FC876353

Overview
NameFC876353
Unique NameFC876353
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length666
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_SHEAM (Diaminopimelate epimerase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=dapF PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.463e-18
Identity = 45/85 (52.94%), Postives = 56/85 (65.88%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            +HF K HGLGNDF++VD         +PEQ  +L DRNFGIG D ++      + D D+  RIFN+DGSE E CGNG RCFARF+
Sbjct:    2 IHFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNADGSEVEQCGNGARCFARFV 85          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_PROMT (Diaminopimelate epimerase OS=Prochlorococcus marinus (strain NATL2A) GN=dapF PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.463e-18
Identity = 44/87 (50.57%), Postives = 56/87 (64.37%), Query Frame = 1
Query:  415 HFVKYHGLGNDFILVDNRNSTEPRITPEQA----EKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            +F KY GLGNDFI+ D R++    +  +      E LC+RNFGIGADG+I  +   N     M+I+NSDGSEPEMCGNG RC   F+
Sbjct:    4 NFSKYQGLGNDFIIFDARSNNLDHLFSKNKDNFIEHLCNRNFGIGADGIILILESNNKCFVRMKIYNSDGSEPEMCGNGIRCLIAFL 90          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_PROM1 (Diaminopimelate epimerase OS=Prochlorococcus marinus (strain NATL1A) GN=dapF PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.463e-18
Identity = 44/87 (50.57%), Postives = 56/87 (64.37%), Query Frame = 1
Query:  415 HFVKYHGLGNDFILVDNRNSTEPRITPEQA----EKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            +F KY GLGNDFI+ D R++    +  +      E LC+RNFGIGADG+I  +   N     M+I+NSDGSEPEMCGNG RC   F+
Sbjct:    4 NFSKYQGLGNDFIIFDARSNNLDHLFSKNKDNFIEHLCNRNFGIGADGIILILESNNKCFVRMKIYNSDGSEPEMCGNGIRCLIAFL 90          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_NATTJ (Diaminopimelate epimerase OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=dapF PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.463e-18
Identity = 46/88 (52.27%), Postives = 59/88 (67.05%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN---DTDYTMRIFNSDGSEPEMCGNGXRCFARFIA 666
            + F K HGLGNDFIL+ +      R  P+ A++LCDR FGIGADG++      N   + DY MRI+NSDGSE EMCGN  RC A+++A
Sbjct:    1 MKFEKMHGLGNDFILMKDFQ----RNYPDLAKRLCDRRFGIGADGLVIYSSCKNSNINADYQMRIYNSDGSEAEMCGNAIRCLAKYLA 84          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_LEPBA (Diaminopimelate epimerase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=dapF PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.463e-18
Identity = 41/84 (48.81%), Postives = 58/84 (69.05%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            ++F K  G+GND++ +D     + R++PEQ +KL DRNFGIG DGVIF +   N  ++ M ++NSDGS  EMCGNG RC  +F+
Sbjct:    3 INFTKMEGIGNDYVYID-ATKNDIRLSPEQIQKLSDRNFGIGGDGVIF-IRNSNSGEFQMDMYNSDGSSSEMCGNGVRCVGKFV 84          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_NITMU (Diaminopimelate epimerase OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=dapF PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.105e-17
Identity = 40/84 (47.62%), Postives = 54/84 (64.29%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            L F K HGLGNDFI++D  N  +  ++PEQ  +L DR+ G+G D ++       D D+  RIFN+DG E E CGNG RCF R++
Sbjct:    3 LKFTKMHGLGNDFIVIDAVNQ-QISLSPEQLRRLADRHLGVGCDQILLIEKAEGDADFRYRIFNADGGEVEQCGNGARCFVRYV 85          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_LEPBL (Diaminopimelate epimerase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=dapF PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.105e-17
Identity = 43/84 (51.19%), Postives = 59/84 (70.24%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            L F K  G+GND+I +D+  +   R+TPEQ +K+ +RNFGIG+DGVIF +      D+ M ++NSDGS  EMCGNG RC A++I
Sbjct:    4 LKFTKMEGIGNDYIYIDSTQANI-RLTPEQIQKISNRNFGIGSDGVIF-IRNSKQGDFMMDMYNSDGSSSEMCGNGIRCVAKYI 85          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_LEPBJ (Diaminopimelate epimerase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=dapF PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.105e-17
Identity = 43/84 (51.19%), Postives = 59/84 (70.24%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            L F K  G+GND+I +D+  +   R+TPEQ +K+ +RNFGIG+DGVIF +      D+ M ++NSDGS  EMCGNG RC A++I
Sbjct:    4 LKFTKMEGIGNDYIYIDSTQANI-RLTPEQIQKISNRNFGIGSDGVIF-IRNSKQGDFMMDMYNSDGSSSEMCGNGIRCVAKYI 85          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_HAHCH (Diaminopimelate epimerase OS=Hahella chejuensis (strain KCTC 2396) GN=dapF PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.105e-17
Identity = 45/85 (52.94%), Postives = 55/85 (64.71%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAML-GVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            + F K HGLGNDF++VD   S      PEQ  +L DRNFG+G D ++     G  D D+  RIFN+DGSE E CGNG RCFARF+
Sbjct:    3 IKFTKMHGLGNDFMVVD-LISQHAHFRPEQVRRLADRNFGVGFDQLLIVEPPGRPDADFRYRIFNADGSEVEQCGNGARCFARFV 86          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_AZOSE (Diaminopimelate epimerase OS=Azoarcus sp. (strain EbN1) GN=dapF PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.444e-17
Identity = 44/86 (51.16%), Postives = 56/86 (65.12%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDN-RNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            L F K HGLGNDF+++D  R S +  +TPEQ  +L DR+FGIG D ++        D D+  RIFN+DG E E CGNG RCF RF+
Sbjct:    3 LRFTKMHGLGNDFVVIDAIRQSVD--LTPEQVRRLADRHFGIGCDQLLVVEEATRPDVDFRYRIFNADGGEVEQCGNGARCFVRFV 86          
The following BLAST results are available for this feature:
BLAST of FC876353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 275
Match NameE-valueIdentityDescription
DAPF_SHEAM8.463e-1852.94Diaminopimelate epimerase OS=Shewanella amazonensi... [more]
DAPF_PROMT8.463e-1850.57Diaminopimelate epimerase OS=Prochlorococcus marin... [more]
DAPF_PROM18.463e-1850.57Diaminopimelate epimerase OS=Prochlorococcus marin... [more]
DAPF_NATTJ8.463e-1852.27Diaminopimelate epimerase OS=Natranaerobius thermo... [more]
DAPF_LEPBA8.463e-1848.81Diaminopimelate epimerase OS=Leptospira biflexa se... [more]
DAPF_NITMU1.105e-1747.62Diaminopimelate epimerase OS=Nitrosospira multifor... [more]
DAPF_LEPBL1.105e-1751.19Diaminopimelate epimerase OS=Leptospira borgpeters... [more]
DAPF_LEPBJ1.105e-1751.19Diaminopimelate epimerase OS=Leptospira borgpeters... [more]
DAPF_HAHCH1.105e-1752.94Diaminopimelate epimerase OS=Hahella chejuensis (s... [more]
DAPF_AZOSE1.444e-1751.16Diaminopimelate epimerase OS=Azoarcus sp. (strain ... [more]

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Properties
Property NameValue
Genbank descriptionC32003G07EF DevOvary1 Citrus clementina cDNA clone C32003G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876353 ID=FC876353; Name=FC876353; organism=Citrus clementina; type=EST; length=666bp
GGAATACGGTAACGTTTCTGCAGGAAATGCAGAGGATACCGTCTCTTCTC
TTGCACAAAACCTAGATTCTCTTTTCAACGTAACGGCACTGTATCACACA
AACTAAACCAACCACCGCATTTGACATTACCGCGACCAAGAGCAGAAACA
GAAAAGCCGTCAAAGCAAGCATCGAGCATGGCCATAACCACCACGCGCTC
ACTCTCCGTCACGCCCGTAACTCGCCGCTCTGCCACTCCAATCAATCCTC
TTCGATCCTCCTCTTTATCTTATTCGTTGACTCGACCATTCAGTTCCAAT
TTGACTCTCAAAGTCCCTAGCTTCCGCGTCTCGGCATCTTCTATGAGCAG
CATTCACGCTCCGGAGAGCGCTTCGCGAACCTCTTTTCTTGACCGCAGAG
AGAGCGGCTTCCTTCATTTCGTCAAGTACCATGGCCTCGGCAACGACTTC
ATTTTGGTTGATAACAGGAATTCTACGGAACCTAGGATAACTCCGGAGCA
AGCGGAGAAGCTGTGTGATCGGAATTTTGGCATTGGGGCCGATGGAGTGA
TCTTCGCCATGCTTGGAGTCAATGACACTGATTATACAATGAGAATTTTC
AATTCTGATGGTAGCGAGCCAGAGATGTGTGGCAATGGAGNTCGATGCTT
TGCCAGATTCATTGCT
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