FC876351

Overview
NameFC876351
Unique NameFC876351
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length404
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10254 contig Ccv1_Contig10254:1..406. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876351 vs. ExPASy Swiss-Prot
Match: SAHH_MYXXD (Adenosylhomocysteinase OS=Myxococcus xanthus (strain DK 1622) GN=ahcY PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.748e-26
Identity = 55/81 (67.90%), Postives = 66/81 (81.48%), Query Frame = 1
Query:  160 REFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGVKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQ 402
            +++ + DLS AD+GR EI +AE EMP LMA R E+  +QP KG ++TGSLHMTIQTAVL+ETL ALGAEVRW SCNIFSTQ
Sbjct:   10 QDYAIADLSLADWGRKEIRIAESEMPALMAIREEYAKTQPLKGARVTGSLHMTIQTAVLVETLQALGAEVRWASCNIFSTQ 90          
BLAST of FC876351 vs. ExPASy Swiss-Prot
Match: SAHH_LEPCP (Adenosylhomocysteinase OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=ahcY PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.748e-26
Identity = 57/86 (66.28%), Postives = 66/86 (76.74%), Query Frame = 1
Query:  145 KSASGREFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGVKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQ 402
            K+    ++ V DLS A +GR EI +AE EMPGLMA R EF   QP KG ++TGSLHMTIQTAVL+ETL ALGA+VRW SCNIFSTQ
Sbjct:    6 KALHENDYLVADLSLAAWGRKEIRIAETEMPGLMAIREEFAAKQPLKGARVTGSLHMTIQTAVLVETLQALGAQVRWASCNIFSTQ 91          
BLAST of FC876351 vs. ExPASy Swiss-Prot
Match: SAHH_BART1 (Adenosylhomocysteinase OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=ahcY PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.748e-26
Identity = 54/83 (65.06%), Postives = 68/83 (81.93%), Query Frame = 1
Query:  154 SGREFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGVKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQ 402
            + ++F VKD+  A +GR E+++AE EMPGLMACR EF  SQP +G +I+GSLHMTIQTAVLIETL A+GA++RW S NIFSTQ
Sbjct:    2 TAQDFVVKDIGLAAYGRKELDIAETEMPGLMACRKEFSSSQPLRGARISGSLHMTIQTAVLIETLKAIGADIRWSSSNIFSTQ 84          
BLAST of FC876351 vs. ExPASy Swiss-Prot
Match: SAHH_SYNS3 (Adenosylhomocysteinase OS=Synechococcus sp. (strain CC9311) GN=ahcY PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.896e-26
Identity = 55/93 (59.14%), Postives = 69/93 (74.19%), Query Frame = 1
Query:  124 AMALSVQKSASGREFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGVKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQ 402
            A A +  +    +++ + D+  ADFGR E+ +AE EMPGLMA RA++G  +P KG +I GSLHMTIQTAVLIETL  LGA+VRW SCNIFSTQ
Sbjct:    3 ATAAATAELQVAKDYVIADIGLADFGRKELNIAETEMPGLMALRAKYGKDKPLKGARIAGSLHMTIQTAVLIETLVELGADVRWASCNIFSTQ 95          
BLAST of FC876351 vs. ExPASy Swiss-Prot
Match: SAHH_RALSO (Adenosylhomocysteinase OS=Ralstonia solanacearum GN=ahcY PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.896e-26
Identity = 57/80 (71.25%), Postives = 64/80 (80.00%), Query Frame = 1
Query:  163 EFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGVKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQ 402
            ++ V D+  AD+GR EI +AE EMPGLMA R EF  SQP KG +I GSLHMTIQTAVLIETL ALGA+VRW SCNIFSTQ
Sbjct:   10 DYLVADIKLADWGRKEIAIAETEMPGLMAIRDEFAASQPLKGARIAGSLHMTIQTAVLIETLKALGADVRWASCNIFSTQ 89          
BLAST of FC876351 vs. ExPASy Swiss-Prot
Match: SAHH_RALPJ (Adenosylhomocysteinase OS=Ralstonia pickettii (strain 12J) GN=ahcY PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.896e-26
Identity = 57/80 (71.25%), Postives = 64/80 (80.00%), Query Frame = 1
Query:  163 EFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGVKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQ 402
            ++ V D+  AD+GR EI +AE EMPGLMA R EF  SQP KG +I GSLHMTIQTAVLIETL ALGA+VRW SCNIFSTQ
Sbjct:   10 DYLVADIKLADWGRKEIAIAETEMPGLMAIRDEFAASQPLKGARIAGSLHMTIQTAVLIETLKALGADVRWASCNIFSTQ 89          
BLAST of FC876351 vs. ExPASy Swiss-Prot
Match: SAHH_YEAST (Adenosylhomocysteinase OS=Saccharomyces cerevisiae GN=SAH1 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.394e-26
Identity = 58/85 (68.24%), Postives = 65/85 (76.47%), Query Frame = 1
Query:  148 SASGREFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGVKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQ 402
            SA  + +K+ D+S A FGR EIELAE EMPGLMA R  +G  QP KG +I G LHMTIQTAVLIETL ALGAEV W SCNI+STQ
Sbjct:    2 SAPAQNYKIADISLAAFGRKEIELAEHEMPGLMAIRKAYGDVQPLKGARIAGCLHMTIQTAVLIETLVALGAEVTWSSCNIYSTQ 86          
BLAST of FC876351 vs. ExPASy Swiss-Prot
Match: SAHH_GRAFK (Adenosylhomocysteinase OS=Gramella forsetii (strain KT0803) GN=ahcY PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.394e-26
Identity = 56/79 (70.89%), Postives = 63/79 (79.75%), Query Frame = 1
Query:  166 FKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGVKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQ 402
            +KVKD+  A++GR EIELAE EMPGLMA R E+G S+P KG +I G LHMTIQTAVLIETL  LGA V W SCNIFSTQ
Sbjct:   11 YKVKDIELAEYGRREIELAEAEMPGLMALRKEYGASKPLKGARIAGCLHMTIQTAVLIETLVELGANVTWSSCNIFSTQ 89          
BLAST of FC876351 vs. ExPASy Swiss-Prot
Match: SAHH_FLAPJ (Adenosylhomocysteinase OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=ahcY PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.394e-26
Identity = 59/79 (74.68%), Postives = 63/79 (79.75%), Query Frame = 1
Query:  166 FKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGVKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQ 402
            FKVKD+S A +GR EIELAE EMPGLMA RAE+   QP  G +I G LHMTIQTAVLIETL ALGAEV W SCNIFSTQ
Sbjct:   11 FKVKDISLAAWGRKEIELAEAEMPGLMALRAEYKNEQPLAGARIAGCLHMTIQTAVLIETLIALGAEVTWSSCNIFSTQ 89          
BLAST of FC876351 vs. ExPASy Swiss-Prot
Match: SAHH_DIAST (Adenosylhomocysteinase OS=Diaphorobacter sp. (strain TPSY) GN=ahcY PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.394e-26
Identity = 56/77 (72.73%), Postives = 63/77 (81.82%), Query Frame = 1
Query:  172 VKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGVKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQ 402
            + D+S A++GR EI +AE EMPGLMA R EF   QP KG +ITGSLHMTIQTAVLIETL ALGA+VRW SCNIFSTQ
Sbjct:   13 IADISLAEWGRKEIRIAETEMPGLMAIREEFAAKQPLKGARITGSLHMTIQTAVLIETLKALGADVRWASCNIFSTQ 89          
The following BLAST results are available for this feature:
BLAST of FC876351 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 223
Match NameE-valueIdentityDescription
SAHH_MYXXD3.748e-2667.90Adenosylhomocysteinase OS=Myxococcus xanthus (stra... [more]
SAHH_LEPCP3.748e-2666.28Adenosylhomocysteinase OS=Leptothrix cholodnii (st... [more]
SAHH_BART13.748e-2665.06Adenosylhomocysteinase OS=Bartonella tribocorum (s... [more]
SAHH_SYNS34.896e-2659.14Adenosylhomocysteinase OS=Synechococcus sp. (strai... [more]
SAHH_RALSO4.896e-2671.25Adenosylhomocysteinase OS=Ralstonia solanacearum G... [more]
SAHH_RALPJ4.896e-2671.25Adenosylhomocysteinase OS=Ralstonia pickettii (str... [more]
SAHH_YEAST6.394e-2668.24Adenosylhomocysteinase OS=Saccharomyces cerevisiae... [more]
SAHH_GRAFK6.394e-2670.89Adenosylhomocysteinase OS=Gramella forsetii (strai... [more]
SAHH_FLAPJ6.394e-2674.68Adenosylhomocysteinase OS=Flavobacterium psychroph... [more]
SAHH_DIAST6.394e-2672.73Adenosylhomocysteinase OS=Diaphorobacter sp. (stra... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32003G05EF DevOvary1 Citrus clementina cDNA clone C32003G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876351 ID=FC876351; Name=FC876351; organism=Citrus clementina; type=EST; length=404bp
GGCTCACACCCACTCTATCTCTCTCGCTTGTACAATCATTCACTTTGTTT
GGTTGGTTTCCAAAGAGAGAGTAGAGTGCCCTCTCTTCCTTCTTCCTTTT
AGATCTATCAATTCTATTAATAAGCCATGGCTTTGTCCGTCCAGAAATCC
GCTAGCGGTCGTGAATTCAAGGTGAAGGATCTGTCCCAGGCTGACTTCGG
CCGCCTCGAAATCGAGTTGGCCGAAGTCGAAATGCCGGGGCTCATGGCTT
GCCGCGCCGAGTTCGGCCCTTCACAGCCCTTCAAAGGAGTCAAGATCACC
GGTTCACTCCACATGACCATCCAGACCGCCGTCCTCATCGAGACCCTCAC
CGCTCTCGGCGCCGAAGTCCGCTGGTGCTCCTGCAACATCTTCTCAACCC
AAGA
back to top