FC876353

Overview
NameFC876353
Unique NameFC876353
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length666
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10903 contig Ccv1_Contig10903:5..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_THETN (Diaminopimelate epimerase OS=Thermoanaerobacter tengcongensis GN=dapF PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.885e-17
Identity = 45/84 (53.57%), Postives = 58/84 (69.05%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            + F K HGLGNDFI+++   + E     E A KLCDR+FGIGADG++      +  D  MRIFN+DGSE EMCGNG RCFA+++
Sbjct:    1 MRFTKMHGLGNDFIVIE---AVEGVDYSELAVKLCDRHFGIGADGLLVVEPS-HIADIKMRIFNADGSEAEMCGNGSRCFAKYV 80          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_SHESH (Diaminopimelate epimerase OS=Shewanella sediminis (strain HAW-EB3) GN=dapF PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.885e-17
Identity = 44/85 (51.76%), Postives = 56/85 (65.88%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            +HF K HGLGNDF++VD         +PEQ ++L DRNFGIG D ++      + D D+  RIFN+DG E E CGNG RCFARF+
Sbjct:    2 IHFTKMHGLGNDFMVVDGVTQNV-FFSPEQIKRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNADGGEVEQCGNGARCFARFV 85          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_CELJU (Diaminopimelate epimerase OS=Cellvibrio japonicus (strain Ueda107) GN=dapF PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.885e-17
Identity = 43/85 (50.59%), Postives = 57/85 (67.06%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            + F K HGLGNDF+++D  + T  R+TPE+  KL DR+FG+G D V+   +    + D+  RIFN DGSE E CGNG RCFA F+
Sbjct:    3 IRFSKMHGLGNDFVVIDGISQTV-RLTPEKIRKLADRHFGVGCDQVLLVEIPEQPNVDFRYRIFNCDGSEVENCGNGARCFAVFV 86          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_SHEWM (Diaminopimelate epimerase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=dapF PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.462e-17
Identity = 43/85 (50.59%), Postives = 56/85 (65.88%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            +HF K HGLGNDF++VD         +PEQ ++L DRNFG+G D ++      + D D+  RIFN+DG E E CGNG RCFARF+
Sbjct:    2 IHFAKMHGLGNDFMVVDGVTQNV-FFSPEQIKRLADRNFGVGFDQLLLVEPPYDPDLDFHYRIFNADGGEVEQCGNGARCFARFV 85          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_SACD2 (Diaminopimelate epimerase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=dapF PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.462e-17
Identity = 45/85 (52.94%), Postives = 56/85 (65.88%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            L F K HGLGNDF+++D   S    ITPE+A +L DR+FG+G D V+      + D D+  RIFN DGSE E CGNG RCFA F+
Sbjct:    3 LRFTKMHGLGNDFVMID-AISQRVTITPERARQLADRHFGVGCDQVLVVETPDSPDADFKYRIFNHDGSEVENCGNGARCFAVFV 86          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_HELMI (Diaminopimelate epimerase OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=dapF PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.462e-17
Identity = 45/89 (50.56%), Postives = 59/89 (66.29%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQ-----AEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            + FVK HGLGNDFI+V   N+ EP +   +     A ++CDR++GIG DG+I  +   +  D   RI NSDGSEPEMCGNG RC AR++
Sbjct:    1 MEFVKMHGLGNDFIVV---NAMEPPLLDREDWEEIAVRICDRHYGIGGDGLIL-LFPSDKADIRWRILNSDGSEPEMCGNGIRCLARYV 85          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_META3 (Diaminopimelate epimerase OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=dapF PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.216e-17
Identity = 47/88 (53.41%), Postives = 58/88 (65.91%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAE---KLCDRNFGIGADGVIFAMLGVNDT-DYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            L+F K HGLGND+I++ N    E     E+AE   K+C R F IGADGVIF     ++  D   RIFNSDGSE EMCGNG RCF++F+
Sbjct:    3 LNFTKMHGLGNDYIVI-NEFDGEKIKEDEKAEFSKKICKRGFSIGADGVIFVQPATDEKYDIRFRIFNSDGSEAEMCGNGIRCFSKFV 89          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_SHEDO (Diaminopimelate epimerase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=dapF PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.200e-17
Identity = 43/85 (50.59%), Postives = 56/85 (65.88%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            +HF K HGLGNDF++VD         +PEQ  +L +RNFG+G D ++      + D D+  RIFN+DGSE E CGNG RCFARF+
Sbjct:    2 IHFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLANRNFGVGFDQLLLVEPPYDPDLDFHYRIFNADGSEVEQCGNGARCFARFV 85          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_METTH (Diaminopimelate epimerase OS=Methanobacterium thermoautotrophicum GN=dapF PE=3 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 5.485e-17
Identity = 40/84 (47.62%), Postives = 53/84 (63.10%), Query Frame = 1
Query:  418 FVKYHGLGNDFILVDN--RNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            F K HGLGND++++D   +        PE   ++C R F +GADGVIF      + D   RIFN+DGSE EMCGNG RCF++F+
Sbjct:    4 FSKMHGLGNDYVVIDESAQECIPEDKKPEFVREVCTRGFSVGADGVIFVQPASGEGDIRFRIFNADGSEAEMCGNGIRCFSKFV 87          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_SHESW (Diaminopimelate epimerase OS=Shewanella sp. (strain W3-18-1) GN=dapF PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.164e-17
Identity = 44/85 (51.76%), Postives = 55/85 (64.71%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            + F K HGLGNDF++VD         +PEQ  +L DRNFGIG D ++      + D D+  RIFN+DGSE E CGNG RCFARF+
Sbjct:    2 IQFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNADGSEVEQCGNGARCFARFV 85          
The following BLAST results are available for this feature:
BLAST of FC876353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 275
Match NameE-valueIdentityDescription
DAPF_THETN1.885e-1753.57Diaminopimelate epimerase OS=Thermoanaerobacter te... [more]
DAPF_SHESH1.885e-1751.76Diaminopimelate epimerase OS=Shewanella sediminis ... [more]
DAPF_CELJU1.885e-1750.59Diaminopimelate epimerase OS=Cellvibrio japonicus ... [more]
DAPF_SHEWM2.462e-1750.59Diaminopimelate epimerase OS=Shewanella woodyi (st... [more]
DAPF_SACD22.462e-1752.94Diaminopimelate epimerase OS=Saccharophagus degrad... [more]
DAPF_HELMI2.462e-1750.56Diaminopimelate epimerase OS=Heliobacterium modest... [more]
DAPF_META33.216e-1753.41Diaminopimelate epimerase OS=Methanococcus aeolicu... [more]
DAPF_SHEDO4.200e-1750.59Diaminopimelate epimerase OS=Shewanella denitrific... [more]
DAPF_METTH5.485e-1747.62Diaminopimelate epimerase OS=Methanobacterium ther... [more]
DAPF_SHESW7.164e-1751.76Diaminopimelate epimerase OS=Shewanella sp. (strai... [more]

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Properties
Property NameValue
Genbank descriptionC32003G07EF DevOvary1 Citrus clementina cDNA clone C32003G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876353 ID=FC876353; Name=FC876353; organism=Citrus clementina; type=EST; length=666bp
GGAATACGGTAACGTTTCTGCAGGAAATGCAGAGGATACCGTCTCTTCTC
TTGCACAAAACCTAGATTCTCTTTTCAACGTAACGGCACTGTATCACACA
AACTAAACCAACCACCGCATTTGACATTACCGCGACCAAGAGCAGAAACA
GAAAAGCCGTCAAAGCAAGCATCGAGCATGGCCATAACCACCACGCGCTC
ACTCTCCGTCACGCCCGTAACTCGCCGCTCTGCCACTCCAATCAATCCTC
TTCGATCCTCCTCTTTATCTTATTCGTTGACTCGACCATTCAGTTCCAAT
TTGACTCTCAAAGTCCCTAGCTTCCGCGTCTCGGCATCTTCTATGAGCAG
CATTCACGCTCCGGAGAGCGCTTCGCGAACCTCTTTTCTTGACCGCAGAG
AGAGCGGCTTCCTTCATTTCGTCAAGTACCATGGCCTCGGCAACGACTTC
ATTTTGGTTGATAACAGGAATTCTACGGAACCTAGGATAACTCCGGAGCA
AGCGGAGAAGCTGTGTGATCGGAATTTTGGCATTGGGGCCGATGGAGTGA
TCTTCGCCATGCTTGGAGTCAATGACACTGATTATACAATGAGAATTTTC
AATTCTGATGGTAGCGAGCCAGAGATGTGTGGCAATGGAGNTCGATGCTT
TGCCAGATTCATTGCT
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