FC876352

Overview
NameFC876352
Unique NameFC876352
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length658
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6036 contig Ccv1_Contig6036:8..665. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876352 vs. ExPASy Swiss-Prot
Match: G3OX1_ARATH (Gibberellin 3-beta-dioxygenase 1 OS=Arabidopsis thaliana GN=GA4 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.374e-11
Identity = 49/160 (30.63%), Postives = 72/160 (45.00%), Query Frame = 2
Query:  185 PEKEQPASATYHGPAP--EIPTIDLDDPVQDRLVRSIAEASREWGIFQVTNHGIPSDLIGKLQAVGKEFFELPQEEKEVYSRPADAKDVQGYGTKLQKEVEGKKSWVDHLFHRVWPPSSINYRFWPNNPPSYRAVNEEYAKYMREVVDKLFTYLSLGLGV 658
            P+ +   SA    PA    IP IDLD P        I  A R WG FQ++NHG+P  L+  ++ +    F LP + K   +R      V GYG         K+ W +  F     P +   + WP +  +Y  + EEY ++M+++  KL       LGV
Sbjct:   38 PKDDLLFSAAPSPPATGENIPLIDLDHP---DATNQIGHACRTWGAFQISNHGVPLGLLQDIEFLTGSLFGLPVQRKLKSAR--SETGVSGYGVARIASFFNKQMWSEG-FTITGSPLNDFRKLWPQHHLNYCDIVEEYEEHMKKLASKLMWLALNSLGV 191          
BLAST of FC876352 vs. ExPASy Swiss-Prot
Match: ACCH3_SOLLC (1-aminocyclopropane-1-carboxylate oxidase homolog OS=Solanum lycopersicum GN=ACO3 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.713e-11
Identity = 51/175 (29.14%), Postives = 82/175 (46.86%), Query Frame = 2
Query:  164 IPAEFVRPEKEQPASATYHGPAPEIPTIDLD-DPVQDR-LVRSIAEASREWGIFQVTNHGIPSDLIGKLQAVGKEFFELPQE-EKEVYSRPADAKDVQGYGTKLQKEVEGKKSWVDHLFHRVWPPSSINYRFWPNNPPSYRAVNE-------EYAKYMREVVDKLFTYLSLGLGV 658
            +P  FV P K++      H   P I    +D DP++ + +V  + +AS +WG FQV NHGIP+ ++ +     ++FFE   E +K+ Y+R    K V      L K      SW D +F  + P           NPPS +           +++K ++++   L   LS GLG+
Sbjct:   37 VPQIFVLPPKDRAKKCETHFVFPVIDLQGIDEDPIKHKEIVDKVRDASEKWGFFQVVNHGIPTSVLDRTLQGTRQFFEQDNEVKKQYYTRDTAKKVVYTSNLDLYKSSVPAASWRDTIFCYMAP-----------NPPSLQEFPTPCGESLIDFSKDVKKLGFTLLELLSEGLGL 200          
BLAST of FC876352 vs. ExPASy Swiss-Prot
Match: ACCO_MUSAC (1-aminocyclopropane-1-carboxylate oxidase OS=Musa acuminata GN=MAO1B PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.744e-11
Identity = 46/147 (31.29%), Postives = 73/147 (49.66%), Query Frame = 2
Query:  236 IPTID---LDDPVQDRLVRSIAEASREWGIFQVTNHGIPSDLIGKLQAVGKEFFELPQEEKEVYSRPADAKDVQGYGTKLQKEVEGKK----SWVDHLFHRVWPPSSINYRFWPNNPPSYRAVNEEYAKYMREVVDKLFTYLSLGLG 655
            IP ID   LD   +   +  IA    EWG FQ+ NHGIP +L+ +++ V  E ++L +EE+   S+P    D       L KE +G++     W D     V+     N   WP+NPP +    +EY + +R++ +K+   +   LG
Sbjct:    3 IPVIDFSKLDGKERAETMARIANGCEEWGFFQLVNHGIPVELLERVKKVSSECYKL-REERFEGSKPVQLLDT------LVKEGDGQRLDNVDWED-----VFVLQDDNE--WPSNPPDFEETMKEYREEIRKLAEKMMEVMDENLG 135          
The following BLAST results are available for this feature:
BLAST of FC876352 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
G3OX1_ARATH4.374e-1130.63Gibberellin 3-beta-dioxygenase 1 OS=Arabidopsis th... [more]
ACCH3_SOLLC5.713e-1129.141-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
ACCO_MUSAC9.744e-1131.291-aminocyclopropane-1-carboxylate oxidase OS=Musa ... [more]

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Properties
Property NameValue
Genbank descriptionC32003G06EF DevOvary1 Citrus clementina cDNA clone C32003G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876352 ID=FC876352; Name=FC876352; organism=Citrus clementina; type=EST; length=658bp
GAAGTGCGTAGCGTTACTGCGTCACAGTCGCAGGAAAGGCGCAAGCCAAG
AAAGAGAGAGGGAGAGAAGGAAAAGAAAAGTGGTGGGGTTTTGCTGGAAA
ATAAAATTAATGGAGGTGGAGAGGGTCCAAGCCATTGCTTCCTTATCCCA
TTCAAATGGCACAATTCCAGCAGAGTTCGTAAGACCCGAAAAAGAACAGC
CAGCAAGCGCAACGTACCACGGCCCCGCTCCTGAAATCCCCACGATCGAT
CTCGACGACCCCGTTCAAGACAGACTCGTACGTTCCATCGCGGAAGCCAG
CCGGGAGTGGGGGATTTTCCAGGTTACAAACCACGGGATACCTAGTGACC
TCATCGGTAAACTGCAAGCCGTCGGCAAAGAATTTTTTGAGCTCCCTCAG
GAAGAGAAAGAAGTGTATTCTCGTCCGGCTGATGCAAAAGACGTGCAAGG
ATACGGCACAAAGTTACAGAAAGAAGTCGAAGGAAAGAAATCTTGGGTTG
ATCATCTCTTCCACAGGGTTTGGCCTCCGTCTTCTATCAACTACCGCTTT
TGGCCCAACAACCCTCCTTCTTACCGAGCGGTGAATGAGGAGTATGCAAA
GTACATGAGGGAGGTGGTGGATAAGTTGTTTACGTATCTTTCGTTGGGAC
TGGGTGTC
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