FC876353
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_THETN (Diaminopimelate epimerase OS=Thermoanaerobacter tengcongensis GN=dapF PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.885e-17 Identity = 45/84 (53.57%), Postives = 58/84 (69.05%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 + F K HGLGNDFI+++ + E E A KLCDR+FGIGADG++ + D MRIFN+DGSE EMCGNG RCFA+++ Sbjct: 1 MRFTKMHGLGNDFIVIE---AVEGVDYSELAVKLCDRHFGIGADGLLVVEPS-HIADIKMRIFNADGSEAEMCGNGSRCFAKYV 80
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_SHESH (Diaminopimelate epimerase OS=Shewanella sediminis (strain HAW-EB3) GN=dapF PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.885e-17 Identity = 44/85 (51.76%), Postives = 56/85 (65.88%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 +HF K HGLGNDF++VD +PEQ ++L DRNFGIG D ++ + D D+ RIFN+DG E E CGNG RCFARF+ Sbjct: 2 IHFTKMHGLGNDFMVVDGVTQNV-FFSPEQIKRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNADGGEVEQCGNGARCFARFV 85
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_CELJU (Diaminopimelate epimerase OS=Cellvibrio japonicus (strain Ueda107) GN=dapF PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.885e-17 Identity = 43/85 (50.59%), Postives = 57/85 (67.06%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 + F K HGLGNDF+++D + T R+TPE+ KL DR+FG+G D V+ + + D+ RIFN DGSE E CGNG RCFA F+ Sbjct: 3 IRFSKMHGLGNDFVVIDGISQTV-RLTPEKIRKLADRHFGVGCDQVLLVEIPEQPNVDFRYRIFNCDGSEVENCGNGARCFAVFV 86
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_SHEWM (Diaminopimelate epimerase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=dapF PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.462e-17 Identity = 43/85 (50.59%), Postives = 56/85 (65.88%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 +HF K HGLGNDF++VD +PEQ ++L DRNFG+G D ++ + D D+ RIFN+DG E E CGNG RCFARF+ Sbjct: 2 IHFAKMHGLGNDFMVVDGVTQNV-FFSPEQIKRLADRNFGVGFDQLLLVEPPYDPDLDFHYRIFNADGGEVEQCGNGARCFARFV 85
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_SACD2 (Diaminopimelate epimerase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=dapF PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.462e-17 Identity = 45/85 (52.94%), Postives = 56/85 (65.88%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 L F K HGLGNDF+++D S ITPE+A +L DR+FG+G D V+ + D D+ RIFN DGSE E CGNG RCFA F+ Sbjct: 3 LRFTKMHGLGNDFVMID-AISQRVTITPERARQLADRHFGVGCDQVLVVETPDSPDADFKYRIFNHDGSEVENCGNGARCFAVFV 86
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_HELMI (Diaminopimelate epimerase OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=dapF PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.462e-17 Identity = 45/89 (50.56%), Postives = 59/89 (66.29%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQ-----AEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 + FVK HGLGNDFI+V N+ EP + + A ++CDR++GIG DG+I + + D RI NSDGSEPEMCGNG RC AR++ Sbjct: 1 MEFVKMHGLGNDFIVV---NAMEPPLLDREDWEEIAVRICDRHYGIGGDGLIL-LFPSDKADIRWRILNSDGSEPEMCGNGIRCLARYV 85
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_META3 (Diaminopimelate epimerase OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=dapF PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 3.216e-17 Identity = 47/88 (53.41%), Postives = 58/88 (65.91%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAE---KLCDRNFGIGADGVIFAMLGVNDT-DYTMRIFNSDGSEPEMCGNGXRCFARFI 663 L+F K HGLGND+I++ N E E+AE K+C R F IGADGVIF ++ D RIFNSDGSE EMCGNG RCF++F+ Sbjct: 3 LNFTKMHGLGNDYIVI-NEFDGEKIKEDEKAEFSKKICKRGFSIGADGVIFVQPATDEKYDIRFRIFNSDGSEAEMCGNGIRCFSKFV 89
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_SHEDO (Diaminopimelate epimerase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=dapF PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 4.200e-17 Identity = 43/85 (50.59%), Postives = 56/85 (65.88%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 +HF K HGLGNDF++VD +PEQ +L +RNFG+G D ++ + D D+ RIFN+DGSE E CGNG RCFARF+ Sbjct: 2 IHFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLANRNFGVGFDQLLLVEPPYDPDLDFHYRIFNADGSEVEQCGNGARCFARFV 85
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_METTH (Diaminopimelate epimerase OS=Methanobacterium thermoautotrophicum GN=dapF PE=3 SV=2) HSP 1 Score: 87.8113 bits (216), Expect = 5.485e-17 Identity = 40/84 (47.62%), Postives = 53/84 (63.10%), Query Frame = 1 Query: 418 FVKYHGLGNDFILVDN--RNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 F K HGLGND++++D + PE ++C R F +GADGVIF + D RIFN+DGSE EMCGNG RCF++F+ Sbjct: 4 FSKMHGLGNDYVVIDESAQECIPEDKKPEFVREVCTRGFSVGADGVIFVQPASGEGDIRFRIFNADGSEAEMCGNGIRCFSKFV 87
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_SHESW (Diaminopimelate epimerase OS=Shewanella sp. (strain W3-18-1) GN=dapF PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 7.164e-17 Identity = 44/85 (51.76%), Postives = 55/85 (64.71%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 + F K HGLGNDF++VD +PEQ +L DRNFGIG D ++ + D D+ RIFN+DGSE E CGNG RCFARF+ Sbjct: 2 IQFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNADGSEVEQCGNGARCFARFV 85 The following BLAST results are available for this feature:
BLAST of FC876353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 275
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876353 ID=FC876353; Name=FC876353; organism=Citrus clementina; type=EST; length=666bpback to top |