FC876353

Overview
NameFC876353
Unique NameFC876353
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length666
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10903 contig Ccv1_Contig10903:5..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_SHESA (Diaminopimelate epimerase OS=Shewanella sp. (strain ANA-3) GN=dapF PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.556e-16
Identity = 43/85 (50.59%), Postives = 54/85 (63.53%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            + F K HGLGNDF++VD         +PEQ  +L DRNFGIG D ++      + D D+  RIFN+DG E E CGNG RCFARF+
Sbjct:    2 IQFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNADGGEVENCGNGARCFARFV 85          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_RALPJ (Diaminopimelate epimerase OS=Ralstonia pickettii (strain 12J) GN=dapF PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.556e-16
Identity = 41/85 (48.24%), Postives = 52/85 (61.18%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            LHF K HG GNDF+++D    T    TPEQ   + DR+FG+GAD ++        D D+  RIFN DG E E CGNG RCF +F+
Sbjct:    3 LHFTKMHGAGNDFVVLDGIQ-TPIDFTPEQWAAIADRHFGVGADQLLLVERSTRPDVDFRYRIFNHDGGEVEHCGNGARCFVKFV 86          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_METTP (Diaminopimelate epimerase OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=dapF PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.556e-16
Identity = 45/84 (53.57%), Postives = 53/84 (63.10%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTE-PRITPEQAEK-LCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFAR 657
            L FVK HG GNDFIL+D  N    P     +A + LC RNFGIG DGV+F ++     D  MR+F  DGSE EMCGNG RC A+
Sbjct:    4 LEFVKLHGNGNDFILIDELNGERIPEDEKSEASRILCHRNFGIGGDGVLF-LVPSERADIGMRLFQPDGSEAEMCGNGIRCLAK 86          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_FLAPJ (Diaminopimelate epimerase OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=dapF PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.556e-16
Identity = 40/79 (50.63%), Postives = 50/79 (63.29%), Query Frame = 1
Query:  424 KYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARF 660
            KY G GNDFI++DNR    P+      +KLCDR FGIGADG+I  +     TD+ M  +NSDG++  MCGNG RC   F
Sbjct:    5 KYQGTGNDFIMIDNRLQIFPKQNTALIQKLCDRRFGIGADGLIL-LENDQSTDFKMVYYNSDGNQSTMCGNGGRCLVAF 82          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_SHESR (Diaminopimelate epimerase OS=Shewanella sp. (strain MR-7) GN=dapF PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.644e-16
Identity = 42/85 (49.41%), Postives = 54/85 (63.53%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            + F K HGLGNDF++VD         +PEQ  +L DRNFG+G D ++      + D D+  RIFN+DG E E CGNG RCFARF+
Sbjct:    2 IQFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLADRNFGVGFDQLLLVEPPYDPDLDFHYRIFNADGGEVENCGNGARCFARFV 85          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_SHESM (Diaminopimelate epimerase OS=Shewanella sp. (strain MR-4) GN=dapF PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.644e-16
Identity = 42/85 (49.41%), Postives = 54/85 (63.53%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            + F K HGLGNDF++VD         +PEQ  +L DRNFG+G D ++      + D D+  RIFN+DG E E CGNG RCFARF+
Sbjct:    2 IQFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLADRNFGVGFDQLLLVEPPYDPDLDFHYRIFNADGGEVENCGNGARCFARFV 85          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_SHEON (Diaminopimelate epimerase OS=Shewanella oneidensis GN=dapF PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.644e-16
Identity = 42/85 (49.41%), Postives = 54/85 (63.53%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            + F K HGLGNDF++VD         +PEQ  +L DRNFG+G D ++      + D D+  RIFN+DG E E CGNG RCFARF+
Sbjct:    2 IQFTKMHGLGNDFMVVDGITQNV-FFSPEQIRRLADRNFGVGFDQLLLVEPPYDPDLDFHYRIFNADGGEVENCGNGARCFARFV 85          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_PSEE4 (Diaminopimelate epimerase OS=Pseudomonas entomophila (strain L48) GN=dapF PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.644e-16
Identity = 44/85 (51.76%), Postives = 55/85 (64.71%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            L F K HGLGNDF+++D   S    I P+ A++  DRN GIG D ++      N D D+  RIFN+DGSE E CGNG RCFARF+
Sbjct:    3 LRFTKMHGLGNDFMVLD-LVSQHAHIQPKHAKQWGDRNTGIGFDQLLIVEAPSNPDVDFRYRIFNADGSEVEQCGNGARCFARFV 86          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_PSYWF (Diaminopimelate epimerase OS=Psychrobacter sp. (strain PRwf-1) GN=dapF PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.065e-16
Identity = 43/85 (50.59%), Postives = 54/85 (63.53%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            + F K HGLGNDF+++D   +    +TPE    L DRN GIG D ++     +  D D+  RIFNSDGSE E CGNG RCFARF+
Sbjct:    3 IEFTKMHGLGNDFMVID-LVTQRLELTPELITLLADRNLGIGFDQLLVVEPPMRPDVDFRYRIFNSDGSEVEQCGNGARCFARFV 86          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_DESAP (Diaminopimelate epimerase OS=Desulforudis audaxviator (strain MP104C) GN=dapF PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.065e-16
Identity = 39/83 (46.99%), Postives = 52/83 (62.65%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARF 660
            + F K HGLGNDF++V+    + P      A ++CDR  G+GADG++  +L     D  MR+FN DGSEPEMCGN  RC A +
Sbjct:    1 MEFTKMHGLGNDFVIVNGFGQSLPDDPGALARRVCDRRLGVGADGLVL-LLPSAAADLRMRVFNPDGSEPEMCGNAIRCVALY 82          
The following BLAST results are available for this feature:
BLAST of FC876353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 275
Match NameE-valueIdentityDescription
DAPF_SHESA3.556e-1650.59Diaminopimelate epimerase OS=Shewanella sp. (strai... [more]
DAPF_RALPJ3.556e-1648.24Diaminopimelate epimerase OS=Ralstonia pickettii (... [more]
DAPF_METTP3.556e-1653.57Diaminopimelate epimerase OS=Methanosaeta thermoph... [more]
DAPF_FLAPJ3.556e-1650.63Diaminopimelate epimerase OS=Flavobacterium psychr... [more]
DAPF_SHESR4.644e-1649.41Diaminopimelate epimerase OS=Shewanella sp. (strai... [more]
DAPF_SHESM4.644e-1649.41Diaminopimelate epimerase OS=Shewanella sp. (strai... [more]
DAPF_SHEON4.644e-1649.41Diaminopimelate epimerase OS=Shewanella oneidensis... [more]
DAPF_PSEE44.644e-1651.76Diaminopimelate epimerase OS=Pseudomonas entomophi... [more]
DAPF_PSYWF6.065e-1650.59Diaminopimelate epimerase OS=Psychrobacter sp. (st... [more]
DAPF_DESAP6.065e-1646.99Diaminopimelate epimerase OS=Desulforudis audaxvia... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32003G07EF DevOvary1 Citrus clementina cDNA clone C32003G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876353 ID=FC876353; Name=FC876353; organism=Citrus clementina; type=EST; length=666bp
GGAATACGGTAACGTTTCTGCAGGAAATGCAGAGGATACCGTCTCTTCTC
TTGCACAAAACCTAGATTCTCTTTTCAACGTAACGGCACTGTATCACACA
AACTAAACCAACCACCGCATTTGACATTACCGCGACCAAGAGCAGAAACA
GAAAAGCCGTCAAAGCAAGCATCGAGCATGGCCATAACCACCACGCGCTC
ACTCTCCGTCACGCCCGTAACTCGCCGCTCTGCCACTCCAATCAATCCTC
TTCGATCCTCCTCTTTATCTTATTCGTTGACTCGACCATTCAGTTCCAAT
TTGACTCTCAAAGTCCCTAGCTTCCGCGTCTCGGCATCTTCTATGAGCAG
CATTCACGCTCCGGAGAGCGCTTCGCGAACCTCTTTTCTTGACCGCAGAG
AGAGCGGCTTCCTTCATTTCGTCAAGTACCATGGCCTCGGCAACGACTTC
ATTTTGGTTGATAACAGGAATTCTACGGAACCTAGGATAACTCCGGAGCA
AGCGGAGAAGCTGTGTGATCGGAATTTTGGCATTGGGGCCGATGGAGTGA
TCTTCGCCATGCTTGGAGTCAATGACACTGATTATACAATGAGAATTTTC
AATTCTGATGGTAGCGAGCCAGAGATGTGTGGCAATGGAGNTCGATGCTT
TGCCAGATTCATTGCT
back to top