FC876353
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_SHEAM (Diaminopimelate epimerase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=dapF PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 8.463e-18 Identity = 45/85 (52.94%), Postives = 56/85 (65.88%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 +HF K HGLGNDF++VD +PEQ +L DRNFGIG D ++ + D D+ RIFN+DGSE E CGNG RCFARF+ Sbjct: 2 IHFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNADGSEVEQCGNGARCFARFV 85
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_PROMT (Diaminopimelate epimerase OS=Prochlorococcus marinus (strain NATL2A) GN=dapF PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 8.463e-18 Identity = 44/87 (50.57%), Postives = 56/87 (64.37%), Query Frame = 1 Query: 415 HFVKYHGLGNDFILVDNRNSTEPRITPEQA----EKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 +F KY GLGNDFI+ D R++ + + E LC+RNFGIGADG+I + N M+I+NSDGSEPEMCGNG RC F+ Sbjct: 4 NFSKYQGLGNDFIIFDARSNNLDHLFSKNKDNFIEHLCNRNFGIGADGIILILESNNKCFVRMKIYNSDGSEPEMCGNGIRCLIAFL 90
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_PROM1 (Diaminopimelate epimerase OS=Prochlorococcus marinus (strain NATL1A) GN=dapF PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 8.463e-18 Identity = 44/87 (50.57%), Postives = 56/87 (64.37%), Query Frame = 1 Query: 415 HFVKYHGLGNDFILVDNRNSTEPRITPEQA----EKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 +F KY GLGNDFI+ D R++ + + E LC+RNFGIGADG+I + N M+I+NSDGSEPEMCGNG RC F+ Sbjct: 4 NFSKYQGLGNDFIIFDARSNNLDHLFSKNKDNFIEHLCNRNFGIGADGIILILESNNKCFVRMKIYNSDGSEPEMCGNGIRCLIAFL 90
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_NATTJ (Diaminopimelate epimerase OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=dapF PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 8.463e-18 Identity = 46/88 (52.27%), Postives = 59/88 (67.05%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN---DTDYTMRIFNSDGSEPEMCGNGXRCFARFIA 666 + F K HGLGNDFIL+ + R P+ A++LCDR FGIGADG++ N + DY MRI+NSDGSE EMCGN RC A+++A Sbjct: 1 MKFEKMHGLGNDFILMKDFQ----RNYPDLAKRLCDRRFGIGADGLVIYSSCKNSNINADYQMRIYNSDGSEAEMCGNAIRCLAKYLA 84
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_LEPBA (Diaminopimelate epimerase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=dapF PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 8.463e-18 Identity = 41/84 (48.81%), Postives = 58/84 (69.05%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 ++F K G+GND++ +D + R++PEQ +KL DRNFGIG DGVIF + N ++ M ++NSDGS EMCGNG RC +F+ Sbjct: 3 INFTKMEGIGNDYVYID-ATKNDIRLSPEQIQKLSDRNFGIGGDGVIF-IRNSNSGEFQMDMYNSDGSSSEMCGNGVRCVGKFV 84
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_NITMU (Diaminopimelate epimerase OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=dapF PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.105e-17 Identity = 40/84 (47.62%), Postives = 54/84 (64.29%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 L F K HGLGNDFI++D N + ++PEQ +L DR+ G+G D ++ D D+ RIFN+DG E E CGNG RCF R++ Sbjct: 3 LKFTKMHGLGNDFIVIDAVNQ-QISLSPEQLRRLADRHLGVGCDQILLIEKAEGDADFRYRIFNADGGEVEQCGNGARCFVRYV 85
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_LEPBL (Diaminopimelate epimerase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=dapF PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.105e-17 Identity = 43/84 (51.19%), Postives = 59/84 (70.24%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 L F K G+GND+I +D+ + R+TPEQ +K+ +RNFGIG+DGVIF + D+ M ++NSDGS EMCGNG RC A++I Sbjct: 4 LKFTKMEGIGNDYIYIDSTQANI-RLTPEQIQKISNRNFGIGSDGVIF-IRNSKQGDFMMDMYNSDGSSSEMCGNGIRCVAKYI 85
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_LEPBJ (Diaminopimelate epimerase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=dapF PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.105e-17 Identity = 43/84 (51.19%), Postives = 59/84 (70.24%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 L F K G+GND+I +D+ + R+TPEQ +K+ +RNFGIG+DGVIF + D+ M ++NSDGS EMCGNG RC A++I Sbjct: 4 LKFTKMEGIGNDYIYIDSTQANI-RLTPEQIQKISNRNFGIGSDGVIF-IRNSKQGDFMMDMYNSDGSSSEMCGNGIRCVAKYI 85
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_HAHCH (Diaminopimelate epimerase OS=Hahella chejuensis (strain KCTC 2396) GN=dapF PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.105e-17 Identity = 45/85 (52.94%), Postives = 55/85 (64.71%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAML-GVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 + F K HGLGNDF++VD S PEQ +L DRNFG+G D ++ G D D+ RIFN+DGSE E CGNG RCFARF+ Sbjct: 3 IKFTKMHGLGNDFMVVD-LISQHAHFRPEQVRRLADRNFGVGFDQLLIVEPPGRPDADFRYRIFNADGSEVEQCGNGARCFARFV 86
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_AZOSE (Diaminopimelate epimerase OS=Azoarcus sp. (strain EbN1) GN=dapF PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.444e-17 Identity = 44/86 (51.16%), Postives = 56/86 (65.12%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDN-RNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 L F K HGLGNDF+++D R S + +TPEQ +L DR+FGIG D ++ D D+ RIFN+DG E E CGNG RCF RF+ Sbjct: 3 LRFTKMHGLGNDFVVIDAIRQSVD--LTPEQVRRLADRHFGIGCDQLLVVEEATRPDVDFRYRIFNADGGEVEQCGNGARCFVRFV 86 The following BLAST results are available for this feature:
BLAST of FC876353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 275
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876353 ID=FC876353; Name=FC876353; organism=Citrus clementina; type=EST; length=666bpback to top |