FC876353
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_SHESA (Diaminopimelate epimerase OS=Shewanella sp. (strain ANA-3) GN=dapF PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 3.556e-16 Identity = 43/85 (50.59%), Postives = 54/85 (63.53%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 + F K HGLGNDF++VD +PEQ +L DRNFGIG D ++ + D D+ RIFN+DG E E CGNG RCFARF+ Sbjct: 2 IQFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNADGGEVENCGNGARCFARFV 85
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_RALPJ (Diaminopimelate epimerase OS=Ralstonia pickettii (strain 12J) GN=dapF PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 3.556e-16 Identity = 41/85 (48.24%), Postives = 52/85 (61.18%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 LHF K HG GNDF+++D T TPEQ + DR+FG+GAD ++ D D+ RIFN DG E E CGNG RCF +F+ Sbjct: 3 LHFTKMHGAGNDFVVLDGIQ-TPIDFTPEQWAAIADRHFGVGADQLLLVERSTRPDVDFRYRIFNHDGGEVEHCGNGARCFVKFV 86
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_METTP (Diaminopimelate epimerase OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=dapF PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 3.556e-16 Identity = 45/84 (53.57%), Postives = 53/84 (63.10%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTE-PRITPEQAEK-LCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFAR 657 L FVK HG GNDFIL+D N P +A + LC RNFGIG DGV+F ++ D MR+F DGSE EMCGNG RC A+ Sbjct: 4 LEFVKLHGNGNDFILIDELNGERIPEDEKSEASRILCHRNFGIGGDGVLF-LVPSERADIGMRLFQPDGSEAEMCGNGIRCLAK 86
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_FLAPJ (Diaminopimelate epimerase OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=dapF PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 3.556e-16 Identity = 40/79 (50.63%), Postives = 50/79 (63.29%), Query Frame = 1 Query: 424 KYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARF 660 KY G GNDFI++DNR P+ +KLCDR FGIGADG+I + TD+ M +NSDG++ MCGNG RC F Sbjct: 5 KYQGTGNDFIMIDNRLQIFPKQNTALIQKLCDRRFGIGADGLIL-LENDQSTDFKMVYYNSDGNQSTMCGNGGRCLVAF 82
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_SHESR (Diaminopimelate epimerase OS=Shewanella sp. (strain MR-7) GN=dapF PE=3 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 4.644e-16 Identity = 42/85 (49.41%), Postives = 54/85 (63.53%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 + F K HGLGNDF++VD +PEQ +L DRNFG+G D ++ + D D+ RIFN+DG E E CGNG RCFARF+ Sbjct: 2 IQFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLADRNFGVGFDQLLLVEPPYDPDLDFHYRIFNADGGEVENCGNGARCFARFV 85
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_SHESM (Diaminopimelate epimerase OS=Shewanella sp. (strain MR-4) GN=dapF PE=3 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 4.644e-16 Identity = 42/85 (49.41%), Postives = 54/85 (63.53%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 + F K HGLGNDF++VD +PEQ +L DRNFG+G D ++ + D D+ RIFN+DG E E CGNG RCFARF+ Sbjct: 2 IQFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLADRNFGVGFDQLLLVEPPYDPDLDFHYRIFNADGGEVENCGNGARCFARFV 85
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_SHEON (Diaminopimelate epimerase OS=Shewanella oneidensis GN=dapF PE=3 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 4.644e-16 Identity = 42/85 (49.41%), Postives = 54/85 (63.53%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 + F K HGLGNDF++VD +PEQ +L DRNFG+G D ++ + D D+ RIFN+DG E E CGNG RCFARF+ Sbjct: 2 IQFTKMHGLGNDFMVVDGITQNV-FFSPEQIRRLADRNFGVGFDQLLLVEPPYDPDLDFHYRIFNADGGEVENCGNGARCFARFV 85
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_PSEE4 (Diaminopimelate epimerase OS=Pseudomonas entomophila (strain L48) GN=dapF PE=3 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 4.644e-16 Identity = 44/85 (51.76%), Postives = 55/85 (64.71%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 L F K HGLGNDF+++D S I P+ A++ DRN GIG D ++ N D D+ RIFN+DGSE E CGNG RCFARF+ Sbjct: 3 LRFTKMHGLGNDFMVLD-LVSQHAHIQPKHAKQWGDRNTGIGFDQLLIVEAPSNPDVDFRYRIFNADGSEVEQCGNGARCFARFV 86
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_PSYWF (Diaminopimelate epimerase OS=Psychrobacter sp. (strain PRwf-1) GN=dapF PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 6.065e-16 Identity = 43/85 (50.59%), Postives = 54/85 (63.53%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 + F K HGLGNDF+++D + +TPE L DRN GIG D ++ + D D+ RIFNSDGSE E CGNG RCFARF+ Sbjct: 3 IEFTKMHGLGNDFMVID-LVTQRLELTPELITLLADRNLGIGFDQLLVVEPPMRPDVDFRYRIFNSDGSEVEQCGNGARCFARFV 86
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_DESAP (Diaminopimelate epimerase OS=Desulforudis audaxviator (strain MP104C) GN=dapF PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 6.065e-16 Identity = 39/83 (46.99%), Postives = 52/83 (62.65%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARF 660 + F K HGLGNDF++V+ + P A ++CDR G+GADG++ +L D MR+FN DGSEPEMCGN RC A + Sbjct: 1 MEFTKMHGLGNDFVIVNGFGQSLPDDPGALARRVCDRRLGVGADGLVL-LLPSAAADLRMRVFNPDGSEPEMCGNAIRCVALY 82 The following BLAST results are available for this feature:
BLAST of FC876353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 275
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876353 ID=FC876353; Name=FC876353; organism=Citrus clementina; type=EST; length=666bpback to top |