [more]
SAHH_SPHAL5.588e-3074.12Adenosylhomocysteinase OS=Sphingopyxis alaskensis ... [more]
SAHH_RHOCA9.532e-3075.00Adenosylhomocysteinase OS=Rhodobacter capsulatus G... [more]
SAHH_OCHA41.626e-2974.70Adenosylhomocysteinase OS=Ochrobactrum anthropi (s... [more]
SAHH_SINMW2.124e-2972.62Adenosylhomocysteinase OS=Sinorhizobium medicae (s... [more]
SAHH_RHIEC2.773e-2974.07Adenosylhomocysteinase OS=Rhizobium etli (strain C... [more]
SAHH_RHIE62.773e-2974.07Adenosylhomocysteinase OS=Rhizobium etli (strain C... [more]
SAHH_AGRRK2.773e-2976.25Adenosylhomocysteinase OS=Agrobacterium radiobacte... [more]
SAHH_RHIME3.622e-2975.31Adenosylhomocysteinase OS=Rhizobium meliloti GN=ah... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32003G05EF DevOvary1 Citrus clementina cDNA clone C32003G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876351 ID=FC876351; Name=FC876351; organism=Citrus clementina; type=EST; length=404bp
GGCTCACACCCACTCTATCTCTCTCGCTTGTACAATCATTCACTTTGTTT
GGTTGGTTTCCAAAGAGAGAGTAGAGTGCCCTCTCTTCCTTCTTCCTTTT
AGATCTATCAATTCTATTAATAAGCCATGGCTTTGTCCGTCCAGAAATCC
GCTAGCGGTCGTGAATTCAAGGTGAAGGATCTGTCCCAGGCTGACTTCGG
CCGCCTCGAAATCGAGTTGGCCGAAGTCGAAATGCCGGGGCTCATGGCTT
GCCGCGCCGAGTTCGGCCCTTCACAGCCCTTCAAAGGAGTCAAGATCACC
GGTTCACTCCACATGACCATCCAGACCGCCGTCCTCATCGAGACCCTCAC
CGCTCTCGGCGCCGAAGTCCGCTGGTGCTCCTGCAACATCTTCTCAACCC
AAGA
back to top