FC876353

Overview
NameFC876353
Unique NameFC876353
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length666
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10903 contig Ccv1_Contig10903:5..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_SYNP2 (Diaminopimelate epimerase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=dapF PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.884e-32
Identity = 64/84 (76.19%), Postives = 69/84 (82.14%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            L F KY GLGNDFIL+DNR  T P +TPEQA +LCDR+FGIGADGVIFA+ G    DYTMRIFNSDGSEPEMCGNG RC ARFI
Sbjct:    3 LEFTKYQGLGNDFILLDNRQQTTPLVTPEQAIQLCDRHFGIGADGVIFALPGQAGADYTMRIFNSDGSEPEMCGNGIRCLARFI 86          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_CYAP8 (Diaminopimelate epimerase OS=Cyanothece sp. (strain PCC 8801) GN=dapF PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.884e-32
Identity = 62/85 (72.94%), Postives = 72/85 (84.71%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFIA 666
            + F KY GLGNDFIL+DNR+S  P ++PEQA K+CDR+FGIGADGVIF + G  +TDYTMRIFNSDGSEP+MCGNG RC ARFIA
Sbjct:    3 IEFSKYQGLGNDFILIDNRSSHTPLVSPEQAIKMCDRHFGIGADGVIFVLPGTANTDYTMRIFNSDGSEPQMCGNGIRCLARFIA 87          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_CYAP4 (Diaminopimelate epimerase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=dapF PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.345e-31
Identity = 61/85 (71.76%), Postives = 68/85 (80.00%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFIA 666
            L F KY GLGNDFIL+DNRN   P +TPEQA  +CDR+FG+GADGVIF +    +TDYTMRIFNSDGSEPEMCGNG RC ARF A
Sbjct:    3 LQFTKYQGLGNDFILIDNRNEATPLLTPEQAVDICDRHFGVGADGVIFLLPATGETDYTMRIFNSDGSEPEMCGNGIRCLARFAA 87          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_ACAM1 (Diaminopimelate epimerase OS=Acaryochloris marina (strain MBIC 11017) GN=dapF PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.345e-31
Identity = 60/85 (70.59%), Postives = 71/85 (83.53%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFIA 666
            + F KY GLGNDFIL+DNR+  +P +TP+QA ++CDRNFGIG DGVIFA+    DTDYTMRI+NSDGSEPEMCGNG RC ARF+A
Sbjct:    3 VEFTKYQGLGNDFILIDNRHQAQPCLTPDQAVQMCDRNFGIGGDGVIFALPPEGDTDYTMRIYNSDGSEPEMCGNGIRCLARFLA 87          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_MICAN (Diaminopimelate epimerase OS=Microcystis aeruginosa (strain NIES-843) GN=dapF PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.294e-31
Identity = 63/83 (75.90%), Postives = 70/83 (84.34%), Query Frame = 1
Query:  418 FVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFIA 666
            F KY GLGNDFIL+DNR+S EP IT E A  +CDR+FGIGADGVIFA+ G  +TDYTMRIFNSDGSEPEMCGNG RC A+FIA
Sbjct:    5 FTKYQGLGNDFILIDNRHSPEPLITAEMAVAMCDRHFGIGADGVIFALPGQAETDYTMRIFNSDGSEPEMCGNGIRCLAQFIA 87          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_SYNJA (Diaminopimelate epimerase OS=Synechococcus sp. (strain JA-3-3Ab) GN=dapF PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.625e-27
Identity = 55/84 (65.48%), Postives = 66/84 (78.57%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            L F KY GLGNDFILVDNR+  +P +TPE+A  LC+R FG+GADGVIF + G    D++MR+FNSDGSE EMCGNG RC ARF+
Sbjct:    5 LSFHKYQGLGNDFILVDNRHQPQPCLTPEEAVALCNRRFGVGADGVIFLLPGQEGADFSMRLFNSDGSEAEMCGNGIRCLARFL 88          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_SYNJB (Diaminopimelate epimerase OS=Synechococcus sp. GN=dapF PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.701e-26
Identity = 54/84 (64.29%), Postives = 66/84 (78.57%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            L F KY GLGNDFILVDNR  ++P ++PE+A  LC+R FG+GADGVIF + G    D++MR+FNSDGSE EMCGNG RC ARF+
Sbjct:    5 LSFHKYQGLGNDFILVDNRWQSQPCLSPEEAVALCNRRFGVGADGVIFLLPGQEGADFSMRLFNSDGSEAEMCGNGIRCLARFL 88          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_THEEB (Diaminopimelate epimerase OS=Thermosynechococcus elongatus (strain BP-1) GN=dapF PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.465e-26
Identity = 51/84 (60.71%), Postives = 66/84 (78.57%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            L F KY GLGNDF+L+DNR+  E  +TPEQA+  CDR+FG+GADGVIF + G  ++DY MR++N+DGS  +MCGNG RC A+FI
Sbjct:    3 LSFQKYQGLGNDFLLIDNRHQEELLLTPEQAQFWCDRHFGVGADGVIFLLRGTGESDYRMRMYNADGSVAQMCGNGIRCLAKFI 86          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_MOOTA (Diaminopimelate epimerase OS=Moorella thermoacetica (strain ATCC 39073) GN=dapF PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.068e-20
Identity = 48/84 (57.14%), Postives = 57/84 (67.86%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            +HFVK HGLGNDF+LV+      P   P  A ++C R FGIGADG+I  +L        MRIFN DGSEPEMCGNG RCFAR++
Sbjct:    1 MHFVKMHGLGNDFVLVNAMTEKVPGDLPGLARRVCHRRFGIGADGLIL-VLPSEQARLRMRIFNPDGSEPEMCGNGIRCFARYV 83          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_PROMM (Diaminopimelate epimerase OS=Prochlorococcus marinus (strain MIT 9313) GN=dapF PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.108e-20
Identity = 50/89 (56.18%), Postives = 61/89 (68.54%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNS--TEPRITPEQA--EKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFIA 666
            L F KY GLGNDF+L+D R    T+  I P+ A   K+CDR+FGIGADG+I A+    D D  M+IFN+DGS  EMCGNG RC  RF+A
Sbjct:    5 LQFSKYQGLGNDFLLIDGREDQLTQQVINPDPAWVRKICDRHFGIGADGLILALPPRADGDLRMQIFNADGSLAEMCGNGIRCLTRFLA 93          
The following BLAST results are available for this feature:
BLAST of FC876353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 275
Match NameE-valueIdentityDescription
DAPF_SYNP27.884e-3276.19Diaminopimelate epimerase OS=Synechococcus sp. (st... [more]
DAPF_CYAP87.884e-3272.94Diaminopimelate epimerase OS=Cyanothece sp. (strai... [more]
DAPF_CYAP41.345e-3171.76Diaminopimelate epimerase OS=Cyanothece sp. (strai... [more]
DAPF_ACAM11.345e-3170.59Diaminopimelate epimerase OS=Acaryochloris marina ... [more]
DAPF_MICAN2.294e-3175.90Diaminopimelate epimerase OS=Microcystis aeruginos... [more]
DAPF_SYNJA2.625e-2765.48Diaminopimelate epimerase OS=Synechococcus sp. (st... [more]
DAPF_SYNJB1.701e-2664.29Diaminopimelate epimerase OS=Synechococcus sp. GN=... [more]
DAPF_THEEB6.465e-2660.71Diaminopimelate epimerase OS=Thermosynechococcus e... [more]
DAPF_MOOTA1.068e-2057.14Diaminopimelate epimerase OS=Moorella thermoacetic... [more]
DAPF_PROMM3.108e-2056.18Diaminopimelate epimerase OS=Prochlorococcus marin... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32003G07EF DevOvary1 Citrus clementina cDNA clone C32003G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876353 ID=FC876353; Name=FC876353; organism=Citrus clementina; type=EST; length=666bp
GGAATACGGTAACGTTTCTGCAGGAAATGCAGAGGATACCGTCTCTTCTC
TTGCACAAAACCTAGATTCTCTTTTCAACGTAACGGCACTGTATCACACA
AACTAAACCAACCACCGCATTTGACATTACCGCGACCAAGAGCAGAAACA
GAAAAGCCGTCAAAGCAAGCATCGAGCATGGCCATAACCACCACGCGCTC
ACTCTCCGTCACGCCCGTAACTCGCCGCTCTGCCACTCCAATCAATCCTC
TTCGATCCTCCTCTTTATCTTATTCGTTGACTCGACCATTCAGTTCCAAT
TTGACTCTCAAAGTCCCTAGCTTCCGCGTCTCGGCATCTTCTATGAGCAG
CATTCACGCTCCGGAGAGCGCTTCGCGAACCTCTTTTCTTGACCGCAGAG
AGAGCGGCTTCCTTCATTTCGTCAAGTACCATGGCCTCGGCAACGACTTC
ATTTTGGTTGATAACAGGAATTCTACGGAACCTAGGATAACTCCGGAGCA
AGCGGAGAAGCTGTGTGATCGGAATTTTGGCATTGGGGCCGATGGAGTGA
TCTTCGCCATGCTTGGAGTCAATGACACTGATTATACAATGAGAATTTTC
AATTCTGATGGTAGCGAGCCAGAGATGTGTGGCAATGGAGNTCGATGCTT
TGCCAGATTCATTGCT
back to top