FC876353
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_SHEPC (Diaminopimelate epimerase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=dapF PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 7.164e-17 Identity = 44/85 (51.76%), Postives = 55/85 (64.71%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 + F K HGLGNDF++VD +PEQ +L DRNFGIG D ++ + D D+ RIFN+DGSE E CGNG RCFARF+ Sbjct: 2 IQFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNADGSEVEQCGNGARCFARFV 85
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_RALSO (Diaminopimelate epimerase OS=Ralstonia solanacearum GN=dapF PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.222e-16 Identity = 41/85 (48.24%), Postives = 53/85 (62.35%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 LHF K HG GNDF+++D +T TPEQ + DR+FG+GAD ++ D D+ RIFN DG E E CGNG RCF +F+ Sbjct: 3 LHFTKMHGAGNDFVVLDGI-ATPIDFTPEQWRAIADRHFGVGADQLLLVERSTRPDVDFRYRIFNHDGGEVEQCGNGARCFVKFV 86
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_SHEB9 (Diaminopimelate epimerase OS=Shewanella baltica (strain OS195) GN=dapF PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.596e-16 Identity = 43/85 (50.59%), Postives = 55/85 (64.71%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 + F K HGLGNDF++VD +PEQ +L DRNFGIG D ++ + D D+ RIFN+DG+E E CGNG RCFARF+ Sbjct: 2 IQFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNADGTEVEQCGNGARCFARFV 85
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_SHEB8 (Diaminopimelate epimerase OS=Shewanella baltica (strain OS185) GN=dapF PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.596e-16 Identity = 43/85 (50.59%), Postives = 55/85 (64.71%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 + F K HGLGNDF++VD +PEQ +L DRNFGIG D ++ + D D+ RIFN+DG+E E CGNG RCFARF+ Sbjct: 2 IQFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNADGTEVEQCGNGARCFARFV 85
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_SHEB5 (Diaminopimelate epimerase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=dapF PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.596e-16 Identity = 43/85 (50.59%), Postives = 55/85 (64.71%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 + F K HGLGNDF++VD +PEQ +L DRNFGIG D ++ + D D+ RIFN+DG+E E CGNG RCFARF+ Sbjct: 2 IQFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNADGTEVEQCGNGARCFARFV 85
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_SHEB2 (Diaminopimelate epimerase OS=Shewanella baltica (strain OS223) GN=dapF PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.596e-16 Identity = 43/85 (50.59%), Postives = 55/85 (64.71%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 + F K HGLGNDF++VD +PEQ +L DRNFGIG D ++ + D D+ RIFN+DG+E E CGNG RCFARF+ Sbjct: 2 IQFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNADGTEVEQCGNGARCFARFV 85
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_HALOH (Diaminopimelate epimerase OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=dapF PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 2.084e-16 Identity = 43/85 (50.59%), Postives = 58/85 (68.24%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 L F K HG GNDFI+V+ N + + + A +LC R+F IGADG+I + + + D+ MRIFN+DGSE EMCGNG RCFA ++ Sbjct: 3 LSFTKMHGTGNDFIMVNGSNYPDLDFS-KLARQLCRRHFSIGADGLIIVLPPESVEHDFRMRIFNADGSEAEMCGNGIRCFAHYL 86
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_UNCMA (Diaminopimelate epimerase OS=Uncultured methanogenic archaeon RC-I GN=dapF PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 2.722e-16 Identity = 43/84 (51.19%), Postives = 54/84 (64.29%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQ-AEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARF 660 + F K HG GNDFI++D + P A+K+C R FGIGADGV+F ++ T MRIFN DGSE EMCGNG RCF ++ Sbjct: 4 IKFTKMHGNGNDFIVIDEFENPVPEEKKAAFAKKVCHRRFGIGADGVLFLAKPLH-TSLHMRIFNEDGSEAEMCGNGIRCFVKY 86
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_BURVG (Diaminopimelate epimerase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=dapF PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 2.722e-16 Identity = 41/85 (48.24%), Postives = 53/85 (62.35%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADG-VIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 L F K HG GNDF+++D + T P +T Q L DR+FGIGAD ++ V+ D+ RIFN DG E E CGNG RCF +F+ Sbjct: 3 LSFTKMHGAGNDFVVLDGYSHTLPPLTDVQVRALADRHFGIGADQLLVVEKPTVDGADFKYRIFNCDGGEVEHCGNGARCFVKFV 87
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF1_ANASP (Diaminopimelate epimerase 1 OS=Anabaena sp. (strain PCC 7120) GN=dapF1 PE=3 SV=2) HSP 1 Score: 85.5001 bits (210), Expect = 2.722e-16 Identity = 37/84 (44.05%), Postives = 57/84 (67.86%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 + F KYH LGND+++++ ++ P +TPE+ + +C RNFGIG+DG++ L + +RIFN DGSE E GNG R F+R++ Sbjct: 1 MKFYKYHALGNDYLVINPQDLKFP-LTPEKIKIICHRNFGIGSDGILLGPLASTKAQFALRIFNPDGSEAEKSGNGLRIFSRYL 83 The following BLAST results are available for this feature:
BLAST of FC876353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 275
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876353 ID=FC876353; Name=FC876353; organism=Citrus clementina; type=EST; length=666bpback to top |