FC876353

Overview
NameFC876353
Unique NameFC876353
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length666
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10903 contig Ccv1_Contig10903:5..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_DESHD (Diaminopimelate epimerase OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=dapF PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.542e-19
Identity = 47/86 (54.65%), Postives = 57/86 (66.28%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRIT--PEQAEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            +  VK HGLGNDF+ +D+       +   PE A KLC R FG+G DG+I  +L  +  D  MRI NSDGSEPEMCGNG RCFAR+I
Sbjct:    1 MEIVKMHGLGNDFVFIDHFQGAPAELPDYPELARKLCHRQFGVGGDGLIM-VLPSDKADARMRILNSDGSEPEMCGNGIRCFARYI 85          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_PELTS (Diaminopimelate epimerase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=dapF PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.436e-19
Identity = 46/85 (54.12%), Postives = 58/85 (68.24%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDN-RNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            +HF K HGLGNDFILVD  +    P   P  A K+CDR+FG+GADG++  +L     D +MRIFN DGSE EMCGN  RC A+++
Sbjct:    1 MHFTKAHGLGNDFILVDCFKEKVNPEDFPGLAVKMCDRHFGVGADGLVL-LLPSPSADVSMRIFNPDGSEAEMCGNAIRCVAKYL 84          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_TERTT (Diaminopimelate epimerase OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=dapF PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.306e-18
Identity = 47/85 (55.29%), Postives = 58/85 (68.24%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            L F K HGLGNDF+++D   S +  ITPE+A KL DR+FG+G D V+      N D D+  RIFN+DGSE E CGNG RCFA F+
Sbjct:    3 LRFTKMHGLGNDFVMID-AISQKVTITPERARKLADRHFGVGCDQVLVVESPDNPDADFRYRIFNNDGSEVENCGNGARCFAVFV 86          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_LEPIN (Diaminopimelate epimerase OS=Leptospira interrogans GN=dapF PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.227e-18
Identity = 43/84 (51.19%), Postives = 60/84 (71.43%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            L F K  G+GND++ +D+  + + R+TPEQ +K+ DRNFGIG+DGVIF +      D+ M ++NSDGS  EMCGNG RC A++I
Sbjct:    4 LKFTKMEGIGNDYVYIDSTRN-DIRLTPEQIQKISDRNFGIGSDGVIF-IRNSKQGDFMMDMYNSDGSSSEMCGNGIRCVAKYI 85          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_LEPIC (Diaminopimelate epimerase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=dapF PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.227e-18
Identity = 43/84 (51.19%), Postives = 60/84 (71.43%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            L F K  G+GND++ +D+  + + R+TPEQ +K+ DRNFGIG+DGVIF +      D+ M ++NSDGS  EMCGNG RC A++I
Sbjct:    4 LKFTKMEGIGNDYVYIDSTRN-DIRLTPEQIQKISDRNFGIGSDGVIF-IRNSKQGDFMMDMYNSDGSSSEMCGNGIRCVAKYI 85          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_ELUMP (Diaminopimelate epimerase OS=Elusimicrobium minutum (strain Pei191) GN=dapF PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.227e-18
Identity = 49/86 (56.98%), Postives = 60/86 (69.77%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQA--EKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            + FVKY GLGNDFIL+D     + +I    A  +KLCDR+FGIGADG+I A+      DY +RI NSDG+EPEMCGNG RC  RF+
Sbjct:    1 MEFVKYQGLGNDFILID---CVKIKIDGLNALGKKLCDRHFGIGADGLI-AVFPSASADYKIRIINSDGTEPEMCGNGIRCAMRFV 82          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_DESAH (Diaminopimelate epimerase OS=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) GN=dapF PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.909e-18
Identity = 43/86 (50.00%), Postives = 57/86 (66.28%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQ--AEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            L+F K  GLGNDF+++D+RN    +  P    A+KLC R FG+G DG+I  ++     D   +IFN DGSEPEMCGNG RCFA+ +
Sbjct:    3 LNFTKMEGLGNDFVMLDDRNGAIVQTVPYPVLAKKLCSRRFGVGGDGIII-IIDSETADVGFKIFNPDGSEPEMCGNGMRCFAKLV 87          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_CARHZ (Diaminopimelate epimerase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=dapF PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.799e-18
Identity = 45/86 (52.33%), Postives = 60/86 (69.77%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVD---NRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARF 660
            + F+K HGLGNDF++VD   N+N     ++ + A+K+CDR FGIGADG++  +L     D+ MRI NSDGSE EMCGN  RC AR+
Sbjct:    1 MEFLKMHGLGNDFVVVDEIKNQNLVNKNLS-DLAKKICDRRFGIGADGLVL-LLPSEKADFKMRIINSDGSEAEMCGNAIRCVARY 84          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_SHELP (Diaminopimelate epimerase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=dapF PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.961e-18
Identity = 45/85 (52.94%), Postives = 57/85 (67.06%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            +HF K HGLGNDF++VD         +PEQ ++L DRNFGIG D ++      + D D+  RIFN+DGSE E CGNG RCFARF+
Sbjct:    2 IHFTKMHGLGNDFMVVDGVTQNV-YFSPEQIKRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNADGSEVEQCGNGARCFARFV 85          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_SHEFN (Diaminopimelate epimerase OS=Shewanella frigidimarina (strain NCIMB 400) GN=dapF PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.463e-18
Identity = 45/85 (52.94%), Postives = 56/85 (65.88%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            +HF K HGLGNDF++VD         +PEQ  +L DRNFGIG D ++      + D D+  RIFN+DGSE E CGNG RCFARF+
Sbjct:    2 IHFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNADGSEVEQCGNGARCFARFV 85          
The following BLAST results are available for this feature:
BLAST of FC876353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 275
Match NameE-valueIdentityDescription
DAPF_DESHD1.542e-1954.65Diaminopimelate epimerase OS=Desulfitobacterium ha... [more]
DAPF_PELTS3.436e-1954.12Diaminopimelate epimerase OS=Pelotomaculum thermop... [more]
DAPF_TERTT1.306e-1855.29Diaminopimelate epimerase OS=Teredinibacter turner... [more]
DAPF_LEPIN2.227e-1851.19Diaminopimelate epimerase OS=Leptospira interrogan... [more]
DAPF_LEPIC2.227e-1851.19Diaminopimelate epimerase OS=Leptospira interrogan... [more]
DAPF_ELUMP2.227e-1856.98Diaminopimelate epimerase OS=Elusimicrobium minutu... [more]
DAPF_DESAH2.909e-1850.00Diaminopimelate epimerase OS=Desulfobacterium auto... [more]
DAPF_CARHZ3.799e-1852.33Diaminopimelate epimerase OS=Carboxydothermus hydr... [more]
DAPF_SHELP4.961e-1852.94Diaminopimelate epimerase OS=Shewanella loihica (s... [more]
DAPF_SHEFN8.463e-1852.94Diaminopimelate epimerase OS=Shewanella frigidimar... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32003G07EF DevOvary1 Citrus clementina cDNA clone C32003G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876353 ID=FC876353; Name=FC876353; organism=Citrus clementina; type=EST; length=666bp
GGAATACGGTAACGTTTCTGCAGGAAATGCAGAGGATACCGTCTCTTCTC
TTGCACAAAACCTAGATTCTCTTTTCAACGTAACGGCACTGTATCACACA
AACTAAACCAACCACCGCATTTGACATTACCGCGACCAAGAGCAGAAACA
GAAAAGCCGTCAAAGCAAGCATCGAGCATGGCCATAACCACCACGCGCTC
ACTCTCCGTCACGCCCGTAACTCGCCGCTCTGCCACTCCAATCAATCCTC
TTCGATCCTCCTCTTTATCTTATTCGTTGACTCGACCATTCAGTTCCAAT
TTGACTCTCAAAGTCCCTAGCTTCCGCGTCTCGGCATCTTCTATGAGCAG
CATTCACGCTCCGGAGAGCGCTTCGCGAACCTCTTTTCTTGACCGCAGAG
AGAGCGGCTTCCTTCATTTCGTCAAGTACCATGGCCTCGGCAACGACTTC
ATTTTGGTTGATAACAGGAATTCTACGGAACCTAGGATAACTCCGGAGCA
AGCGGAGAAGCTGTGTGATCGGAATTTTGGCATTGGGGCCGATGGAGTGA
TCTTCGCCATGCTTGGAGTCAATGACACTGATTATACAATGAGAATTTTC
AATTCTGATGGTAGCGAGCCAGAGATGTGTGGCAATGGAGNTCGATGCTT
TGCCAGATTCATTGCT
back to top