FC876353
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_DESHD (Diaminopimelate epimerase OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=dapF PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.542e-19 Identity = 47/86 (54.65%), Postives = 57/86 (66.28%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRIT--PEQAEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 + VK HGLGNDF+ +D+ + PE A KLC R FG+G DG+I +L + D MRI NSDGSEPEMCGNG RCFAR+I Sbjct: 1 MEIVKMHGLGNDFVFIDHFQGAPAELPDYPELARKLCHRQFGVGGDGLIM-VLPSDKADARMRILNSDGSEPEMCGNGIRCFARYI 85
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_PELTS (Diaminopimelate epimerase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=dapF PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 3.436e-19 Identity = 46/85 (54.12%), Postives = 58/85 (68.24%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDN-RNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 +HF K HGLGNDFILVD + P P A K+CDR+FG+GADG++ +L D +MRIFN DGSE EMCGN RC A+++ Sbjct: 1 MHFTKAHGLGNDFILVDCFKEKVNPEDFPGLAVKMCDRHFGVGADGLVL-LLPSPSADVSMRIFNPDGSEAEMCGNAIRCVAKYL 84
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_TERTT (Diaminopimelate epimerase OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=dapF PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.306e-18 Identity = 47/85 (55.29%), Postives = 58/85 (68.24%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 L F K HGLGNDF+++D S + ITPE+A KL DR+FG+G D V+ N D D+ RIFN+DGSE E CGNG RCFA F+ Sbjct: 3 LRFTKMHGLGNDFVMID-AISQKVTITPERARKLADRHFGVGCDQVLVVESPDNPDADFRYRIFNNDGSEVENCGNGARCFAVFV 86
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_LEPIN (Diaminopimelate epimerase OS=Leptospira interrogans GN=dapF PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.227e-18 Identity = 43/84 (51.19%), Postives = 60/84 (71.43%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 L F K G+GND++ +D+ + + R+TPEQ +K+ DRNFGIG+DGVIF + D+ M ++NSDGS EMCGNG RC A++I Sbjct: 4 LKFTKMEGIGNDYVYIDSTRN-DIRLTPEQIQKISDRNFGIGSDGVIF-IRNSKQGDFMMDMYNSDGSSSEMCGNGIRCVAKYI 85
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_LEPIC (Diaminopimelate epimerase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=dapF PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.227e-18 Identity = 43/84 (51.19%), Postives = 60/84 (71.43%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 L F K G+GND++ +D+ + + R+TPEQ +K+ DRNFGIG+DGVIF + D+ M ++NSDGS EMCGNG RC A++I Sbjct: 4 LKFTKMEGIGNDYVYIDSTRN-DIRLTPEQIQKISDRNFGIGSDGVIF-IRNSKQGDFMMDMYNSDGSSSEMCGNGIRCVAKYI 85
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_ELUMP (Diaminopimelate epimerase OS=Elusimicrobium minutum (strain Pei191) GN=dapF PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.227e-18 Identity = 49/86 (56.98%), Postives = 60/86 (69.77%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQA--EKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 + FVKY GLGNDFIL+D + +I A +KLCDR+FGIGADG+I A+ DY +RI NSDG+EPEMCGNG RC RF+ Sbjct: 1 MEFVKYQGLGNDFILID---CVKIKIDGLNALGKKLCDRHFGIGADGLI-AVFPSASADYKIRIINSDGTEPEMCGNGIRCAMRFV 82
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_DESAH (Diaminopimelate epimerase OS=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) GN=dapF PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 2.909e-18 Identity = 43/86 (50.00%), Postives = 57/86 (66.28%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQ--AEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 L+F K GLGNDF+++D+RN + P A+KLC R FG+G DG+I ++ D +IFN DGSEPEMCGNG RCFA+ + Sbjct: 3 LNFTKMEGLGNDFVMLDDRNGAIVQTVPYPVLAKKLCSRRFGVGGDGIII-IIDSETADVGFKIFNPDGSEPEMCGNGMRCFAKLV 87
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_CARHZ (Diaminopimelate epimerase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=dapF PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 3.799e-18 Identity = 45/86 (52.33%), Postives = 60/86 (69.77%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVD---NRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARF 660 + F+K HGLGNDF++VD N+N ++ + A+K+CDR FGIGADG++ +L D+ MRI NSDGSE EMCGN RC AR+ Sbjct: 1 MEFLKMHGLGNDFVVVDEIKNQNLVNKNLS-DLAKKICDRRFGIGADGLVL-LLPSEKADFKMRIINSDGSEAEMCGNAIRCVARY 84
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_SHELP (Diaminopimelate epimerase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=dapF PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 4.961e-18 Identity = 45/85 (52.94%), Postives = 57/85 (67.06%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 +HF K HGLGNDF++VD +PEQ ++L DRNFGIG D ++ + D D+ RIFN+DGSE E CGNG RCFARF+ Sbjct: 2 IHFTKMHGLGNDFMVVDGVTQNV-YFSPEQIKRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNADGSEVEQCGNGARCFARFV 85
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_SHEFN (Diaminopimelate epimerase OS=Shewanella frigidimarina (strain NCIMB 400) GN=dapF PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 8.463e-18 Identity = 45/85 (52.94%), Postives = 56/85 (65.88%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 +HF K HGLGNDF++VD +PEQ +L DRNFGIG D ++ + D D+ RIFN+DGSE E CGNG RCFARF+ Sbjct: 2 IHFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNADGSEVEQCGNGARCFARFV 85 The following BLAST results are available for this feature:
BLAST of FC876353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 275
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876353 ID=FC876353; Name=FC876353; organism=Citrus clementina; type=EST; length=666bpback to top |