FC876353

Overview
NameFC876353
Unique NameFC876353
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length666
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_ACTPJ (Diaminopimelate epimerase OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=dapF PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.806e-13
Identity = 38/85 (44.71%), Postives = 52/85 (61.18%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            + F K HGLGNDF+++D        +T E   KL DR+ G+G D ++      + + D+  RIFN+DGSE   CGNG RCFARF+
Sbjct:    1 MQFSKMHGLGNDFMVIDGVTQNV-YLTEEVIRKLADRHRGVGFDQLLLVEPPYDPELDFHYRIFNADGSEVAQCGNGARCFARFV 84          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_ACTP2 (Diaminopimelate epimerase OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=dapF PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.806e-13
Identity = 38/85 (44.71%), Postives = 52/85 (61.18%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            + F K HGLGNDF+++D        +T E   KL DR+ G+G D ++      + + D+  RIFN+DGSE   CGNG RCFARF+
Sbjct:    1 MQFSKMHGLGNDFMVIDGVTQNV-YLTEEVIRKLADRHRGVGFDQLLLVEPPYDPELDFHYRIFNADGSEVAQCGNGARCFARFV 84          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_SHIB3 (Diaminopimelate epimerase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=dapF PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.276e-13
Identity = 38/85 (44.71%), Postives = 53/85 (62.35%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            + F K HGLGNDF++VD   +     +PE   +L DR+ G+G D ++      + + D+  RIFN+DGSE   CGNG RCFARF+
Sbjct:    1 MQFSKMHGLGNDFMVVD-AVTQNVFFSPELIRRLADRHLGVGFDQLLVIEPPYDPELDFHYRIFNADGSEVAQCGNGARCFARFV 84          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_NEIMB (Diaminopimelate epimerase OS=Neisseria meningitidis serogroup B GN=dapF PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.276e-13
Identity = 42/90 (46.67%), Postives = 57/90 (63.33%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAE--KLCDRNFGIGADGVIFAMLGVNDT---DYTMRIFNSDGSEPEMCGNGXRCFARFIA 666
            L F K HGLGNDF+++D   +     TPE A   +  DR  G+G D ++  ++G ++T   D+  RIFN+DGSE   CGNG RCFARF+A
Sbjct:    4 LKFTKMHGLGNDFMVID---AVSQDFTPEDAPIAEWADRFRGVGFDQLL--VVGRSETEGVDFRYRIFNADGSEVGQCGNGARCFARFVA 88          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_HERAR (Diaminopimelate epimerase OS=Herminiimonas arsenicoxydans GN=dapF PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 6.276e-13
Identity = 36/85 (42.35%), Postives = 50/85 (58.82%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLG-VNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            + F K HG GNDF+++D  N +    TP Q + L DR FG+GAD ++          D+  RI+N+DG E E CGNG R F +F+
Sbjct:    3 IKFTKMHGAGNDFVVIDAINQSI-HFTPAQWQHLADRRFGVGADQMLVVEKPQAAGVDFRYRIYNADGGEVEQCGNGARAFVKFV 86          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_VESOH (Diaminopimelate epimerase OS=Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA) GN=dapF PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.197e-13
Identity = 37/85 (43.53%), Postives = 53/85 (62.35%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLG-VNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            ++F K HGLGNDF++VDN  + +     ++   L +R FGIG D ++      +   D+   I+NS+GSE E CGNG RCFARF+
Sbjct:    3 INFTKMHGLGNDFMVVDNL-AGDITFNAKKITNLANRAFGIGFDQLLVVETSNIRGVDFRYVIYNSNGSEVEQCGNGARCFARFV 86          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_EUBR3 (Diaminopimelate epimerase OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=dapF PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.197e-13
Identity = 39/87 (44.83%), Postives = 56/87 (64.37%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKL--CDRNFGIGADGVIFAMLGVND-TDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            + F K HG GND++ V   N  E ++       +   DR+FGIG+DG+I   +G +D  D+ MRI+N+DGSE EMCGNG RC A+++
Sbjct:    1 MKFTKMHGCGNDYVYV---NLFEEKLDDPARVSIYVSDRHFGIGSDGLI--TIGPSDKADFRMRIYNADGSEAEMCGNGIRCVAKYV 82          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_ZYMMO (Diaminopimelate epimerase OS=Zymomonas mobilis GN=dapF PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.071e-12
Identity = 38/82 (46.34%), Postives = 51/82 (62.20%), Query Frame = 1
Query:  418 FVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            F K HGLGNDFI++D R +   ++ P  A+ L +R+ GIG D +I    G N  D +M I+N+DGSE E CGN  RC   F+
Sbjct:    5 FHKMHGLGNDFIVLDARKNPI-QMNPALAQALSNRHTGIGCDQLIIIGNGKNQADVSMEIWNADGSEVEACGNATRCVPVFL 85          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_RUTMC (Diaminopimelate epimerase OS=Ruthia magnifica subsp. Calyptogena magnifica GN=dapF PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.071e-12
Identity = 37/86 (43.02%), Postives = 53/86 (61.63%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLG-VNDTDYTMRIFNSDGSEPEMCGNGXRCFARFIA 666
            ++FVK HGLGNDF++VDN  + +     EQ   L +R+ GIG D ++        + D+   I+N+DG E E CGNG RCFA F++
Sbjct:    3 INFVKMHGLGNDFMMVDNL-AGDITFNAEQIANLANRHLGIGFDQLLLVETSNTKNVDFRYVIYNADGLEVEQCGNGARCFAFFVS 87          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_NEIMA (Diaminopimelate epimerase OS=Neisseria meningitidis serogroup A GN=dapF PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.071e-12
Identity = 42/90 (46.67%), Postives = 56/90 (62.22%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAE--KLCDRNFGIGADGVIFAMLGVNDT---DYTMRIFNSDGSEPEMCGNGXRCFARFIA 666
            L F K HGLGNDF+++D   +     TPE A      DR  G+G D ++  ++G ++T   D+  RIFN+DGSE   CGNG RCFARF+A
Sbjct:    4 LKFTKMHGLGNDFMVID---AVSQDFTPEDAPIAAWADRFRGVGFDQLL--VVGRSETEGVDFRYRIFNADGSEVGQCGNGARCFARFVA 88          
The following BLAST results are available for this feature:
BLAST of FC876353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 275
Match NameE-valueIdentityDescription
DAPF_ACTPJ4.806e-1344.71Diaminopimelate epimerase OS=Actinobacillus pleuro... [more]
DAPF_ACTP24.806e-1344.71Diaminopimelate epimerase OS=Actinobacillus pleuro... [more]
DAPF_SHIB36.276e-1344.71Diaminopimelate epimerase OS=Shigella boydii serot... [more]
DAPF_NEIMB6.276e-1346.67Diaminopimelate epimerase OS=Neisseria meningitidi... [more]
DAPF_HERAR6.276e-1342.35Diaminopimelate epimerase OS=Herminiimonas arsenic... [more]
DAPF_VESOH8.197e-1343.53Diaminopimelate epimerase OS=Vesicomyosocius okuta... [more]
DAPF_EUBR38.197e-1344.83Diaminopimelate epimerase OS=Eubacterium rectale (... [more]
DAPF_ZYMMO1.071e-1246.34Diaminopimelate epimerase OS=Zymomonas mobilis GN=... [more]
DAPF_RUTMC1.071e-1243.02Diaminopimelate epimerase OS=Ruthia magnifica subs... [more]
DAPF_NEIMA1.071e-1246.67Diaminopimelate epimerase OS=Neisseria meningitidi... [more]

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Properties
Property NameValue
Genbank descriptionC32003G07EF DevOvary1 Citrus clementina cDNA clone C32003G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876353 ID=FC876353; Name=FC876353; organism=Citrus clementina; type=EST; length=666bp
GGAATACGGTAACGTTTCTGCAGGAAATGCAGAGGATACCGTCTCTTCTC
TTGCACAAAACCTAGATTCTCTTTTCAACGTAACGGCACTGTATCACACA
AACTAAACCAACCACCGCATTTGACATTACCGCGACCAAGAGCAGAAACA
GAAAAGCCGTCAAAGCAAGCATCGAGCATGGCCATAACCACCACGCGCTC
ACTCTCCGTCACGCCCGTAACTCGCCGCTCTGCCACTCCAATCAATCCTC
TTCGATCCTCCTCTTTATCTTATTCGTTGACTCGACCATTCAGTTCCAAT
TTGACTCTCAAAGTCCCTAGCTTCCGCGTCTCGGCATCTTCTATGAGCAG
CATTCACGCTCCGGAGAGCGCTTCGCGAACCTCTTTTCTTGACCGCAGAG
AGAGCGGCTTCCTTCATTTCGTCAAGTACCATGGCCTCGGCAACGACTTC
ATTTTGGTTGATAACAGGAATTCTACGGAACCTAGGATAACTCCGGAGCA
AGCGGAGAAGCTGTGTGATCGGAATTTTGGCATTGGGGCCGATGGAGTGA
TCTTCGCCATGCTTGGAGTCAATGACACTGATTATACAATGAGAATTTTC
AATTCTGATGGTAGCGAGCCAGAGATGTGTGGCAATGGAGNTCGATGCTT
TGCCAGATTCATTGCT
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