FC876353
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_ACTPJ (Diaminopimelate epimerase OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=dapF PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 4.806e-13 Identity = 38/85 (44.71%), Postives = 52/85 (61.18%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 + F K HGLGNDF+++D +T E KL DR+ G+G D ++ + + D+ RIFN+DGSE CGNG RCFARF+ Sbjct: 1 MQFSKMHGLGNDFMVIDGVTQNV-YLTEEVIRKLADRHRGVGFDQLLLVEPPYDPELDFHYRIFNADGSEVAQCGNGARCFARFV 84
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_ACTP2 (Diaminopimelate epimerase OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=dapF PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 4.806e-13 Identity = 38/85 (44.71%), Postives = 52/85 (61.18%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 + F K HGLGNDF+++D +T E KL DR+ G+G D ++ + + D+ RIFN+DGSE CGNG RCFARF+ Sbjct: 1 MQFSKMHGLGNDFMVIDGVTQNV-YLTEEVIRKLADRHRGVGFDQLLLVEPPYDPELDFHYRIFNADGSEVAQCGNGARCFARFV 84
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_SHIB3 (Diaminopimelate epimerase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=dapF PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 6.276e-13 Identity = 38/85 (44.71%), Postives = 53/85 (62.35%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 + F K HGLGNDF++VD + +PE +L DR+ G+G D ++ + + D+ RIFN+DGSE CGNG RCFARF+ Sbjct: 1 MQFSKMHGLGNDFMVVD-AVTQNVFFSPELIRRLADRHLGVGFDQLLVIEPPYDPELDFHYRIFNADGSEVAQCGNGARCFARFV 84
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_NEIMB (Diaminopimelate epimerase OS=Neisseria meningitidis serogroup B GN=dapF PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 6.276e-13 Identity = 42/90 (46.67%), Postives = 57/90 (63.33%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAE--KLCDRNFGIGADGVIFAMLGVNDT---DYTMRIFNSDGSEPEMCGNGXRCFARFIA 666 L F K HGLGNDF+++D + TPE A + DR G+G D ++ ++G ++T D+ RIFN+DGSE CGNG RCFARF+A Sbjct: 4 LKFTKMHGLGNDFMVID---AVSQDFTPEDAPIAEWADRFRGVGFDQLL--VVGRSETEGVDFRYRIFNADGSEVGQCGNGARCFARFVA 88
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_HERAR (Diaminopimelate epimerase OS=Herminiimonas arsenicoxydans GN=dapF PE=3 SV=2) HSP 1 Score: 74.3294 bits (181), Expect = 6.276e-13 Identity = 36/85 (42.35%), Postives = 50/85 (58.82%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLG-VNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 + F K HG GNDF+++D N + TP Q + L DR FG+GAD ++ D+ RI+N+DG E E CGNG R F +F+ Sbjct: 3 IKFTKMHGAGNDFVVIDAINQSI-HFTPAQWQHLADRRFGVGADQMLVVEKPQAAGVDFRYRIYNADGGEVEQCGNGARAFVKFV 86
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_VESOH (Diaminopimelate epimerase OS=Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA) GN=dapF PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 8.197e-13 Identity = 37/85 (43.53%), Postives = 53/85 (62.35%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLG-VNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 ++F K HGLGNDF++VDN + + ++ L +R FGIG D ++ + D+ I+NS+GSE E CGNG RCFARF+ Sbjct: 3 INFTKMHGLGNDFMVVDNL-AGDITFNAKKITNLANRAFGIGFDQLLVVETSNIRGVDFRYVIYNSNGSEVEQCGNGARCFARFV 86
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_EUBR3 (Diaminopimelate epimerase OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=dapF PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 8.197e-13 Identity = 39/87 (44.83%), Postives = 56/87 (64.37%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKL--CDRNFGIGADGVIFAMLGVND-TDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 + F K HG GND++ V N E ++ + DR+FGIG+DG+I +G +D D+ MRI+N+DGSE EMCGNG RC A+++ Sbjct: 1 MKFTKMHGCGNDYVYV---NLFEEKLDDPARVSIYVSDRHFGIGSDGLI--TIGPSDKADFRMRIYNADGSEAEMCGNGIRCVAKYV 82
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_ZYMMO (Diaminopimelate epimerase OS=Zymomonas mobilis GN=dapF PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.071e-12 Identity = 38/82 (46.34%), Postives = 51/82 (62.20%), Query Frame = 1 Query: 418 FVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 F K HGLGNDFI++D R + ++ P A+ L +R+ GIG D +I G N D +M I+N+DGSE E CGN RC F+ Sbjct: 5 FHKMHGLGNDFIVLDARKNPI-QMNPALAQALSNRHTGIGCDQLIIIGNGKNQADVSMEIWNADGSEVEACGNATRCVPVFL 85
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_RUTMC (Diaminopimelate epimerase OS=Ruthia magnifica subsp. Calyptogena magnifica GN=dapF PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.071e-12 Identity = 37/86 (43.02%), Postives = 53/86 (61.63%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLG-VNDTDYTMRIFNSDGSEPEMCGNGXRCFARFIA 666 ++FVK HGLGNDF++VDN + + EQ L +R+ GIG D ++ + D+ I+N+DG E E CGNG RCFA F++ Sbjct: 3 INFVKMHGLGNDFMMVDNL-AGDITFNAEQIANLANRHLGIGFDQLLLVETSNTKNVDFRYVIYNADGLEVEQCGNGARCFAFFVS 87
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_NEIMA (Diaminopimelate epimerase OS=Neisseria meningitidis serogroup A GN=dapF PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.071e-12 Identity = 42/90 (46.67%), Postives = 56/90 (62.22%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAE--KLCDRNFGIGADGVIFAMLGVNDT---DYTMRIFNSDGSEPEMCGNGXRCFARFIA 666 L F K HGLGNDF+++D + TPE A DR G+G D ++ ++G ++T D+ RIFN+DGSE CGNG RCFARF+A Sbjct: 4 LKFTKMHGLGNDFMVID---AVSQDFTPEDAPIAAWADRFRGVGFDQLL--VVGRSETEGVDFRYRIFNADGSEVGQCGNGARCFARFVA 88 The following BLAST results are available for this feature:
BLAST of FC876353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 275
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876353 ID=FC876353; Name=FC876353; organism=Citrus clementina; type=EST; length=666bpback to top |