FC876353

Overview
NameFC876353
Unique NameFC876353
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length666
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10903 contig Ccv1_Contig10903:5..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_SHEPC (Diaminopimelate epimerase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=dapF PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.164e-17
Identity = 44/85 (51.76%), Postives = 55/85 (64.71%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            + F K HGLGNDF++VD         +PEQ  +L DRNFGIG D ++      + D D+  RIFN+DGSE E CGNG RCFARF+
Sbjct:    2 IQFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNADGSEVEQCGNGARCFARFV 85          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_RALSO (Diaminopimelate epimerase OS=Ralstonia solanacearum GN=dapF PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.222e-16
Identity = 41/85 (48.24%), Postives = 53/85 (62.35%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            LHF K HG GNDF+++D   +T    TPEQ   + DR+FG+GAD ++        D D+  RIFN DG E E CGNG RCF +F+
Sbjct:    3 LHFTKMHGAGNDFVVLDGI-ATPIDFTPEQWRAIADRHFGVGADQLLLVERSTRPDVDFRYRIFNHDGGEVEQCGNGARCFVKFV 86          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_SHEB9 (Diaminopimelate epimerase OS=Shewanella baltica (strain OS195) GN=dapF PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.596e-16
Identity = 43/85 (50.59%), Postives = 55/85 (64.71%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            + F K HGLGNDF++VD         +PEQ  +L DRNFGIG D ++      + D D+  RIFN+DG+E E CGNG RCFARF+
Sbjct:    2 IQFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNADGTEVEQCGNGARCFARFV 85          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_SHEB8 (Diaminopimelate epimerase OS=Shewanella baltica (strain OS185) GN=dapF PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.596e-16
Identity = 43/85 (50.59%), Postives = 55/85 (64.71%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            + F K HGLGNDF++VD         +PEQ  +L DRNFGIG D ++      + D D+  RIFN+DG+E E CGNG RCFARF+
Sbjct:    2 IQFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNADGTEVEQCGNGARCFARFV 85          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_SHEB5 (Diaminopimelate epimerase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=dapF PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.596e-16
Identity = 43/85 (50.59%), Postives = 55/85 (64.71%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            + F K HGLGNDF++VD         +PEQ  +L DRNFGIG D ++      + D D+  RIFN+DG+E E CGNG RCFARF+
Sbjct:    2 IQFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNADGTEVEQCGNGARCFARFV 85          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_SHEB2 (Diaminopimelate epimerase OS=Shewanella baltica (strain OS223) GN=dapF PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.596e-16
Identity = 43/85 (50.59%), Postives = 55/85 (64.71%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            + F K HGLGNDF++VD         +PEQ  +L DRNFGIG D ++      + D D+  RIFN+DG+E E CGNG RCFARF+
Sbjct:    2 IQFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNADGTEVEQCGNGARCFARFV 85          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_HALOH (Diaminopimelate epimerase OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=dapF PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.084e-16
Identity = 43/85 (50.59%), Postives = 58/85 (68.24%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            L F K HG GNDFI+V+  N  +   + + A +LC R+F IGADG+I  +   + + D+ MRIFN+DGSE EMCGNG RCFA ++
Sbjct:    3 LSFTKMHGTGNDFIMVNGSNYPDLDFS-KLARQLCRRHFSIGADGLIIVLPPESVEHDFRMRIFNADGSEAEMCGNGIRCFAHYL 86          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_UNCMA (Diaminopimelate epimerase OS=Uncultured methanogenic archaeon RC-I GN=dapF PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.722e-16
Identity = 43/84 (51.19%), Postives = 54/84 (64.29%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQ-AEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARF 660
            + F K HG GNDFI++D   +  P       A+K+C R FGIGADGV+F    ++ T   MRIFN DGSE EMCGNG RCF ++
Sbjct:    4 IKFTKMHGNGNDFIVIDEFENPVPEEKKAAFAKKVCHRRFGIGADGVLFLAKPLH-TSLHMRIFNEDGSEAEMCGNGIRCFVKY 86          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_BURVG (Diaminopimelate epimerase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=dapF PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.722e-16
Identity = 41/85 (48.24%), Postives = 53/85 (62.35%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADG-VIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            L F K HG GNDF+++D  + T P +T  Q   L DR+FGIGAD  ++     V+  D+  RIFN DG E E CGNG RCF +F+
Sbjct:    3 LSFTKMHGAGNDFVVLDGYSHTLPPLTDVQVRALADRHFGIGADQLLVVEKPTVDGADFKYRIFNCDGGEVEHCGNGARCFVKFV 87          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF1_ANASP (Diaminopimelate epimerase 1 OS=Anabaena sp. (strain PCC 7120) GN=dapF1 PE=3 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.722e-16
Identity = 37/84 (44.05%), Postives = 57/84 (67.86%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            + F KYH LGND+++++ ++   P +TPE+ + +C RNFGIG+DG++   L      + +RIFN DGSE E  GNG R F+R++
Sbjct:    1 MKFYKYHALGNDYLVINPQDLKFP-LTPEKIKIICHRNFGIGSDGILLGPLASTKAQFALRIFNPDGSEAEKSGNGLRIFSRYL 83          
The following BLAST results are available for this feature:
BLAST of FC876353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 275
Match NameE-valueIdentityDescription
DAPF_SHEPC7.164e-1751.76Diaminopimelate epimerase OS=Shewanella putrefacie... [more]
DAPF_RALSO1.222e-1648.24Diaminopimelate epimerase OS=Ralstonia solanacearu... [more]
DAPF_SHEB91.596e-1650.59Diaminopimelate epimerase OS=Shewanella baltica (s... [more]
DAPF_SHEB81.596e-1650.59Diaminopimelate epimerase OS=Shewanella baltica (s... [more]
DAPF_SHEB51.596e-1650.59Diaminopimelate epimerase OS=Shewanella baltica (s... [more]
DAPF_SHEB21.596e-1650.59Diaminopimelate epimerase OS=Shewanella baltica (s... [more]
DAPF_HALOH2.084e-1650.59Diaminopimelate epimerase OS=Halothermothrix oreni... [more]
DAPF_UNCMA2.722e-1651.19Diaminopimelate epimerase OS=Uncultured methanogen... [more]
DAPF_BURVG2.722e-1648.24Diaminopimelate epimerase OS=Burkholderia vietnami... [more]
DAPF1_ANASP2.722e-1644.05Diaminopimelate epimerase 1 OS=Anabaena sp. (strai... [more]

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Properties
Property NameValue
Genbank descriptionC32003G07EF DevOvary1 Citrus clementina cDNA clone C32003G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876353 ID=FC876353; Name=FC876353; organism=Citrus clementina; type=EST; length=666bp
GGAATACGGTAACGTTTCTGCAGGAAATGCAGAGGATACCGTCTCTTCTC
TTGCACAAAACCTAGATTCTCTTTTCAACGTAACGGCACTGTATCACACA
AACTAAACCAACCACCGCATTTGACATTACCGCGACCAAGAGCAGAAACA
GAAAAGCCGTCAAAGCAAGCATCGAGCATGGCCATAACCACCACGCGCTC
ACTCTCCGTCACGCCCGTAACTCGCCGCTCTGCCACTCCAATCAATCCTC
TTCGATCCTCCTCTTTATCTTATTCGTTGACTCGACCATTCAGTTCCAAT
TTGACTCTCAAAGTCCCTAGCTTCCGCGTCTCGGCATCTTCTATGAGCAG
CATTCACGCTCCGGAGAGCGCTTCGCGAACCTCTTTTCTTGACCGCAGAG
AGAGCGGCTTCCTTCATTTCGTCAAGTACCATGGCCTCGGCAACGACTTC
ATTTTGGTTGATAACAGGAATTCTACGGAACCTAGGATAACTCCGGAGCA
AGCGGAGAAGCTGTGTGATCGGAATTTTGGCATTGGGGCCGATGGAGTGA
TCTTCGCCATGCTTGGAGTCAATGACACTGATTATACAATGAGAATTTTC
AATTCTGATGGTAGCGAGCCAGAGATGTGTGGCAATGGAGNTCGATGCTT
TGCCAGATTCATTGCT
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