FC876353

Overview
NameFC876353
Unique NameFC876353
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length666
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10903 contig Ccv1_Contig10903:5..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_CORA7 (Diaminopimelate epimerase OS=Corynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CN-1) GN=dapF PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.874e-11
Identity = 40/99 (40.40%), Postives = 53/99 (53.54%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAML---------------GVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            + F K HG  NDF++V+    T P + PE+   LCDR  GIGADGV+  +                G+N  D+ M   N+DGS  EMCGNG R FA ++
Sbjct:    1 MKFAKGHGTENDFVIVEG---TGP-LPPEKVVALCDRRAGIGADGVLRIIRAGELLASGEIDELAPGINADDWFMDYRNADGSVAEMCGNGTRVFAHWV 95          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_BAUCH (Diaminopimelate epimerase OS=Baumannia cicadellinicola subsp. Homalodisca coagulata GN=dapF PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.874e-11
Identity = 35/85 (41.18%), Postives = 51/85 (60.00%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            + F K HGLGNDF++VD        ++P +   L +R+ G+G D ++F     + + D+  RIFN+DGSE   CGNG RC A F+
Sbjct:    1 MQFSKMHGLGNDFMVVDVVTQNV-YLSPTKIRFLANRHSGVGFDQLLFVEPPYDPEIDFHYRIFNADGSEVTQCGNGARCLAHFV 84          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_BACHD (Diaminopimelate epimerase OS=Bacillus halodurans GN=dapF PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.874e-11
Identity = 36/84 (42.86%), Postives = 50/84 (59.52%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDN-RNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARF 660
            + F K HGLGN +I VD  +   +    P  A  + D+N GIG+DG+I  +   +     MR+FN+DGSE + CGNG RC A+F
Sbjct:    1 MKFTKMHGLGNSYIYVDCFKELLKEEELPALAVAVADKNKGIGSDGMIL-ICPSDRAPVKMRVFNNDGSEAKNCGNGLRCVAKF 83          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_GEOKA (Diaminopimelate epimerase OS=Geobacillus kaustophilus GN=dapF PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.672e-11
Identity = 38/82 (46.34%), Postives = 47/82 (57.32%), Query Frame = 1
Query:  418 FVKYHGLGNDFILVDNRNSTEPRIT-PEQAEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARF 660
            F K HGLGN +I VD    T P    P  A  + D + GIG+DG+I  +         MRIFNSDGSE + CGNG RC A++
Sbjct:    6 FTKMHGLGNSYIYVDLFRETLPEEELPAIARSVADVHTGIGSDGLIL-ICPSEKAPVKMRIFNSDGSEGKNCGNGLRCVAKY 86          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_AQUAE (Diaminopimelate epimerase OS=Aquifex aeolicus GN=dapF PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.672e-11
Identity = 36/91 (39.56%), Postives = 49/91 (53.85%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQA-------EKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARF 660
            + F K  G GNDF+++D+R+        E+         K+C  + G+GADG+I      N + D+    FNSDGS  EMCGNG RC  RF
Sbjct:    1 MEFWKLQGSGNDFVVIDDRDEKLESFLKERGVSKEDFVRKVCAFHTGVGADGLILIKNPDNPENDFKWEFFNSDGSVAEMCGNGSRCAVRF 91          
The following BLAST results are available for this feature:
BLAST of FC876353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 275
Match NameE-valueIdentityDescription
DAPF_CORA75.874e-1140.40Diaminopimelate epimerase OS=Corynebacterium aurim... [more]
DAPF_BAUCH5.874e-1141.18Diaminopimelate epimerase OS=Baumannia cicadellini... [more]
DAPF_BACHD5.874e-1142.86Diaminopimelate epimerase OS=Bacillus halodurans G... [more]
DAPF_GEOKA7.672e-1146.34Diaminopimelate epimerase OS=Geobacillus kaustophi... [more]
DAPF_AQUAE7.672e-1139.56Diaminopimelate epimerase OS=Aquifex aeolicus GN=d... [more]

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Properties
Property NameValue
Genbank descriptionC32003G07EF DevOvary1 Citrus clementina cDNA clone C32003G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876353 ID=FC876353; Name=FC876353; organism=Citrus clementina; type=EST; length=666bp
GGAATACGGTAACGTTTCTGCAGGAAATGCAGAGGATACCGTCTCTTCTC
TTGCACAAAACCTAGATTCTCTTTTCAACGTAACGGCACTGTATCACACA
AACTAAACCAACCACCGCATTTGACATTACCGCGACCAAGAGCAGAAACA
GAAAAGCCGTCAAAGCAAGCATCGAGCATGGCCATAACCACCACGCGCTC
ACTCTCCGTCACGCCCGTAACTCGCCGCTCTGCCACTCCAATCAATCCTC
TTCGATCCTCCTCTTTATCTTATTCGTTGACTCGACCATTCAGTTCCAAT
TTGACTCTCAAAGTCCCTAGCTTCCGCGTCTCGGCATCTTCTATGAGCAG
CATTCACGCTCCGGAGAGCGCTTCGCGAACCTCTTTTCTTGACCGCAGAG
AGAGCGGCTTCCTTCATTTCGTCAAGTACCATGGCCTCGGCAACGACTTC
ATTTTGGTTGATAACAGGAATTCTACGGAACCTAGGATAACTCCGGAGCA
AGCGGAGAAGCTGTGTGATCGGAATTTTGGCATTGGGGCCGATGGAGTGA
TCTTCGCCATGCTTGGAGTCAATGACACTGATTATACAATGAGAATTTTC
AATTCTGATGGTAGCGAGCCAGAGATGTGTGGCAATGGAGNTCGATGCTT
TGCCAGATTCATTGCT
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